Wall clock time and date at job start Wed Apr 1 2020 02:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46993 * 2 1 4 4 C 1.52997 * 109.47477 * 119.99741 * 2 1 3 5 5 C 1.53002 * 109.47535 * 184.99759 * 4 2 1 6 6 C 1.50696 * 109.46997 * 179.97438 * 5 4 2 7 7 H 1.07999 * 120.00319 * 0.02562 * 6 5 4 8 8 C 1.37885 * 119.99717 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99913 * 180.02562 * 8 6 5 10 10 Si 1.86798 * 119.99766 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.47353 * 269.99586 * 10 8 6 12 12 H 1.48501 * 109.47293 * 30.00037 * 10 8 6 13 13 H 1.48504 * 109.46680 * 149.99835 * 10 8 6 14 14 N 1.46903 * 109.47319 * 240.00000 * 2 1 3 15 15 C 1.46904 * 110.99678 * 84.99863 * 14 2 1 16 16 C 1.53005 * 109.46935 * 180.02562 * 15 14 2 17 17 H 1.08996 * 109.51182 * 60.09541 * 16 15 14 18 18 C 1.53289 * 109.51404 * 180.25297 * 16 15 14 19 19 N 1.47150 * 108.38607 * 172.22349 * 18 16 15 20 20 C 1.34776 * 120.98410 * 129.48985 * 19 18 16 21 21 O 1.21512 * 119.99594 * 359.97132 * 20 19 18 22 22 O 1.34629 * 120.00291 * 179.97438 * 20 19 18 23 23 C 1.45199 * 117.00295 * 179.97438 * 22 20 19 24 24 C 1.53000 * 109.46990 * 59.99664 * 23 22 20 25 25 C 1.52997 * 109.47327 * 179.97438 * 23 22 20 26 26 C 1.52998 * 109.47190 * 299.99672 * 23 22 20 27 27 C 1.47151 * 118.03482 * 309.46273 * 19 18 16 28 28 C 1.53297 * 108.38425 * 50.53683 * 27 19 18 29 29 O 1.42961 * 109.22188 * 307.69797 * 28 27 19 30 30 H 1.08999 * 109.46504 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46674 * 299.99715 * 1 2 3 32 32 H 1.08991 * 109.46971 * 59.99736 * 1 2 3 33 33 H 1.09005 * 109.46889 * 65.00084 * 4 2 1 34 34 H 1.09002 * 109.47401 * 305.00173 * 4 2 1 35 35 H 1.09005 * 109.46767 * 60.00250 * 5 4 2 36 36 H 1.09002 * 109.47113 * 300.00590 * 5 4 2 37 37 H 0.97001 * 119.99646 * 179.97438 * 9 8 6 38 38 H 1.00896 * 111.00249 * 208.95485 * 14 2 1 39 39 H 1.08996 * 109.47426 * 299.99669 * 15 14 2 40 40 H 1.08998 * 109.47242 * 60.00515 * 15 14 2 41 41 H 1.08999 * 109.68151 * 291.95256 * 18 16 15 42 42 H 1.09009 * 109.67839 * 52.50022 * 18 16 15 43 43 H 1.08994 * 109.47399 * 60.00205 * 24 23 22 44 44 H 1.09004 * 109.47108 * 180.02562 * 24 23 22 45 45 H 1.09003 * 109.47107 * 300.00083 * 24 23 22 46 46 H 1.09001 * 109.46928 * 60.00367 * 25 23 22 47 47 H 1.08998 * 109.47218 * 180.02562 * 25 23 22 48 48 H 1.09002 * 109.47379 * 300.00223 * 25 23 22 49 49 H 1.09003 * 109.47035 * 59.99838 * 26 23 22 50 50 H 1.08998 * 109.47176 * 179.97438 * 26 23 22 51 51 H 1.09001 * 109.47225 * 299.99731 * 26 23 22 52 52 H 1.08994 * 109.68349 * 290.81563 * 27 19 18 53 53 H 1.09005 * 109.68155 * 170.25856 * 27 19 18 54 54 H 1.09003 * 109.51438 * 187.76817 * 28 27 19 55 55 H 1.09003 * 109.51396 * 67.62084 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.6133 1.3136 6 6 4.0672 -1.3231 2.5444 7 1 3.3687 -1.8035 3.2136 8 6 5.4185 -1.3591 2.8163 9 7 5.8569 -1.9790 3.8902 10 14 6.6264 -0.5275 1.6592 11 1 7.0623 -1.4946 0.6200 12 1 5.9692 0.6348 1.0094 13 1 7.8080 -0.0617 2.4287 14 7 2.0197 -0.6925 -1.1994 15 6 2.0825 0.2227 -2.3469 16 6 2.5951 -0.5331 -3.5745 17 1 1.9180 -1.3556 -3.8046 18 6 2.6670 0.4225 -4.7710 19 7 3.3351 -0.2740 -5.8817 20 6 2.7862 -0.3038 -7.1123 21 8 1.7239 0.2493 -7.3172 22 8 3.4149 -0.9465 -8.1145 23 6 2.7652 -0.9381 -9.4130 24 6 2.5991 0.5058 -9.8908 25 6 3.6222 -1.7117 -10.4170 26 6 1.3901 -1.5992 -9.2996 27 6 4.6205 -0.9364 -5.6094 28 6 4.4535 -1.8259 -4.3721 29 8 3.9006 -1.0503 -3.3061 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.7517 -1.7715 1.2056 34 1 1.6055 -0.2617 2.1370 35 1 3.8533 0.4371 1.3573 36 1 3.9995 -1.0727 0.4259 37 1 6.8075 -2.0047 4.0812 38 1 2.9173 -1.1205 -1.0288 39 1 1.0871 0.6163 -2.5526 40 1 2.7589 1.0462 -2.1182 41 1 1.6597 0.7111 -5.0713 42 1 3.2377 1.3102 -4.4979 43 1 3.5787 0.9768 -9.9717 44 1 2.1110 0.5121 -10.8655 45 1 1.9887 1.0572 -9.1756 46 1 3.7409 -2.7404 -10.0768 47 1 3.1347 -1.7050 -11.3919 48 1 4.6018 -1.2404 -10.4978 49 1 0.7798 -1.0478 -8.5843 50 1 0.9023 -1.5926 -10.2742 51 1 1.5085 -2.6279 -8.9592 52 1 5.3878 -0.1856 -5.4209 53 1 4.9070 -1.5479 -6.4652 54 1 5.4253 -2.2177 -4.0714 55 1 3.7833 -2.6531 -4.6061 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172477391.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:53 Heat of formation + Delta-G solvation = -155.615623 kcal Electronic energy + Delta-G solvation = -31482.879403 eV Core-core repulsion = 27325.857666 eV Total energy + Delta-G solvation = -4157.021737 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 342.235 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.06062 -40.47892 -38.62008 -38.02921 -36.13112 -35.32130 -34.83273 -34.06920 -32.17170 -30.72299 -29.20462 -28.37413 -28.30367 -27.25565 -26.23013 -24.43280 -23.20866 -22.68792 -21.91450 -21.02478 -20.40930 -19.15348 -18.91067 -17.96981 -17.57451 -17.40755 -16.83843 -16.65297 -16.41727 -16.25650 -15.99337 -15.64315 -15.48592 -15.12262 -14.95542 -14.74685 -14.51675 -14.36934 -14.33290 -13.70308 -13.50303 -13.32320 -13.28031 -13.16632 -13.12418 -12.97191 -12.88223 -12.83887 -12.74645 -12.52869 -12.48792 -12.36912 -12.25308 -12.01422 -11.84092 -11.61850 -11.52924 -11.42412 -11.35948 -11.22062 -11.11202 -11.05702 -10.74920 -9.76570 -9.31371 -8.28560 -6.32195 0.95542 1.36233 1.37477 1.49433 1.64056 2.36580 2.64264 2.71244 3.06178 3.14372 3.71891 3.75510 3.78649 3.85292 3.89324 3.93733 4.00957 4.05664 4.17837 4.25399 4.33183 4.35832 4.45995 4.52506 4.58634 4.60917 4.63424 4.69442 4.74381 4.75802 4.77114 4.81311 4.85629 4.87319 4.90933 4.92463 5.03651 5.06745 5.07972 5.15251 5.20352 5.27038 5.32903 5.40974 5.44337 5.53945 5.56755 5.68153 6.10932 6.15664 6.23973 6.29980 6.47524 6.75812 7.14879 7.32118 8.88296 Molecular weight = 342.24amu Principal moments of inertia in cm(-1) A = 0.016365 B = 0.002350 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.578481 B =11909.981116 C =13089.356549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.086 3.914 3 H 0.041 0.959 4 C -0.099 4.099 5 C -0.007 4.007 6 C -0.530 4.530 7 H 0.030 0.970 8 C 0.003 3.997 9 N -0.951 5.951 10 Si 0.953 3.047 11 H -0.264 1.264 12 H -0.251 1.251 13 H -0.285 1.285 14 N -0.690 5.690 15 C 0.069 3.931 16 C 0.088 3.912 17 H 0.065 0.935 18 C 0.106 3.894 19 N -0.600 5.600 20 C 0.652 3.348 21 O -0.589 6.589 22 O -0.364 6.364 23 C 0.124 3.876 24 C -0.179 4.179 25 C -0.135 4.135 26 C -0.180 4.180 27 C 0.081 3.919 28 C 0.046 3.954 29 O -0.393 6.393 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.050 0.950 34 H 0.056 0.944 35 H 0.012 0.988 36 H 0.018 0.982 37 H 0.266 0.734 38 H 0.345 0.655 39 H 0.103 0.897 40 H 0.037 0.963 41 H 0.104 0.896 42 H 0.088 0.912 43 H 0.061 0.939 44 H 0.091 0.909 45 H 0.061 0.939 46 H 0.069 0.931 47 H 0.102 0.898 48 H 0.070 0.930 49 H 0.060 0.940 50 H 0.091 0.909 51 H 0.060 0.940 52 H 0.087 0.913 53 H 0.114 0.886 54 H 0.124 0.876 55 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.579 4.077 -32.743 33.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.023 4.023 3 H 0.059 0.941 4 C -0.137 4.137 5 C -0.045 4.045 6 C -0.568 4.568 7 H 0.049 0.951 8 C -0.194 4.194 9 N -0.592 5.592 10 Si 0.777 3.223 11 H -0.189 1.189 12 H -0.175 1.175 13 H -0.211 1.211 14 N -0.323 5.323 15 C -0.060 4.060 16 C 0.029 3.971 17 H 0.083 0.917 18 C -0.016 4.016 19 N -0.341 5.341 20 C 0.408 3.592 21 O -0.480 6.480 22 O -0.279 6.279 23 C 0.088 3.912 24 C -0.236 4.236 25 C -0.192 4.192 26 C -0.237 4.237 27 C -0.041 4.041 28 C -0.031 4.031 29 O -0.312 6.312 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.031 0.969 36 H 0.037 0.963 37 H 0.074 0.926 38 H 0.165 0.835 39 H 0.121 0.879 40 H 0.055 0.945 41 H 0.122 0.878 42 H 0.106 0.894 43 H 0.080 0.920 44 H 0.109 0.891 45 H 0.080 0.920 46 H 0.088 0.912 47 H 0.120 0.880 48 H 0.089 0.911 49 H 0.079 0.921 50 H 0.110 0.890 51 H 0.079 0.921 52 H 0.105 0.895 53 H 0.132 0.868 54 H 0.142 0.858 55 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.280 3.963 -32.807 33.637 hybrid contribution 1.321 0.496 0.364 1.457 sum -4.959 4.459 -32.443 33.121 Atomic orbital electron populations 1.21725 0.93273 1.02053 1.01755 1.21565 0.96460 0.95389 0.88885 0.94095 1.21538 0.95558 0.99974 0.96658 1.19509 0.94520 0.95563 0.94902 1.21490 0.92648 1.34156 1.08522 0.95140 1.26040 1.00699 0.95712 0.96929 1.70078 1.15237 1.45356 1.28554 0.85612 0.77866 0.79964 0.78886 1.18852 1.17478 1.21112 1.60609 1.34332 1.32741 1.04658 1.21997 1.01253 0.93562 0.89217 1.22473 0.84831 0.95895 0.93870 0.91685 1.22267 1.00180 0.94922 0.84256 1.47036 1.24000 1.56601 1.06497 1.18050 0.81769 0.77777 0.81638 1.90887 1.23505 1.50694 1.82903 1.86293 1.51666 1.70121 1.19825 1.22445 0.93410 0.97277 0.78070 1.22466 1.02880 0.95105 1.03159 1.21883 0.99987 1.00086 0.97279 1.22472 0.96158 1.00692 1.04372 1.22562 0.84173 0.97504 0.99908 1.23132 1.00829 0.92679 0.86462 1.88002 1.31954 1.70023 1.41205 0.92742 0.92009 0.91695 0.93079 0.92491 0.96929 0.96348 0.92552 0.83466 0.87886 0.94469 0.87770 0.89414 0.91976 0.89051 0.92043 0.91218 0.87965 0.91122 0.92065 0.89030 0.92110 0.89462 0.86809 0.85825 0.92538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.33 9.42 71.98 0.68 -2.65 16 2 C 0.09 2.69 2.65 44.91 0.12 2.81 16 3 H 0.04 1.27 7.80 -2.39 -0.02 1.25 16 4 C -0.10 -3.94 4.74 30.59 0.15 -3.80 16 5 C -0.01 -0.35 3.87 29.85 0.12 -0.24 16 6 C -0.53 -31.25 9.66 25.60 0.25 -31.00 16 7 H 0.03 1.98 7.99 -2.91 -0.02 1.95 16 8 C 0.00 0.16 5.47 84.66 0.46 0.63 16 9 N -0.95 -60.63 13.96 21.45 0.30 -60.33 16 10 Si 0.95 45.18 27.47 68.60 1.88 47.07 16 11 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 12 H -0.25 -11.16 6.54 99.48 0.65 -10.51 16 13 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 14 N -0.69 -20.87 6.31 -491.55 -3.10 -23.98 16 15 C 0.07 1.67 5.22 86.30 0.45 2.12 16 16 C 0.09 2.00 3.05 30.69 0.09 2.10 16 17 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 18 C 0.11 2.14 5.93 86.35 0.51 2.65 16 19 N -0.60 -12.30 3.02 -947.70 -2.86 -15.17 16 20 C 0.65 14.91 7.75 129.79 1.01 15.92 16 21 O -0.59 -15.85 11.35 19.80 0.22 -15.62 16 22 O -0.36 -7.09 8.58 -55.39 -0.48 -7.56 16 23 C 0.12 1.87 1.13 -10.80 -0.01 1.86 16 24 C -0.18 -2.67 8.37 71.98 0.60 -2.06 16 25 C -0.14 -1.20 8.85 71.98 0.64 -0.57 16 26 C -0.18 -2.77 8.37 71.98 0.60 -2.17 16 27 C 0.08 1.32 6.65 86.35 0.57 1.89 16 28 C 0.05 0.86 6.98 72.08 0.50 1.37 16 29 O -0.39 -10.01 9.72 -148.98 -1.45 -11.46 16 30 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.06 1.40 7.45 -2.39 -0.02 1.39 16 33 H 0.05 2.12 8.14 -2.38 -0.02 2.10 16 34 H 0.06 2.26 8.14 -2.39 -0.02 2.25 16 35 H 0.01 0.59 7.20 -2.38 -0.02 0.57 16 36 H 0.02 0.85 5.86 -2.39 -0.01 0.84 16 37 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 38 H 0.35 12.06 5.86 -89.70 -0.53 11.53 16 39 H 0.10 2.07 7.44 -2.39 -0.02 2.05 16 40 H 0.04 0.92 8.06 -2.39 -0.02 0.90 16 41 H 0.10 2.14 7.08 -2.39 -0.02 2.13 16 42 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 43 H 0.06 0.87 8.14 -2.39 -0.02 0.86 16 44 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 45 H 0.06 1.27 5.88 -2.39 -0.01 1.26 16 46 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 47 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 48 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 49 H 0.06 1.30 5.88 -2.39 -0.01 1.29 16 50 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 51 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 52 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 53 H 0.11 1.55 7.01 -2.38 -0.02 1.53 16 54 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 55 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -72.38 421.37 1.53 -70.85 By element: Atomic # 1 Polarization: 27.07 SS G_CDS: 0.27 Total: 27.34 kcal Atomic # 6 Polarization: -17.88 SS G_CDS: 6.74 Total: -11.15 kcal Atomic # 7 Polarization: -93.81 SS G_CDS: -5.66 Total: -99.48 kcal Atomic # 8 Polarization: -32.94 SS G_CDS: -1.70 Total: -34.64 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.88 Total: 47.07 kcal Total: -72.38 1.53 -70.85 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172477391.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.766 kcal (2) G-P(sol) polarization free energy of solvation -72.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds