Wall clock time and date at job start Wed Apr 1 2020 01:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42894 * 114.00038 * 2 1 4 4 H 1.08997 * 109.57344 * 29.84074 * 3 2 1 5 5 C 1.53094 * 109.52232 * 269.68443 * 3 2 1 6 6 O 1.42910 * 109.41317 * 297.70550 * 5 3 2 7 7 C 1.42905 * 114.09615 * 298.83884 * 6 5 3 8 8 C 1.53090 * 109.41437 * 61.15879 * 7 6 5 9 9 C 1.53181 * 109.52415 * 149.99898 * 3 2 1 10 10 H 1.08993 * 109.54747 * 182.87949 * 9 3 2 11 11 C 1.53002 * 109.54074 * 303.06094 * 9 3 2 12 12 C 1.50707 * 109.46871 * 185.00108 * 11 9 3 13 13 O 1.21280 * 119.99721 * 4.78290 * 12 11 9 14 14 N 1.34773 * 119.99484 * 184.78959 * 12 11 9 15 15 C 1.46497 * 120.00584 * 5.54204 * 14 12 11 16 16 C 1.52997 * 109.46755 * 90.00381 * 15 14 12 17 17 N 1.46507 * 109.47254 * 180.02562 * 16 15 14 18 18 C 1.46495 * 119.99868 * 89.99473 * 17 16 15 19 19 C 1.36937 * 119.99857 * 270.00069 * 17 16 15 20 20 H 1.08000 * 119.99954 * 144.36310 * 19 17 16 21 21 C 1.38816 * 119.99749 * 324.36297 * 19 17 16 22 22 N 1.31626 * 119.99749 * 156.50359 * 21 19 17 23 23 Si 1.86797 * 120.00136 * 336.50199 * 21 19 17 24 24 H 1.48502 * 109.46872 * 95.27051 * 23 21 19 25 25 H 1.48503 * 109.46974 * 215.26523 * 23 21 19 26 26 H 1.48497 * 109.47028 * 335.27052 * 23 21 19 27 27 C 1.46505 * 119.99594 * 185.55011 * 14 12 11 28 28 C 1.53004 * 109.46803 * 297.75790 * 27 14 12 29 29 C 1.52999 * 109.47489 * 57.75582 * 27 14 12 30 30 H 1.08998 * 109.46974 * 60.00132 * 1 2 3 31 31 H 1.09001 * 109.46887 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47018 * 300.00034 * 1 2 3 33 33 H 1.08999 * 109.47924 * 57.68108 * 5 3 2 34 34 H 1.08996 * 109.48061 * 177.72268 * 5 3 2 35 35 H 1.08996 * 109.48238 * 301.18152 * 7 6 5 36 36 H 1.08995 * 109.49209 * 181.14904 * 7 6 5 37 37 H 1.08995 * 109.52742 * 182.48483 * 8 7 6 38 38 H 1.09003 * 109.57437 * 62.32422 * 8 7 6 39 39 H 1.08998 * 109.46652 * 304.99313 * 11 9 3 40 40 H 1.08996 * 109.47823 * 64.99813 * 11 9 3 41 41 H 1.09001 * 109.47123 * 210.00142 * 15 14 12 42 42 H 1.08997 * 109.46892 * 330.00324 * 15 14 12 43 43 H 1.09002 * 109.47587 * 299.99993 * 16 15 14 44 44 H 1.08997 * 109.47467 * 60.00295 * 16 15 14 45 45 H 1.08999 * 109.47146 * 95.03179 * 18 17 16 46 46 H 1.09005 * 109.47240 * 215.02618 * 18 17 16 47 47 H 1.09004 * 109.47540 * 335.02989 * 18 17 16 48 48 H 0.96996 * 119.99675 * 179.97438 * 22 21 19 49 49 H 1.09000 * 109.47224 * 177.76423 * 27 14 12 50 50 H 1.09000 * 109.46971 * 62.25200 * 28 27 14 51 51 H 1.08996 * 109.47081 * 182.25161 * 28 27 14 52 52 H 1.09003 * 109.47347 * 302.24773 * 28 27 14 53 53 H 1.08997 * 109.46480 * 61.03207 * 29 27 14 54 54 H 1.09003 * 109.47091 * 181.03270 * 29 27 14 55 55 H 1.09001 * 109.47317 * 301.03714 * 29 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 2.0013 0.5110 5 6 2.2256 1.7695 -1.4429 6 8 3.1434 0.8881 -2.0934 7 6 4.4381 0.8451 -1.4901 8 6 4.3116 0.3439 -0.0491 9 6 3.3607 1.2645 0.7219 10 1 3.7806 2.2693 0.7670 11 6 3.1662 0.7268 2.1410 12 6 4.4719 0.8021 2.8900 13 8 5.4383 1.3215 2.3731 14 7 4.5655 0.2920 4.1339 15 6 3.4370 -0.4422 4.7115 16 6 3.5663 -1.9278 4.3690 17 7 2.4374 -2.6620 4.9460 18 6 1.2074 -2.8417 4.1708 19 6 2.5320 -3.1803 6.2100 20 1 1.6654 -3.1938 6.8543 21 6 3.7419 -3.6882 6.6631 22 7 3.9853 -3.7547 7.9549 23 14 5.0244 -4.2774 5.4394 24 1 5.9943 -3.1846 5.1742 25 1 5.7418 -5.4504 6.0005 26 1 4.3569 -4.6655 4.1710 27 6 5.7958 0.4719 4.9087 28 6 6.9580 -0.2126 4.1864 29 6 6.0939 1.9657 5.0529 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.2737 1.7595 -1.9738 34 1 2.6313 2.7812 -1.4426 35 1 4.8727 1.8446 -1.4904 36 1 5.0802 0.1693 -2.0550 37 1 5.2921 0.3521 0.4268 38 1 3.9152 -0.6715 -0.0491 39 1 2.4163 1.3262 2.6571 40 1 2.8334 -0.3101 2.0944 41 1 3.4384 -0.3176 5.7943 42 1 2.5039 -0.0549 4.3023 43 1 3.5649 -2.0525 3.2861 44 1 4.4993 -2.3151 4.7781 45 1 1.2365 -3.8049 3.6614 46 1 0.3480 -2.8108 4.8406 47 1 1.1225 -2.0432 3.4337 48 1 4.8305 -4.1099 8.2715 49 1 5.6709 0.0292 5.8969 50 1 7.1085 0.2568 3.2142 51 1 7.8652 -0.1131 4.7823 52 1 6.7282 -1.2691 4.0481 53 1 5.2742 2.4500 5.5837 54 1 7.0190 2.0991 5.6137 55 1 6.2006 2.4120 4.0643 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284536519.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:47:30 Heat of formation + Delta-G solvation = -121.568468 kcal Electronic energy + Delta-G solvation = -33550.714023 eV Core-core repulsion = 29395.168682 eV Total energy + Delta-G solvation = -4155.545342 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 342.235 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.60601 -40.48875 -38.18120 -37.87995 -36.89390 -35.23485 -34.02470 -33.41746 -31.45510 -30.15720 -29.35874 -28.12340 -27.99186 -27.38269 -25.29453 -24.67481 -24.34073 -22.83796 -22.63926 -20.88680 -19.67058 -18.79551 -18.14542 -17.56716 -17.49207 -17.24227 -16.99753 -16.73897 -16.35447 -16.05355 -15.98270 -15.69940 -15.17877 -15.03391 -15.00345 -14.79556 -14.52146 -14.44101 -14.25918 -14.04282 -13.80859 -13.61512 -13.47089 -13.33730 -13.10915 -12.97725 -12.96502 -12.78710 -12.64881 -12.46789 -12.30871 -12.19440 -12.12396 -12.10738 -11.87192 -11.85580 -11.64372 -11.44346 -11.25245 -10.96324 -10.67284 -10.44360 -10.00515 -9.75408 -8.77941 -8.23442 -5.57568 1.24286 1.36437 1.44906 1.66382 2.00253 2.36785 2.78119 3.02794 3.11519 3.33787 3.57856 3.72902 3.78310 3.87846 3.94585 4.00872 4.10740 4.16631 4.30022 4.32736 4.35804 4.41151 4.46683 4.49466 4.55436 4.57059 4.58209 4.61889 4.68048 4.71922 4.74130 4.75612 4.81558 4.86303 4.88745 4.91226 4.93525 4.98322 5.00956 5.06673 5.15065 5.16804 5.17606 5.21310 5.29873 5.38212 5.68404 5.91159 6.14909 6.17633 6.45192 6.50268 6.94835 7.24286 7.60616 8.01819 8.96035 Molecular weight = 342.24amu Principal moments of inertia in cm(-1) A = 0.011377 B = 0.004159 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.436338 B = 6731.508644 C = 8027.435592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.393 6.393 3 C 0.059 3.941 4 H 0.093 0.907 5 C 0.037 3.963 6 O -0.395 6.395 7 C 0.065 3.935 8 C -0.144 4.144 9 C -0.062 4.062 10 H 0.093 0.907 11 C -0.128 4.128 12 C 0.516 3.484 13 O -0.558 6.558 14 N -0.607 5.607 15 C 0.106 3.894 16 C 0.125 3.875 17 N -0.621 5.621 18 C 0.123 3.877 19 C -0.256 4.256 20 H 0.053 0.947 21 C -0.008 4.008 22 N -0.939 5.939 23 Si 0.926 3.074 24 H -0.273 1.273 25 H -0.311 1.311 26 H -0.272 1.272 27 C 0.134 3.866 28 C -0.161 4.161 29 C -0.151 4.151 30 H 0.050 0.950 31 H 0.086 0.914 32 H 0.053 0.947 33 H 0.105 0.895 34 H 0.074 0.926 35 H 0.060 0.940 36 H 0.094 0.906 37 H 0.071 0.929 38 H 0.054 0.946 39 H 0.111 0.889 40 H 0.093 0.907 41 H 0.066 0.934 42 H 0.097 0.903 43 H 0.052 0.948 44 H 0.031 0.969 45 H 0.008 0.992 46 H 0.043 0.957 47 H 0.067 0.933 48 H 0.262 0.738 49 H 0.073 0.927 50 H 0.072 0.928 51 H 0.074 0.926 52 H 0.029 0.971 53 H 0.056 0.944 54 H 0.076 0.924 55 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.533 15.433 -16.865 23.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.312 6.312 3 C 0.001 3.999 4 H 0.111 0.889 5 C -0.039 4.039 6 O -0.314 6.314 7 C -0.011 4.011 8 C -0.182 4.182 9 C -0.081 4.081 10 H 0.111 0.889 11 C -0.167 4.167 12 C 0.306 3.694 13 O -0.438 6.438 14 N -0.340 5.340 15 C -0.019 4.019 16 C -0.002 4.002 17 N -0.346 5.346 18 C -0.021 4.021 19 C -0.386 4.386 20 H 0.071 0.929 21 C -0.205 4.205 22 N -0.583 5.583 23 Si 0.757 3.243 24 H -0.201 1.201 25 H -0.240 1.240 26 H -0.197 1.197 27 C 0.031 3.969 28 C -0.219 4.219 29 C -0.209 4.209 30 H 0.069 0.931 31 H 0.104 0.896 32 H 0.071 0.929 33 H 0.123 0.877 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.113 0.887 37 H 0.089 0.911 38 H 0.073 0.927 39 H 0.129 0.871 40 H 0.111 0.889 41 H 0.085 0.915 42 H 0.115 0.885 43 H 0.070 0.930 44 H 0.049 0.951 45 H 0.026 0.974 46 H 0.062 0.938 47 H 0.086 0.914 48 H 0.072 0.928 49 H 0.091 0.909 50 H 0.091 0.909 51 H 0.093 0.907 52 H 0.048 0.952 53 H 0.075 0.925 54 H 0.094 0.906 55 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.907 15.363 -17.179 23.229 hybrid contribution 0.701 -0.778 0.476 1.150 sum -2.206 14.585 -16.703 22.284 Atomic orbital electron populations 1.22944 0.80061 1.03421 1.00755 1.87988 1.20739 1.27406 1.95041 1.22898 0.94675 0.86027 0.96310 0.88918 1.23228 0.94433 0.93333 0.92939 1.87911 1.22917 1.66280 1.54285 1.22583 0.84530 1.01151 0.92882 1.22133 1.00375 0.99335 0.96374 1.21019 0.94387 1.00373 0.92344 0.88878 1.21706 0.94850 1.04617 0.95553 1.20988 0.90972 0.76847 0.80579 1.90550 1.39771 1.46144 1.67339 1.48253 1.15790 1.54194 1.15730 1.22187 0.88719 0.91929 0.99086 1.21539 0.90647 0.91724 0.96256 1.44135 1.14246 1.61286 1.14940 1.21213 0.87591 0.98606 0.94668 1.18739 0.96994 1.33808 0.89083 0.92902 1.25835 0.99762 0.98708 0.96172 1.69973 1.25207 1.48784 1.14366 0.86164 0.80115 0.77415 0.80624 1.20076 1.23950 1.19671 1.21099 0.84088 0.97361 0.94350 1.22152 0.98223 0.99075 1.02403 1.22035 1.02128 0.93811 1.02926 0.93118 0.89570 0.92862 0.87683 0.90750 0.92226 0.88738 0.91071 0.92748 0.87138 0.88917 0.91546 0.88467 0.92973 0.95133 0.97366 0.93830 0.91391 0.92833 0.90857 0.90885 0.90723 0.95195 0.92456 0.90552 0.91441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 10.82 113.37 1.23 1.59 16 2 O -0.39 -8.30 9.07 -141.81 -1.29 -9.59 16 3 C 0.06 1.02 2.43 30.69 0.07 1.09 16 4 H 0.09 1.15 7.79 -2.39 -0.02 1.14 16 5 C 0.04 0.62 6.49 72.01 0.47 1.08 16 6 O -0.39 -9.01 10.70 -141.81 -1.52 -10.53 16 7 C 0.07 1.37 6.84 72.01 0.49 1.87 16 8 C -0.14 -3.50 4.97 30.68 0.15 -3.35 16 9 C -0.06 -1.30 1.75 -10.67 -0.02 -1.32 16 10 H 0.09 1.88 7.88 -2.39 -0.02 1.86 16 11 C -0.13 -2.92 3.35 29.85 0.10 -2.82 16 12 C 0.52 14.77 6.73 87.66 0.59 15.36 16 13 O -0.56 -17.49 10.44 -3.03 -0.03 -17.53 16 14 N -0.61 -18.79 2.42 -797.83 -1.93 -20.73 16 15 C 0.11 3.53 5.45 86.38 0.47 4.00 16 16 C 0.12 4.99 4.80 86.38 0.41 5.41 16 17 N -0.62 -27.52 2.51 -726.93 -1.83 -29.35 16 18 C 0.12 4.40 10.69 127.77 1.37 5.76 16 19 C -0.26 -13.87 9.95 84.03 0.84 -13.03 16 20 H 0.05 3.13 8.06 -2.91 -0.02 3.10 16 21 C -0.01 -0.43 5.30 84.86 0.45 0.02 16 22 N -0.94 -56.80 13.97 21.65 0.30 -56.50 16 23 Si 0.93 46.27 25.04 68.60 1.72 47.98 16 24 H -0.27 -13.10 6.42 99.48 0.64 -12.46 16 25 H -0.31 -15.84 7.11 99.48 0.71 -15.13 16 26 H -0.27 -13.41 7.11 99.48 0.71 -12.71 16 27 C 0.13 4.18 3.28 44.99 0.15 4.33 16 28 C -0.16 -5.08 9.12 71.98 0.66 -4.43 16 29 C -0.15 -3.92 9.10 71.98 0.66 -3.27 16 30 H 0.05 0.60 7.86 -2.39 -0.02 0.58 16 31 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.05 0.65 8.09 -2.39 -0.02 0.63 16 33 H 0.11 1.42 7.86 -2.39 -0.02 1.40 16 34 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.07 1.97 6.25 -2.39 -0.01 1.96 16 38 H 0.05 1.52 7.83 -2.39 -0.02 1.51 16 39 H 0.11 2.05 7.83 -2.39 -0.02 2.03 16 40 H 0.09 2.36 6.82 -2.39 -0.02 2.34 16 41 H 0.07 2.50 7.90 -2.39 -0.02 2.48 16 42 H 0.10 2.71 6.54 -2.39 -0.02 2.70 16 43 H 0.05 1.95 7.45 -2.39 -0.02 1.93 16 44 H 0.03 1.41 3.09 -2.39 -0.01 1.40 16 45 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 46 H 0.04 1.51 8.08 -2.38 -0.02 1.50 16 47 H 0.07 1.94 8.03 -2.39 -0.02 1.92 16 48 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 49 H 0.07 2.49 7.78 -2.39 -0.02 2.47 16 50 H 0.07 2.35 6.21 -2.39 -0.01 2.34 16 51 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 52 H 0.03 1.07 7.92 -2.39 -0.02 1.05 16 53 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 54 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 55 H 0.07 1.88 6.17 -2.39 -0.01 1.86 16 Total: -1.00 -67.37 414.76 4.28 -63.09 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: 0.77 Total: 20.85 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: 8.08 Total: 12.29 kcal Atomic # 7 Polarization: -103.12 SS G_CDS: -3.46 Total: -106.57 kcal Atomic # 8 Polarization: -34.81 SS G_CDS: -2.84 Total: -37.64 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 1.72 Total: 47.98 kcal Total: -67.37 4.28 -63.09 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284536519.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.480 kcal (2) G-P(sol) polarization free energy of solvation -67.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds