Wall clock time and date at job start Wed Apr 1 2020 03:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46905 * 109.47367 * 2 1 4 4 C 1.46896 * 111.00269 * 199.75494 * 3 2 1 5 5 C 1.50698 * 109.46954 * 66.04719 * 4 3 2 6 6 H 1.08003 * 120.00206 * 0.02562 * 5 4 3 7 7 C 1.37882 * 120.00287 * 179.97438 * 5 4 3 8 8 N 1.31507 * 120.00164 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 119.99713 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.46944 * 89.99734 * 9 7 5 11 11 H 1.48499 * 109.47020 * 209.99917 * 9 7 5 12 12 H 1.48503 * 109.47080 * 330.00067 * 9 7 5 13 13 C 1.46904 * 110.99549 * 75.80272 * 3 2 1 14 14 C 1.52995 * 109.46939 * 199.64801 * 13 3 2 15 15 C 1.53002 * 109.47186 * 174.92103 * 14 13 3 16 16 H 1.09002 * 109.55569 * 54.86603 * 15 14 13 17 17 C 1.53296 * 109.51387 * 175.00057 * 15 14 13 18 18 N 1.47156 * 108.38414 * 172.22479 * 17 15 14 19 19 C 1.34768 * 120.98013 * 129.44025 * 18 17 15 20 20 O 1.21510 * 120.00648 * 359.97438 * 19 18 17 21 21 O 1.34639 * 119.99997 * 180.02562 * 19 18 17 22 22 C 1.45193 * 117.00557 * 180.02562 * 21 19 18 23 23 C 1.53005 * 109.47211 * 59.99341 * 22 21 19 24 24 C 1.52993 * 109.47609 * 179.97438 * 22 21 19 25 25 C 1.53003 * 109.47126 * 299.99772 * 22 21 19 26 26 C 1.47150 * 118.03365 * 309.71231 * 18 17 15 27 27 C 1.52887 * 108.60893 * 50.22914 * 26 18 17 28 28 O 1.42961 * 109.50946 * 294.74332 * 15 14 13 29 29 H 1.09007 * 109.47429 * 54.84369 * 1 2 3 30 30 H 1.09001 * 109.47643 * 174.84898 * 1 2 3 31 31 H 1.09002 * 109.47180 * 294.84978 * 1 2 3 32 32 H 1.09002 * 109.46508 * 240.00840 * 2 1 3 33 33 H 1.08997 * 109.47268 * 120.00923 * 2 1 3 34 34 H 1.08992 * 109.47203 * 186.04798 * 4 3 2 35 35 H 1.09000 * 109.46976 * 306.05148 * 4 3 2 36 36 H 0.96999 * 119.99930 * 180.02562 * 8 7 5 37 37 H 1.08999 * 109.46913 * 79.64656 * 13 3 2 38 38 H 1.08999 * 109.47215 * 319.64986 * 13 3 2 39 39 H 1.08996 * 109.47228 * 54.91984 * 14 13 3 40 40 H 1.09000 * 109.47166 * 294.91451 * 14 13 3 41 41 H 1.08998 * 109.68346 * 52.50059 * 17 15 14 42 42 H 1.09001 * 109.71096 * 291.96105 * 17 15 14 43 43 H 1.09007 * 109.46685 * 60.00655 * 23 22 21 44 44 H 1.08997 * 109.47260 * 180.02562 * 23 22 21 45 45 H 1.08992 * 109.47217 * 300.00619 * 23 22 21 46 46 H 1.09005 * 109.46800 * 60.00120 * 24 22 21 47 47 H 1.09007 * 109.47514 * 179.97438 * 24 22 21 48 48 H 1.08999 * 109.47643 * 300.00362 * 24 22 21 49 49 H 1.09001 * 109.47027 * 59.99807 * 25 22 21 50 50 H 1.08998 * 109.47476 * 179.97438 * 25 22 21 51 51 H 1.08997 * 109.46871 * 299.99812 * 25 22 21 52 52 H 1.09004 * 109.68007 * 170.00573 * 26 18 17 53 53 H 1.08995 * 109.68544 * 290.56382 * 26 18 17 54 54 H 1.09000 * 109.58339 * 187.92193 * 27 26 18 55 55 H 1.09002 * 109.36255 * 67.81672 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4120 1.4511 -0.4635 5 6 3.4783 1.0475 -1.9139 6 1 2.5762 0.7700 -2.4390 7 6 4.6904 1.0334 -2.5710 8 7 4.7481 0.6816 -3.8368 9 14 6.2505 1.5139 -1.6631 10 1 6.8541 0.3071 -1.0430 11 1 7.2150 2.1139 -2.6196 12 1 5.9227 2.5028 -0.6047 13 6 1.8780 1.9934 1.3296 14 6 1.9209 3.5173 1.2003 15 6 1.6472 4.1528 2.5649 16 1 2.3497 3.7579 3.2989 17 6 1.8127 5.6735 2.4641 18 7 1.3645 6.2741 3.7304 19 6 2.1389 7.1564 4.3922 20 8 3.2253 7.4665 3.9449 21 8 1.7094 7.6936 5.5497 22 6 2.5955 8.6370 6.2076 23 6 2.8598 9.8226 5.2772 24 6 1.9415 9.1372 7.4970 25 6 3.9191 7.9459 6.5414 26 6 0.0482 5.8783 4.2559 27 6 -0.0338 4.3516 4.2667 28 8 0.3106 3.8509 2.9727 29 1 -0.3634 0.5918 -0.8402 30 1 -0.3634 -1.0235 -0.0923 31 1 -0.3634 0.4319 0.9325 32 1 1.8932 -0.5137 -0.8901 33 1 1.8933 -0.5140 0.8899 34 1 3.7840 2.4696 -0.3525 35 1 4.0253 0.7735 0.1305 36 1 5.6009 0.6713 -4.2990 37 1 2.6942 1.6600 1.9705 38 1 0.9262 1.6925 1.7673 39 1 1.1621 3.8431 0.4890 40 1 2.9054 3.8244 0.8475 41 1 1.2070 6.0550 1.6421 42 1 2.8608 5.9186 2.2923 43 1 1.9168 10.3150 5.0394 44 1 3.5254 10.5306 5.7709 45 1 3.3256 9.4666 4.3583 46 1 1.7530 8.2927 8.1600 47 1 2.6070 9.8451 7.9912 48 1 0.9987 9.6296 7.2590 49 1 4.3850 7.5899 5.6225 50 1 4.5846 8.6542 7.0349 51 1 3.7309 7.1014 7.2042 52 1 -0.0714 6.2583 5.2705 53 1 -0.7382 6.2807 3.6175 54 1 -1.0480 4.0420 4.5189 55 1 0.6627 3.9576 5.0069 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209059300.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:13 Heat of formation + Delta-G solvation = -142.310777 kcal Electronic energy + Delta-G solvation = -31582.198611 eV Core-core repulsion = 27425.753816 eV Total energy + Delta-G solvation = -4156.444796 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 342.235 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.05915 -40.46999 -38.80900 -38.06839 -36.13614 -34.87500 -34.80568 -34.24949 -31.87186 -30.78813 -29.20710 -28.38928 -28.30625 -27.87962 -25.07164 -24.28652 -23.92968 -22.75212 -21.82666 -21.20976 -20.37448 -19.10184 -18.99364 -17.93581 -17.52928 -17.41731 -16.81529 -16.54194 -16.36720 -16.10252 -15.77846 -15.62753 -15.49904 -15.19898 -14.94775 -14.74074 -14.59332 -14.46943 -14.38944 -14.10406 -13.62822 -13.32851 -13.14381 -13.07217 -13.03216 -12.88635 -12.75116 -12.69260 -12.62472 -12.52891 -12.45046 -12.41283 -12.34975 -12.07230 -11.96351 -11.78465 -11.62498 -11.43130 -11.35625 -11.26705 -11.18996 -11.06963 -10.77224 -9.73967 -8.99019 -8.27127 -6.29120 0.95610 1.33263 1.35500 1.45840 1.64609 2.34298 2.66649 2.72318 3.05399 3.18605 3.62044 3.72686 3.77702 3.87175 3.92927 3.94995 4.00087 4.13956 4.18702 4.29046 4.38140 4.40944 4.44907 4.53830 4.59512 4.61196 4.67261 4.68133 4.74499 4.74624 4.76885 4.80340 4.83183 4.87091 4.88690 4.90511 4.98494 5.07500 5.08851 5.14517 5.22030 5.26041 5.28925 5.32919 5.34538 5.41416 5.46744 5.59219 6.05353 6.15514 6.18264 6.44443 6.71265 6.77710 7.15787 7.34061 8.89499 Molecular weight = 342.24amu Principal moments of inertia in cm(-1) A = 0.013330 B = 0.002509 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.094246 B =11156.665648 C =12759.248527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.054 3.946 3 N -0.542 5.542 4 C 0.170 3.830 5 C -0.511 4.511 6 H 0.039 0.961 7 C 0.008 3.992 8 N -0.948 5.948 9 Si 0.942 3.058 10 H -0.269 1.269 11 H -0.282 1.282 12 H -0.249 1.249 13 C 0.062 3.938 14 C -0.099 4.099 15 C 0.097 3.903 16 H 0.060 0.940 17 C 0.103 3.897 18 N -0.601 5.601 19 C 0.650 3.350 20 O -0.593 6.593 21 O -0.361 6.361 22 C 0.125 3.875 23 C -0.180 4.180 24 C -0.134 4.134 25 C -0.181 4.181 26 C 0.077 3.923 27 C 0.045 3.955 28 O -0.381 6.381 29 H 0.046 0.954 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.029 0.971 34 H 0.032 0.968 35 H -0.020 1.020 36 H 0.266 0.734 37 H 0.022 0.978 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.063 0.937 44 H 0.090 0.910 45 H 0.057 0.943 46 H 0.071 0.929 47 H 0.101 0.899 48 H 0.072 0.928 49 H 0.057 0.943 50 H 0.090 0.910 51 H 0.062 0.938 52 H 0.114 0.886 53 H 0.089 0.911 54 H 0.137 0.863 55 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.236 16.078 27.748 33.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.074 4.074 3 N -0.266 5.266 4 C 0.043 3.957 5 C -0.549 4.549 6 H 0.057 0.943 7 C -0.189 4.189 8 N -0.589 5.589 9 Si 0.766 3.234 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.173 1.173 13 C -0.066 4.066 14 C -0.138 4.138 15 C 0.038 3.962 16 H 0.078 0.922 17 C -0.019 4.019 18 N -0.342 5.342 19 C 0.405 3.595 20 O -0.484 6.484 21 O -0.276 6.276 22 C 0.088 3.912 23 C -0.238 4.238 24 C -0.191 4.191 25 C -0.238 4.238 26 C -0.045 4.045 27 C -0.032 4.032 28 O -0.300 6.300 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.047 0.953 34 H 0.050 0.950 35 H -0.002 1.002 36 H 0.075 0.925 37 H 0.040 0.960 38 H 0.106 0.894 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.106 0.894 42 H 0.109 0.891 43 H 0.082 0.918 44 H 0.109 0.891 45 H 0.076 0.924 46 H 0.090 0.910 47 H 0.119 0.881 48 H 0.091 0.909 49 H 0.076 0.924 50 H 0.109 0.891 51 H 0.081 0.919 52 H 0.132 0.868 53 H 0.107 0.893 54 H 0.154 0.846 55 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.197 16.381 27.110 33.276 hybrid contribution 1.799 -0.343 0.122 1.835 sum -8.398 16.038 27.232 32.701 Atomic orbital electron populations 1.21668 0.93563 1.01656 1.01905 1.21994 0.96814 0.88897 0.99694 1.61897 1.21318 1.18520 1.24844 1.19969 0.86232 0.95661 0.93812 1.21271 0.93969 1.44153 0.95538 0.94253 1.25804 1.02518 0.95042 0.95528 1.70043 1.26890 1.50413 1.11512 0.85794 0.79069 0.79519 0.79057 1.19453 1.20719 1.17312 1.22042 1.00957 0.94404 0.89168 1.21444 1.02494 0.94997 0.94817 1.22265 0.84816 0.92459 0.96698 0.92181 1.22306 1.02484 0.93002 0.84140 1.47085 1.19663 1.43517 1.23888 1.18106 0.82396 0.78952 0.80037 1.90906 1.22542 1.64905 1.70075 1.86280 1.49637 1.57639 1.34030 1.22438 0.89176 0.86650 0.92897 1.22475 1.02964 0.97604 1.00713 1.21874 1.02026 1.02232 0.92921 1.22480 0.96850 1.01816 1.02662 1.22556 0.83015 0.96786 1.02108 1.23119 1.03594 0.91895 0.84584 1.88023 1.29447 1.77451 1.35077 0.93434 0.91343 0.91790 0.92943 0.95264 0.94995 1.00196 0.92514 0.95967 0.89401 0.90397 0.91199 0.89386 0.89061 0.91789 0.89099 0.92402 0.90991 0.88064 0.90938 0.92431 0.89095 0.91872 0.86785 0.89298 0.84580 0.92699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.04 9.96 71.98 0.72 -3.32 16 2 C 0.05 2.09 5.51 86.30 0.48 2.56 16 3 N -0.54 -22.49 4.36 -900.82 -3.92 -26.41 16 4 C 0.17 8.27 3.62 85.56 0.31 8.58 16 5 C -0.51 -29.90 8.79 25.60 0.22 -29.68 16 6 H 0.04 2.57 7.56 -2.91 -0.02 2.54 16 7 C 0.01 0.49 5.47 84.66 0.46 0.95 16 8 N -0.95 -59.99 13.96 21.45 0.30 -59.69 16 9 Si 0.94 44.92 27.47 68.60 1.88 46.81 16 10 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 11 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 12 H -0.25 -11.11 6.54 99.48 0.65 -10.46 16 13 C 0.06 2.04 4.76 86.30 0.41 2.46 16 14 C -0.10 -2.94 4.96 30.59 0.15 -2.79 16 15 C 0.10 2.33 2.78 30.69 0.09 2.42 16 16 H 0.06 1.47 8.14 -2.39 -0.02 1.46 16 17 C 0.10 2.42 5.93 86.35 0.51 2.94 16 18 N -0.60 -12.99 3.03 -948.49 -2.87 -15.86 16 19 C 0.65 15.99 7.75 129.79 1.01 17.00 16 20 O -0.59 -17.95 11.35 19.81 0.22 -17.72 16 21 O -0.36 -7.23 8.58 -55.48 -0.48 -7.71 16 22 C 0.12 2.00 1.13 -10.79 -0.01 1.99 16 23 C -0.18 -3.00 8.37 71.98 0.60 -2.40 16 24 C -0.13 -1.19 8.85 71.98 0.64 -0.56 16 25 C -0.18 -3.06 8.37 71.98 0.60 -2.45 16 26 C 0.08 1.13 6.63 86.22 0.57 1.70 16 27 C 0.05 0.66 6.97 71.94 0.50 1.16 16 28 O -0.38 -8.42 9.85 -148.98 -1.47 -9.89 16 29 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 30 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.06 1.73 6.90 -2.39 -0.02 1.72 16 32 H 0.05 2.40 6.58 -2.39 -0.02 2.38 16 33 H 0.03 1.04 8.00 -2.39 -0.02 1.02 16 34 H 0.03 1.54 5.77 -2.39 -0.01 1.52 16 35 H -0.02 -0.95 7.55 -2.39 -0.02 -0.97 16 36 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 37 H 0.02 0.73 8.00 -2.39 -0.02 0.71 16 38 H 0.09 2.63 6.12 -2.39 -0.01 2.62 16 39 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 40 H 0.07 2.23 6.95 -2.39 -0.02 2.21 16 41 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.09 2.44 7.08 -2.39 -0.02 2.42 16 43 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 44 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.06 1.35 5.88 -2.39 -0.01 1.34 16 46 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 47 H 0.10 0.51 8.14 -2.38 -0.02 0.49 16 48 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 49 H 0.06 1.36 5.88 -2.39 -0.01 1.35 16 50 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 51 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 52 H 0.11 1.33 7.01 -2.39 -0.02 1.31 16 53 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 54 H 0.14 1.23 8.14 -2.39 -0.02 1.21 16 55 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -73.00 418.89 1.72 -71.29 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: 0.79 Total: 18.62 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: 7.26 Total: 0.56 kcal Atomic # 7 Polarization: -95.46 SS G_CDS: -6.49 Total: -101.96 kcal Atomic # 8 Polarization: -33.60 SS G_CDS: -1.72 Total: -35.32 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 1.88 Total: 46.81 kcal Total: -73.00 1.72 -71.29 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209059300.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.022 kcal (2) G-P(sol) polarization free energy of solvation -73.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds