Wall clock time and date at job start Wed Apr 1 2020 02:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46881 * 2 1 4 4 C 1.53000 * 109.46723 * 119.99960 * 2 1 3 5 5 C 1.53004 * 109.47026 * 185.00133 * 4 2 1 6 6 C 1.50692 * 109.47292 * 180.02562 * 5 4 2 7 7 H 1.07996 * 120.00061 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99961 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00072 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99923 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47280 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46988 * 119.99881 * 10 8 6 13 13 H 1.48499 * 109.46960 * 240.00107 * 10 8 6 14 14 N 1.46904 * 109.47190 * 239.99828 * 2 1 3 15 15 C 1.46900 * 110.99490 * 85.00216 * 14 2 1 16 16 C 1.53006 * 109.46604 * 180.02562 * 15 14 2 17 17 H 1.08998 * 109.50989 * 305.10070 * 16 15 14 18 18 C 1.53292 * 109.51113 * 184.99864 * 16 15 14 19 19 N 1.47153 * 108.38467 * 187.77333 * 18 16 15 20 20 C 1.34780 * 120.98491 * 230.51296 * 19 18 16 21 21 O 1.21513 * 119.99577 * 0.02562 * 20 19 18 22 22 O 1.34628 * 120.00286 * 179.97438 * 20 19 18 23 23 C 1.45202 * 117.00407 * 179.97438 * 22 20 19 24 24 C 1.53006 * 109.46867 * 59.99955 * 23 22 20 25 25 C 1.52999 * 109.47019 * 300.00782 * 23 22 20 26 26 C 1.52997 * 109.47464 * 180.02562 * 23 22 20 27 27 C 1.47149 * 118.03575 * 50.78720 * 19 18 16 28 28 C 1.53714 * 108.16228 * 309.15773 * 27 19 18 29 29 O 1.42959 * 109.14738 * 52.53636 * 28 27 19 30 30 H 1.08993 * 109.47517 * 300.00182 * 1 2 3 31 31 H 1.09000 * 109.46767 * 60.00008 * 1 2 3 32 32 H 1.09003 * 109.47299 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47491 * 304.99763 * 4 2 1 34 34 H 1.09000 * 109.47393 * 65.00386 * 4 2 1 35 35 H 1.09006 * 109.46783 * 300.00231 * 5 4 2 36 36 H 1.09000 * 109.47121 * 59.99445 * 5 4 2 37 37 H 0.96999 * 119.99644 * 179.97438 * 9 8 6 38 38 H 1.00903 * 110.99632 * 321.05005 * 14 2 1 39 39 H 1.08996 * 109.47590 * 60.00174 * 15 14 2 40 40 H 1.09001 * 109.47666 * 299.99401 * 15 14 2 41 41 H 1.09004 * 109.68353 * 68.05019 * 18 16 15 42 42 H 1.08996 * 109.71756 * 307.51524 * 18 16 15 43 43 H 1.09001 * 109.46801 * 300.00397 * 24 23 22 44 44 H 1.09001 * 109.46998 * 59.99993 * 24 23 22 45 45 H 1.09000 * 109.47050 * 180.02562 * 24 23 22 46 46 H 1.09000 * 109.47160 * 179.97438 * 25 23 22 47 47 H 1.09002 * 109.46719 * 299.99410 * 25 23 22 48 48 H 1.08993 * 109.47839 * 59.99251 * 25 23 22 49 49 H 1.09001 * 109.47375 * 300.00043 * 26 23 22 50 50 H 1.09002 * 109.46777 * 60.00599 * 26 23 22 51 51 H 1.09000 * 109.47140 * 180.02562 * 26 23 22 52 52 H 1.08999 * 109.68184 * 68.93527 * 27 19 18 53 53 H 1.09003 * 109.68309 * 189.48999 * 27 19 18 54 54 H 1.08993 * 109.65698 * 292.57413 * 28 27 19 55 55 H 1.08997 * 109.44476 * 172.36880 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5648 -0.6133 1.3138 6 6 4.0671 -1.3242 2.5439 7 1 3.3687 -1.8046 3.2130 8 6 5.4185 -1.3613 2.8151 9 7 6.2690 -0.7768 2.0001 10 14 6.0411 -2.2420 4.3403 11 1 4.8911 -2.8134 5.0862 12 1 6.9626 -3.3352 3.9392 13 1 6.7645 -1.2780 5.2078 14 7 2.0197 -0.6925 -1.1994 15 6 2.0825 0.2226 -2.3468 16 6 2.5951 -0.5332 -3.5744 17 1 3.5498 -1.0038 -3.3397 18 6 2.7797 0.4466 -4.7388 19 7 3.0904 -0.3268 -5.9515 20 6 4.1488 -0.0108 -6.7238 21 8 4.8632 0.9247 -6.4222 22 8 4.4150 -0.7323 -7.8289 23 6 5.5705 -0.3346 -8.6133 24 6 6.8297 -0.4265 -7.7490 25 6 5.3877 1.1055 -9.0965 26 6 5.7112 -1.2634 -9.8209 27 6 2.2078 -1.4517 -6.2994 28 6 2.0542 -2.3424 -5.0561 29 8 1.6468 -1.5355 -3.9486 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6053 -0.2618 2.1370 34 1 1.7516 -1.7715 1.2056 35 1 3.9994 -1.0728 0.4260 36 1 3.8531 0.4370 1.3574 37 1 7.2197 -0.8026 2.1911 38 1 1.4495 -1.4979 -1.4100 39 1 2.7589 1.0462 -2.1182 40 1 1.0871 0.6163 -2.5526 41 1 3.6008 1.1287 -4.5180 42 1 1.8618 1.0144 -4.8906 43 1 6.7291 0.2355 -6.8889 44 1 6.9599 -1.4524 -7.4046 45 1 7.6970 -0.1276 -8.3377 46 1 6.2552 1.4041 -9.6850 47 1 4.4906 1.1709 -9.7122 48 1 5.2871 1.7674 -8.2365 49 1 5.8413 -2.2895 -9.4769 50 1 4.8141 -1.1974 -10.4365 51 1 6.5789 -0.9651 -10.4095 52 1 1.2329 -1.0724 -6.6054 53 1 2.6500 -2.0274 -7.1125 54 1 3.0067 -2.8203 -4.8274 55 1 1.2998 -3.1056 -5.2474 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172477393.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:58 Heat of formation + Delta-G solvation = -157.932514 kcal Electronic energy + Delta-G solvation = -31311.386251 eV Core-core repulsion = 27154.264046 eV Total energy + Delta-G solvation = -4157.122205 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 342.235 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.05723 -40.45894 -38.53366 -38.00784 -36.12759 -35.36661 -34.83475 -33.98812 -31.98141 -30.37563 -29.09037 -28.39134 -28.30640 -27.03532 -26.26951 -24.43253 -23.36233 -22.84983 -21.97800 -21.21909 -20.41848 -19.13090 -18.35891 -17.93850 -17.52124 -17.41171 -16.92372 -16.57015 -16.45864 -16.13143 -15.82702 -15.63401 -15.44964 -15.10609 -14.75668 -14.70833 -14.47650 -14.42302 -14.08950 -13.65276 -13.58265 -13.33706 -13.19441 -13.13861 -13.05551 -12.97546 -12.88992 -12.85637 -12.75360 -12.52892 -12.43523 -12.38245 -12.31367 -12.22603 -11.83943 -11.63176 -11.50968 -11.43415 -11.25274 -11.19658 -11.08914 -10.93211 -10.48601 -9.75080 -9.10535 -8.13263 -6.23593 0.95027 1.39361 1.40079 1.53275 1.64379 2.43828 2.63944 2.71287 3.16733 3.19159 3.71782 3.76571 3.77620 3.85010 3.91725 3.93021 4.02496 4.09825 4.21673 4.28348 4.33607 4.38072 4.49626 4.52518 4.57813 4.59455 4.64968 4.71809 4.74391 4.77075 4.81740 4.82036 4.86750 4.86934 4.91559 5.03697 5.08148 5.09103 5.13990 5.21405 5.26000 5.32364 5.32832 5.40935 5.49406 5.60590 5.90201 6.03946 6.09086 6.16097 6.28499 6.35896 6.66401 6.96907 7.15247 7.44459 8.98150 Molecular weight = 342.24amu Principal moments of inertia in cm(-1) A = 0.011342 B = 0.002360 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.152098 B =11863.163450 C =13460.327056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.090 3.910 3 H 0.062 0.938 4 C -0.088 4.088 5 C 0.038 3.962 6 C -0.540 4.540 7 H 0.056 0.944 8 C -0.004 4.004 9 N -0.934 5.934 10 Si 0.962 3.038 11 H -0.262 1.262 12 H -0.280 1.280 13 H -0.279 1.279 14 N -0.691 5.691 15 C 0.077 3.923 16 C 0.092 3.908 17 H 0.046 0.954 18 C 0.107 3.893 19 N -0.601 5.601 20 C 0.649 3.351 21 O -0.593 6.593 22 O -0.362 6.362 23 C 0.125 3.875 24 C -0.183 4.183 25 C -0.178 4.178 26 C -0.133 4.133 27 C 0.080 3.920 28 C 0.046 3.954 29 O -0.381 6.381 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.051 0.949 34 H 0.046 0.954 35 H 0.002 0.998 36 H -0.023 1.023 37 H 0.260 0.740 38 H 0.347 0.653 39 H 0.077 0.923 40 H 0.057 0.943 41 H 0.090 0.910 42 H 0.099 0.901 43 H 0.056 0.944 44 H 0.058 0.942 45 H 0.091 0.909 46 H 0.090 0.910 47 H 0.066 0.934 48 H 0.058 0.942 49 H 0.068 0.932 50 H 0.074 0.926 51 H 0.101 0.899 52 H 0.097 0.903 53 H 0.111 0.889 54 H 0.045 0.955 55 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.777 -0.750 -27.095 28.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.019 4.019 3 H 0.081 0.919 4 C -0.126 4.126 5 C 0.001 3.999 6 C -0.578 4.578 7 H 0.074 0.926 8 C -0.201 4.201 9 N -0.575 5.575 10 Si 0.786 3.214 11 H -0.186 1.186 12 H -0.206 1.206 13 H -0.204 1.204 14 N -0.323 5.323 15 C -0.052 4.052 16 C 0.032 3.968 17 H 0.064 0.936 18 C -0.015 4.015 19 N -0.343 5.343 20 C 0.404 3.596 21 O -0.484 6.484 22 O -0.276 6.276 23 C 0.088 3.912 24 C -0.240 4.240 25 C -0.235 4.235 26 C -0.190 4.190 27 C -0.042 4.042 28 C -0.031 4.031 29 O -0.300 6.300 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.020 0.980 36 H -0.005 1.005 37 H 0.069 0.931 38 H 0.166 0.834 39 H 0.096 0.904 40 H 0.075 0.925 41 H 0.108 0.892 42 H 0.117 0.883 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.110 0.890 46 H 0.109 0.891 47 H 0.085 0.915 48 H 0.077 0.923 49 H 0.087 0.913 50 H 0.093 0.907 51 H 0.120 0.880 52 H 0.115 0.885 53 H 0.130 0.870 54 H 0.063 0.937 55 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -8.841 -0.395 -26.854 28.274 hybrid contribution 0.334 -0.037 0.662 0.742 sum -8.507 -0.432 -26.192 27.542 Atomic orbital electron populations 1.22367 0.95290 1.02413 1.02484 1.21528 0.93430 0.96984 0.89996 0.91921 1.21460 0.96430 0.99081 0.95662 1.18830 0.92300 0.93820 0.94961 1.21853 0.92464 1.34133 1.09372 0.92589 1.25980 0.97467 0.96597 1.00052 1.70137 1.02497 1.45818 1.39007 0.85453 0.78408 0.78267 0.79229 1.18551 1.20551 1.20428 1.60359 1.58678 1.09956 1.03268 1.21830 1.00624 0.94683 0.88113 1.22334 0.92467 0.89046 0.92908 0.93632 1.22233 1.03243 0.93887 0.82167 1.47066 1.27189 1.34645 1.25356 1.18129 0.80877 0.80598 0.79978 1.90907 1.50750 1.32542 1.74168 1.86275 1.49687 1.56441 1.35224 1.22445 0.81768 0.96500 0.90439 1.22497 0.97698 1.02516 1.01288 1.22458 1.03650 0.95183 1.02255 1.21873 1.04234 0.98752 0.94171 1.22714 0.95232 0.87299 0.98918 1.23235 1.02003 0.93093 0.84773 1.87920 1.43840 1.47605 1.50585 0.91639 0.91771 0.92155 0.93067 0.93541 0.97975 1.00483 0.93119 0.83391 0.90428 0.92533 0.89183 0.88265 0.92542 0.92277 0.88979 0.89092 0.91509 0.92346 0.91261 0.90677 0.88019 0.88508 0.87045 0.93707 0.84474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.21 9.16 71.98 0.66 -3.55 16 2 C 0.09 3.04 2.59 44.92 0.12 3.15 16 3 H 0.06 2.21 7.80 -2.39 -0.02 2.19 16 4 C -0.09 -3.74 4.83 30.60 0.15 -3.60 16 5 C 0.04 2.11 4.86 29.85 0.15 2.25 16 6 C -0.54 -32.24 9.11 25.60 0.23 -32.01 16 7 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 8 C 0.00 -0.24 5.46 84.66 0.46 0.22 16 9 N -0.93 -59.63 13.29 21.45 0.28 -59.34 16 10 Si 0.96 46.19 29.54 68.60 2.03 48.22 16 11 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 12 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 13 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 14 N -0.69 -22.86 5.70 -491.55 -2.80 -25.66 16 15 C 0.08 2.11 5.19 86.31 0.45 2.55 16 16 C 0.09 2.38 3.02 30.69 0.09 2.48 16 17 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 18 C 0.11 2.50 5.92 86.35 0.51 3.01 16 19 N -0.60 -13.65 3.01 -946.88 -2.85 -16.51 16 20 C 0.65 17.08 7.75 129.79 1.01 18.08 16 21 O -0.59 -18.96 11.35 19.80 0.22 -18.73 16 22 O -0.36 -7.91 8.58 -55.38 -0.48 -8.39 16 23 C 0.12 2.23 1.13 -10.79 -0.01 2.22 16 24 C -0.18 -3.66 8.37 71.98 0.60 -3.06 16 25 C -0.18 -3.10 8.37 71.98 0.60 -2.50 16 26 C -0.13 -1.42 8.85 71.98 0.64 -0.78 16 27 C 0.08 1.25 6.68 86.50 0.58 1.83 16 28 C 0.05 0.79 7.00 72.22 0.51 1.30 16 29 O -0.38 -8.80 9.91 -148.98 -1.48 -10.28 16 30 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.06 1.39 7.45 -2.39 -0.02 1.38 16 32 H 0.06 1.46 8.13 -2.39 -0.02 1.44 16 33 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.00 0.11 7.75 -2.38 -0.02 0.09 16 36 H -0.02 -1.41 8.14 -2.39 -0.02 -1.42 16 37 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 38 H 0.35 10.74 8.04 -89.69 -0.72 10.02 16 39 H 0.08 2.26 8.05 -2.39 -0.02 2.24 16 40 H 0.06 1.30 7.44 -2.39 -0.02 1.28 16 41 H 0.09 2.43 7.08 -2.39 -0.02 2.42 16 42 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.06 1.53 5.88 -2.39 -0.01 1.52 16 44 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 46 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 47 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 48 H 0.06 1.40 5.88 -2.39 -0.01 1.39 16 49 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 50 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 51 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 52 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 53 H 0.11 1.49 7.01 -2.39 -0.02 1.47 16 54 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 55 H 0.14 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -75.59 427.84 1.78 -73.80 By element: Atomic # 1 Polarization: 25.17 SS G_CDS: 0.12 Total: 25.29 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: 6.74 Total: -8.40 kcal Atomic # 7 Polarization: -96.13 SS G_CDS: -5.37 Total: -101.51 kcal Atomic # 8 Polarization: -35.67 SS G_CDS: -1.73 Total: -37.40 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -75.59 1.78 -73.80 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172477393.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.131 kcal (2) G-P(sol) polarization free energy of solvation -75.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds