Wall clock time and date at job start Wed Apr 1 2020 02:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47034 * 2 1 4 4 C 1.52999 * 109.47536 * 240.00119 * 2 1 3 5 5 C 1.52998 * 109.47315 * 176.68288 * 4 2 1 6 6 C 1.50700 * 109.47025 * 175.34479 * 5 4 2 7 7 H 1.08000 * 120.00291 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99809 * 179.72528 * 6 5 4 9 9 N 1.31520 * 120.00019 * 0.28105 * 8 6 5 10 10 Si 1.86801 * 120.00113 * 180.27580 * 8 6 5 11 11 H 1.48503 * 109.46986 * 60.00088 * 10 8 6 12 12 H 1.48497 * 109.47293 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.46935 * 300.00503 * 10 8 6 14 14 N 1.46901 * 109.47131 * 119.99943 * 2 1 3 15 15 C 1.41447 * 110.99821 * 57.56878 * 14 2 1 16 16 C 1.54776 * 109.98237 * 168.31503 * 15 14 2 17 17 N 1.44884 * 109.68161 * 69.74320 * 16 15 14 18 18 C 1.34783 * 118.74487 * 90.27753 * 17 16 15 19 19 O 1.21517 * 119.99551 * 180.02562 * 18 17 16 20 20 O 1.34631 * 120.00122 * 359.97438 * 18 17 16 21 21 C 1.45200 * 117.00262 * 180.02562 * 20 18 17 22 22 C 1.52999 * 109.46954 * 59.99709 * 21 20 18 23 23 C 1.52994 * 109.47494 * 180.02562 * 21 20 18 24 24 C 1.53005 * 109.46811 * 300.00276 * 21 20 18 25 25 C 1.47614 * 122.50804 * 270.24744 * 17 16 15 26 26 C 1.53804 * 111.29696 * 41.70660 * 25 17 16 27 27 H 1.09001 * 109.44399 * 279.99043 * 26 25 17 28 28 O 1.42900 * 109.43905 * 160.09000 * 26 25 17 29 29 C 1.46193 * 111.00083 * 286.53726 * 14 2 1 30 30 H 1.09010 * 109.46915 * 183.85527 * 1 2 3 31 31 H 1.08996 * 109.47413 * 303.85954 * 1 2 3 32 32 H 1.09002 * 109.46824 * 63.86332 * 1 2 3 33 33 H 1.09006 * 109.46718 * 56.68267 * 4 2 1 34 34 H 1.08999 * 109.46946 * 296.68765 * 4 2 1 35 35 H 1.09001 * 109.46676 * 55.34749 * 5 4 2 36 36 H 1.08995 * 109.47618 * 295.34834 * 5 4 2 37 37 H 0.96999 * 119.99900 * 180.02562 * 9 8 6 38 38 H 1.08998 * 109.38934 * 288.47766 * 15 14 2 39 39 H 1.08997 * 109.38311 * 48.26605 * 15 14 2 40 40 H 1.09006 * 109.43249 * 189.80983 * 16 15 14 41 41 H 1.08991 * 109.43791 * 309.72187 * 16 15 14 42 42 H 1.08996 * 109.47208 * 60.00733 * 22 21 20 43 43 H 1.09003 * 109.47061 * 180.02562 * 22 21 20 44 44 H 1.09001 * 109.47319 * 300.00189 * 22 21 20 45 45 H 1.09002 * 109.47300 * 59.99452 * 23 21 20 46 46 H 1.09003 * 109.47398 * 180.02562 * 23 21 20 47 47 H 1.09005 * 109.47216 * 299.99856 * 23 21 20 48 48 H 1.08997 * 109.47100 * 59.99496 * 24 21 20 49 49 H 1.09003 * 109.46800 * 179.97438 * 24 21 20 50 50 H 1.09002 * 109.46628 * 299.99718 * 24 21 20 51 51 H 1.08995 * 109.11446 * 162.17481 * 25 17 16 52 52 H 1.09005 * 109.11111 * 281.30091 * 25 17 16 53 53 H 0.96698 * 113.99959 * 60.00493 * 28 26 25 54 54 H 1.09004 * 109.53739 * 335.11641 * 29 14 2 55 55 H 1.09000 * 109.53320 * 95.34263 * 29 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5678 -0.6493 -1.2916 6 6 4.0764 -1.4558 -2.4586 7 1 3.3798 -1.9681 -3.1056 8 6 5.4309 -1.5347 -2.7039 9 7 6.2793 -0.9105 -1.9162 10 14 6.0611 -2.5281 -4.1549 11 1 5.5000 -1.9757 -5.4140 12 1 7.5436 -2.4544 -4.1989 13 1 5.6405 -3.9444 -4.0051 14 7 2.0196 -0.6925 1.1994 15 6 1.5209 -2.0147 1.2605 16 6 2.2702 -2.8127 2.3547 17 7 1.8971 -2.3151 3.6633 18 6 0.8445 -2.8736 4.2932 19 8 0.5115 -2.4735 5.3912 20 8 0.1615 -3.8739 3.7054 21 6 -0.9610 -4.4273 4.4416 22 6 -1.9902 -3.3265 4.7058 23 6 -1.6080 -5.5448 3.6210 24 6 -0.4671 -4.9942 5.7742 25 6 2.6262 -1.2202 4.3332 26 6 2.9844 -0.0995 3.3426 27 1 3.8688 -0.3868 2.7740 28 8 3.2536 1.1045 4.0637 29 6 1.8280 0.1289 2.3936 30 1 -0.3633 -1.0254 0.0691 31 1 -0.3634 0.5725 0.8533 32 1 -0.3633 0.4527 -0.9226 33 1 1.6290 -0.2428 -2.1382 34 1 1.7261 -1.7646 -1.2200 35 1 3.9763 -1.0531 -0.3652 36 1 3.8797 0.3890 -1.4040 37 1 7.2322 -0.9657 -2.0891 38 1 0.4569 -1.9896 1.4955 39 1 1.6669 -2.5013 0.2961 40 1 2.0065 -3.8676 2.2790 41 1 3.3451 -2.6967 2.2163 42 1 -2.3420 -2.9226 3.7565 43 1 -2.8326 -3.7418 5.2589 44 1 -1.5289 -2.5306 5.2906 45 1 -0.8745 -6.3290 3.4332 46 1 -2.4509 -5.9600 4.1735 47 1 -1.9598 -5.1414 2.6715 48 1 -0.0059 -4.1983 6.3589 49 1 -1.3099 -5.4092 6.3271 50 1 0.2661 -5.7784 5.5859 51 1 2.0023 -0.8092 5.1268 52 1 3.5432 -1.6166 4.7693 53 1 3.9865 1.0321 4.6903 54 1 1.7913 1.1808 2.1104 55 1 0.8948 -0.1508 2.8824 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172494552.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:53 Heat of formation + Delta-G solvation = -143.076817 kcal Electronic energy + Delta-G solvation = -33154.763169 eV Core-core repulsion = 28998.285156 eV Total energy + Delta-G solvation = -4156.478014 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 342.235 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.13678 -40.70650 -38.67340 -37.87815 -36.70004 -35.35408 -34.84806 -33.35555 -32.17797 -30.93374 -28.44401 -28.35436 -28.28489 -27.39164 -26.77825 -24.49807 -23.48683 -22.63180 -21.54122 -20.72886 -20.16766 -18.80043 -18.35387 -18.18207 -17.95062 -17.48644 -16.89137 -16.73803 -16.56572 -16.39547 -15.76461 -15.49682 -15.05218 -14.84542 -14.81106 -14.50992 -14.33034 -14.10717 -14.04871 -13.71030 -13.38885 -13.29920 -13.25631 -13.15997 -13.10607 -12.95152 -12.86369 -12.84774 -12.74294 -12.58760 -12.40491 -12.39151 -12.33777 -12.19775 -11.84677 -11.67308 -11.38817 -11.36805 -11.13981 -11.05618 -11.03170 -10.87188 -10.42266 -9.82599 -8.99841 -8.08398 -6.17655 1.08188 1.43832 1.45712 1.53263 1.70371 2.47526 2.70447 2.76313 3.24436 3.54358 3.63963 3.76417 3.81499 3.91684 3.95580 3.96397 4.04311 4.15746 4.27405 4.30324 4.37282 4.45365 4.47822 4.55140 4.61731 4.62422 4.68295 4.73645 4.74479 4.77526 4.84470 4.86177 4.88966 4.95394 4.97710 5.03274 5.09247 5.09850 5.11780 5.28210 5.29050 5.33200 5.40965 5.47779 5.50587 5.65675 5.93845 6.09486 6.22548 6.28330 6.39598 6.55346 6.82620 7.01892 7.23345 7.50018 9.02224 Molecular weight = 342.24amu Principal moments of inertia in cm(-1) A = 0.011801 B = 0.003198 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.188415 B = 8752.153420 C = 9511.152461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.097 3.903 3 H 0.066 0.934 4 C -0.092 4.092 5 C 0.041 3.959 6 C -0.538 4.538 7 H 0.055 0.945 8 C 0.003 3.997 9 N -0.930 5.930 10 Si 0.954 3.046 11 H -0.271 1.271 12 H -0.287 1.287 13 H -0.267 1.267 14 N -0.555 5.555 15 C 0.065 3.935 16 C 0.117 3.883 17 N -0.582 5.582 18 C 0.647 3.353 19 O -0.591 6.591 20 O -0.363 6.363 21 C 0.123 3.877 22 C -0.177 4.177 23 C -0.136 4.136 24 C -0.177 4.177 25 C 0.105 3.895 26 C 0.105 3.895 27 H 0.067 0.933 28 O -0.570 6.570 29 C 0.089 3.911 30 H 0.059 0.941 31 H 0.051 0.949 32 H 0.068 0.932 33 H 0.051 0.949 34 H 0.057 0.943 35 H 0.013 0.987 36 H -0.025 1.025 37 H 0.260 0.740 38 H 0.027 0.973 39 H 0.089 0.911 40 H 0.100 0.900 41 H 0.086 0.914 42 H 0.056 0.944 43 H 0.092 0.908 44 H 0.060 0.940 45 H 0.069 0.931 46 H 0.103 0.897 47 H 0.065 0.935 48 H 0.061 0.939 49 H 0.091 0.909 50 H 0.061 0.939 51 H 0.091 0.909 52 H 0.086 0.914 53 H 0.399 0.601 54 H 0.072 0.928 55 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.790 -6.571 15.064 22.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.011 4.011 3 H 0.084 0.916 4 C -0.130 4.130 5 C 0.004 3.996 6 C -0.577 4.577 7 H 0.073 0.927 8 C -0.194 4.194 9 N -0.570 5.570 10 Si 0.780 3.220 11 H -0.197 1.197 12 H -0.212 1.212 13 H -0.192 1.192 14 N -0.279 5.279 15 C -0.065 4.065 16 C -0.007 4.007 17 N -0.323 5.323 18 C 0.403 3.597 19 O -0.483 6.483 20 O -0.278 6.278 21 C 0.087 3.913 22 C -0.234 4.234 23 C -0.192 4.192 24 C -0.234 4.234 25 C -0.017 4.017 26 C 0.044 3.956 27 H 0.085 0.915 28 O -0.377 6.377 29 C -0.039 4.039 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.031 0.969 36 H -0.007 1.007 37 H 0.068 0.932 38 H 0.045 0.955 39 H 0.107 0.893 40 H 0.118 0.882 41 H 0.104 0.896 42 H 0.075 0.925 43 H 0.110 0.890 44 H 0.079 0.921 45 H 0.088 0.912 46 H 0.121 0.879 47 H 0.084 0.916 48 H 0.080 0.920 49 H 0.110 0.890 50 H 0.080 0.920 51 H 0.109 0.891 52 H 0.104 0.896 53 H 0.249 0.751 54 H 0.091 0.909 55 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -14.788 -6.300 15.052 22.021 hybrid contribution 0.476 -0.230 -0.331 0.624 sum -14.311 -6.530 14.721 21.544 Atomic orbital electron populations 1.22349 0.96246 1.02086 1.02252 1.21670 0.92911 0.97199 0.89310 0.91574 1.21593 0.97059 0.99264 0.95067 1.18802 0.91485 0.93807 0.95487 1.21749 0.92093 1.30725 1.13092 0.92713 1.25851 0.97528 0.96928 0.99143 1.70104 1.02402 1.44702 1.39831 0.85674 0.76899 0.79554 0.79917 1.19651 1.21239 1.19189 1.57984 1.64711 1.02639 1.02597 1.21701 0.95838 0.88946 1.00029 1.21802 1.00805 0.98314 0.79756 1.46670 1.29533 1.36480 1.19587 1.18204 0.79957 0.79072 0.82517 1.90861 1.70053 1.66079 1.21267 1.86355 1.44095 1.47789 1.49548 1.22422 0.82794 0.93880 0.92234 1.22446 0.99237 0.99229 1.02534 1.21876 1.01147 0.95882 1.00346 1.22452 1.02980 1.01585 0.96403 1.22576 0.97201 0.86490 0.95408 1.21846 0.98567 0.83851 0.91334 0.91543 1.86502 1.58073 1.33798 1.59290 1.21187 0.95516 0.97418 0.89776 0.92240 0.92953 0.91255 0.93071 0.92468 0.96862 1.00710 0.93169 0.95540 0.89293 0.88186 0.89588 0.92517 0.88967 0.92081 0.91208 0.87869 0.91559 0.91967 0.89031 0.92018 0.89055 0.89562 0.75104 0.90907 0.94665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.53 8.69 71.98 0.63 -3.91 16 2 C 0.10 3.17 2.23 44.91 0.10 3.27 16 3 H 0.07 2.33 7.68 -2.39 -0.02 2.31 16 4 C -0.09 -3.61 4.44 30.59 0.14 -3.47 16 5 C 0.04 2.11 4.91 29.85 0.15 2.26 16 6 C -0.54 -30.07 9.11 25.60 0.23 -29.84 16 7 H 0.05 2.94 7.74 -2.91 -0.02 2.91 16 8 C 0.00 0.17 5.46 84.65 0.46 0.64 16 9 N -0.93 -56.16 13.29 21.45 0.28 -55.88 16 10 Si 0.95 43.96 29.54 68.60 2.03 45.99 16 11 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 12 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 13 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 14 N -0.55 -17.52 3.09 -886.17 -2.74 -20.26 16 15 C 0.06 1.86 4.47 87.90 0.39 2.26 16 16 C 0.12 3.07 5.52 87.29 0.48 3.56 16 17 N -0.58 -15.18 2.18 -948.21 -2.07 -17.25 16 18 C 0.65 17.90 7.65 129.79 0.99 18.89 16 19 O -0.59 -18.18 11.18 19.79 0.22 -17.96 16 20 O -0.36 -9.02 8.56 -55.41 -0.47 -9.50 16 21 C 0.12 2.39 1.13 -10.79 -0.01 2.38 16 22 C -0.18 -3.44 8.37 71.98 0.60 -2.84 16 23 C -0.14 -1.84 8.85 71.98 0.64 -1.21 16 24 C -0.18 -3.26 8.37 71.98 0.60 -2.66 16 25 C 0.10 2.51 5.78 86.44 0.50 3.01 16 26 C 0.10 2.77 3.34 30.32 0.10 2.87 16 27 H 0.07 2.01 7.98 -2.39 -0.02 1.99 16 28 O -0.57 -13.88 13.23 -148.98 -1.97 -15.86 16 29 C 0.09 2.60 4.36 85.89 0.37 2.98 16 30 H 0.06 1.53 6.43 -2.38 -0.02 1.52 16 31 H 0.05 1.32 7.75 -2.39 -0.02 1.30 16 32 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 34 H 0.06 2.17 6.07 -2.39 -0.01 2.15 16 35 H 0.01 0.71 7.57 -2.39 -0.02 0.69 16 36 H -0.03 -1.47 8.14 -2.39 -0.02 -1.49 16 37 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 38 H 0.03 0.76 6.74 -2.39 -0.02 0.74 16 39 H 0.09 2.78 5.67 -2.39 -0.01 2.77 16 40 H 0.10 2.41 7.23 -2.38 -0.02 2.39 16 41 H 0.09 2.43 8.11 -2.39 -0.02 2.41 16 42 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.06 1.53 5.88 -2.39 -0.01 1.52 16 45 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 48 H 0.06 1.49 5.88 -2.39 -0.01 1.47 16 49 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 50 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 51 H 0.09 2.35 6.98 -2.39 -0.02 2.34 16 52 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 53 H 0.40 5.94 9.08 -74.06 -0.67 5.26 16 54 H 0.07 2.25 7.31 -2.38 -0.02 2.24 16 55 H 0.04 1.06 7.32 -2.39 -0.02 1.04 16 Total: -1.00 -68.74 414.36 1.84 -66.90 By element: Atomic # 1 Polarization: 25.44 SS G_CDS: 0.19 Total: 25.63 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: 6.38 Total: -1.81 kcal Atomic # 7 Polarization: -88.86 SS G_CDS: -4.52 Total: -93.39 kcal Atomic # 8 Polarization: -41.09 SS G_CDS: -2.22 Total: -43.32 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -68.74 1.84 -66.90 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172494552.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.181 kcal (2) G-P(sol) polarization free energy of solvation -68.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds