Wall clock time and date at job start Wed Apr 1 2020 01:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47301 * 2 1 4 4 H 1.08997 * 109.47253 * 304.99856 * 3 2 1 5 5 C 1.53003 * 109.47226 * 185.00024 * 3 2 1 6 6 O 1.42902 * 109.47296 * 65.00024 * 3 2 1 7 7 C 1.42904 * 113.99732 * 210.00302 * 6 3 2 8 8 C 1.50703 * 109.46806 * 180.02562 * 7 6 3 9 9 O 1.21277 * 119.99779 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99954 * 179.97438 * 8 7 6 11 11 C 1.46920 * 120.63261 * 179.97438 * 10 8 7 12 12 C 1.53194 * 108.89662 * 126.29598 * 11 10 8 13 13 C 1.53345 * 109.14512 * 54.57796 * 12 11 10 14 14 N 1.46509 * 109.41404 * 178.67721 * 13 12 11 15 15 C 1.36937 * 120.00027 * 65.02353 * 14 13 12 16 16 H 1.08001 * 119.99913 * 321.82942 * 15 14 13 17 17 C 1.38809 * 119.99711 * 141.83118 * 15 14 13 18 18 N 1.31618 * 120.00460 * 339.25427 * 17 15 14 19 19 Si 1.86801 * 119.99857 * 159.26107 * 17 15 14 20 20 H 1.48497 * 109.47246 * 89.99607 * 19 17 15 21 21 H 1.48497 * 109.46971 * 209.99744 * 19 17 15 22 22 H 1.48503 * 109.47087 * 329.99850 * 19 17 15 23 23 C 1.46496 * 119.99479 * 245.01968 * 14 13 12 24 24 C 1.53000 * 109.46901 * 90.00487 * 23 14 13 25 25 O 1.42893 * 109.47422 * 64.99582 * 24 23 14 26 26 C 1.42898 * 114.00429 * 180.02562 * 25 24 23 27 27 C 1.53045 * 109.61013 * 298.71186 * 13 12 11 28 28 C 1.46923 * 120.62961 * 359.97326 * 10 8 7 29 29 H 1.09006 * 109.47047 * 60.00035 * 1 2 3 30 30 H 1.09000 * 109.47365 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47016 * 300.00257 * 1 2 3 32 32 H 1.09005 * 109.47016 * 239.99743 * 2 1 3 33 33 H 1.09001 * 109.46603 * 119.99979 * 2 1 3 34 34 H 1.08997 * 109.46868 * 300.00068 * 5 3 2 35 35 H 1.09003 * 109.46840 * 59.99601 * 5 3 2 36 36 H 1.09000 * 109.47301 * 179.97438 * 5 3 2 37 37 H 1.08995 * 109.47419 * 59.99812 * 7 6 3 38 38 H 1.09001 * 109.46875 * 299.99599 * 7 6 3 39 39 H 1.08996 * 109.58610 * 246.15857 * 11 10 8 40 40 H 1.09005 * 109.58672 * 6.43644 * 11 10 8 41 41 H 1.08994 * 109.49658 * 174.65955 * 12 11 10 42 42 H 1.09004 * 109.49181 * 294.75578 * 12 11 10 43 43 H 1.08995 * 109.42742 * 58.75317 * 13 12 11 44 44 H 0.96998 * 120.00429 * 179.97438 * 18 17 15 45 45 H 1.09005 * 109.47064 * 210.00337 * 23 14 13 46 46 H 1.08998 * 109.47787 * 329.99998 * 23 14 13 47 47 H 1.09008 * 109.46951 * 184.99243 * 24 23 14 48 48 H 1.09000 * 109.46982 * 304.99202 * 24 23 14 49 49 H 1.09005 * 109.46922 * 299.99942 * 26 25 24 50 50 H 1.09003 * 109.47288 * 59.99428 * 26 25 24 51 51 H 1.09000 * 109.47905 * 180.02562 * 26 25 24 52 52 H 1.09004 * 109.49438 * 301.42673 * 27 13 12 53 53 H 1.08996 * 109.52479 * 181.34266 * 27 13 12 54 54 H 1.09000 * 109.58896 * 353.41776 * 28 10 8 55 55 H 1.09000 * 109.58677 * 113.70288 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5649 1.4442 -0.1257 6 8 1.6620 2.0814 1.2211 7 6 1.4560 3.4903 1.1002 8 6 1.0640 4.0574 2.4403 9 8 0.9698 3.3268 3.4037 10 7 0.8180 5.3763 2.5680 11 6 0.4343 5.9439 3.8677 12 6 1.3811 7.1006 4.2030 13 6 1.3733 8.1081 3.0469 14 7 2.2529 9.2328 3.3751 15 6 3.6001 9.0305 3.5143 16 1 3.9651 8.1298 3.9854 17 6 4.4965 9.9831 3.0499 18 7 4.1176 10.8549 2.1395 19 14 6.2408 10.0278 3.7168 20 1 7.1121 9.1617 2.8826 21 1 6.7490 11.4226 3.6807 22 1 6.2480 9.5344 5.1175 23 6 1.6911 10.5738 3.5543 24 6 1.3105 10.7753 5.0225 25 8 2.4902 10.7487 5.8284 26 6 2.2446 10.9282 7.2246 27 6 1.8707 7.4278 1.7694 28 6 0.9285 6.2740 1.4102 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.9995 0.9052 0.7161 35 1 3.8532 0.9568 -1.0571 36 1 3.9282 2.4719 -0.1262 37 1 0.6619 3.6808 0.3783 38 1 2.3770 3.9644 0.7608 39 1 -0.5900 6.3129 3.8172 40 1 0.5085 5.1761 4.6380 41 1 1.0482 7.5896 5.1184 42 1 2.3912 6.7152 4.3424 43 1 0.3584 8.4740 2.8918 44 1 4.7439 11.5209 1.8152 45 1 2.4317 11.3196 3.2654 46 1 0.8038 10.6825 2.9307 47 1 0.8119 11.7375 5.1399 48 1 0.6380 9.9769 5.3363 49 1 1.7651 11.8934 7.3880 50 1 1.5916 10.1327 7.5839 51 1 3.1895 10.8959 7.7670 52 1 2.8762 7.0396 1.9318 53 1 1.8872 8.1511 0.9542 54 1 1.3312 5.7248 0.5591 55 1 -0.0560 6.6680 1.1580 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483819265.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:38:02 Heat of formation + Delta-G solvation = -128.569434 kcal Electronic energy + Delta-G solvation = -31961.536151 eV Core-core repulsion = 27805.687225 eV Total energy + Delta-G solvation = -4155.848926 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 342.235 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.26143 -39.54546 -38.92444 -38.20535 -36.51112 -34.74413 -33.79034 -32.42736 -32.04039 -30.78396 -29.87544 -28.71859 -27.15323 -26.29212 -24.75960 -24.46288 -23.94118 -22.38293 -21.93952 -21.56041 -20.11160 -18.53700 -18.07316 -17.76781 -17.26768 -17.09551 -16.69487 -16.63717 -16.51691 -15.75008 -15.68502 -15.49822 -15.32067 -15.18851 -14.78954 -14.74625 -14.60204 -14.23837 -14.05683 -13.70921 -13.65471 -13.40880 -13.23846 -13.13215 -12.95019 -12.90798 -12.72648 -12.56730 -12.52881 -12.34617 -12.26444 -12.23040 -12.06819 -11.89316 -11.79030 -11.51379 -11.48714 -11.45148 -11.11762 -10.72187 -10.57986 -10.38388 -10.29190 -9.63551 -8.40269 -7.69890 -5.27834 1.43074 1.47729 1.54466 1.56795 1.78113 2.58424 2.87009 3.23339 3.40619 3.53007 3.65384 3.90311 3.96664 4.07112 4.15398 4.18810 4.22101 4.26275 4.29329 4.37607 4.43533 4.45582 4.48018 4.53718 4.63821 4.65547 4.68025 4.73406 4.73768 4.80552 4.82482 4.84304 4.85390 4.92635 4.93828 5.03725 5.07311 5.11879 5.15579 5.21167 5.24451 5.29577 5.45648 5.47670 5.64066 5.70326 5.78192 5.89241 6.18876 6.43722 6.53887 6.71010 7.14808 7.32395 8.01895 8.50528 9.25670 Molecular weight = 342.24amu Principal moments of inertia in cm(-1) A = 0.014199 B = 0.002753 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.441323 B =10167.179555 C =11148.789200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C 0.076 3.924 4 H 0.083 0.917 5 C -0.177 4.177 6 O -0.387 6.387 7 C 0.049 3.951 8 C 0.509 3.491 9 O -0.579 6.579 10 N -0.603 5.603 11 C 0.122 3.878 12 C -0.126 4.126 13 C 0.173 3.827 14 N -0.583 5.583 15 C -0.218 4.218 16 H 0.033 0.967 17 C -0.022 4.022 18 N -0.913 5.913 19 Si 0.932 3.068 20 H -0.289 1.289 21 H -0.295 1.295 22 H -0.286 1.286 23 C 0.141 3.859 24 C 0.054 3.946 25 O -0.398 6.398 26 C 0.027 3.973 27 C -0.123 4.123 28 C 0.113 3.887 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.038 0.962 32 H 0.099 0.901 33 H 0.055 0.945 34 H 0.049 0.951 35 H 0.088 0.912 36 H 0.053 0.947 37 H 0.111 0.889 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.030 0.970 43 H 0.070 0.930 44 H 0.246 0.754 45 H 0.065 0.935 46 H 0.058 0.942 47 H 0.045 0.955 48 H 0.039 0.961 49 H 0.047 0.953 50 H 0.041 0.959 51 H 0.078 0.922 52 H 0.038 0.962 53 H 0.065 0.935 54 H 0.103 0.897 55 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.623 -12.074 -6.300 17.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C 0.019 3.981 4 H 0.101 0.899 5 C -0.234 4.234 6 O -0.306 6.306 7 C -0.030 4.030 8 C 0.298 3.702 9 O -0.459 6.459 10 N -0.337 5.337 11 C -0.001 4.001 12 C -0.166 4.166 13 C 0.066 3.934 14 N -0.303 5.303 15 C -0.349 4.349 16 H 0.051 0.949 17 C -0.218 4.218 18 N -0.559 5.559 19 Si 0.763 3.237 20 H -0.216 1.216 21 H -0.222 1.222 22 H -0.212 1.212 23 C 0.014 3.986 24 C -0.025 4.025 25 O -0.317 6.317 26 C -0.070 4.070 27 C -0.163 4.163 28 C -0.009 4.009 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.117 0.883 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.107 0.893 36 H 0.072 0.928 37 H 0.129 0.871 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.049 0.951 43 H 0.088 0.912 44 H 0.055 0.945 45 H 0.083 0.917 46 H 0.076 0.924 47 H 0.063 0.937 48 H 0.057 0.943 49 H 0.066 0.934 50 H 0.060 0.940 51 H 0.096 0.904 52 H 0.057 0.943 53 H 0.083 0.917 54 H 0.121 0.879 55 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.421 -12.444 -5.792 17.233 hybrid contribution 1.351 0.684 0.816 1.720 sum -9.070 -11.760 -4.976 15.663 Atomic orbital electron populations 1.21720 0.95340 1.02038 1.01643 1.21659 0.96675 0.94250 1.03077 1.22473 0.94778 0.94587 0.86253 0.89896 1.22320 0.95683 1.02414 1.02980 1.88027 1.89729 1.18646 1.34186 1.22346 1.03011 0.83583 0.94098 1.20858 0.76414 0.81940 0.91001 1.90660 1.53598 1.59514 1.42083 1.48183 1.67558 1.06494 1.11480 1.21552 0.98587 0.95181 0.84743 1.22263 0.98164 0.96220 0.99966 1.20588 0.93454 0.87604 0.91732 1.43864 1.02760 1.03533 1.80108 1.18582 0.82826 1.04320 1.29142 0.94911 1.25378 0.99375 1.00311 0.96752 1.70029 1.35344 1.21394 1.29119 0.85842 0.83249 0.76197 0.78410 1.21631 1.22150 1.21184 1.20992 0.97452 0.89401 0.90735 1.23305 0.86770 0.98163 0.94260 1.88142 1.32253 1.93798 1.17486 1.22791 1.01736 0.99712 0.82756 1.22091 0.98456 0.96820 0.98963 1.22027 1.01147 0.90674 0.87036 0.91704 0.91871 0.94282 0.88283 0.92597 0.93156 0.89314 0.92775 0.87104 0.89063 0.89143 0.91234 0.91836 0.95111 0.91174 0.94487 0.91687 0.92368 0.93688 0.94269 0.93437 0.94021 0.90376 0.94344 0.91686 0.87908 0.88454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 9.81 71.98 0.71 -1.65 16 2 C -0.12 -1.88 5.64 30.59 0.17 -1.71 16 3 C 0.08 1.36 2.72 30.59 0.08 1.44 16 4 H 0.08 1.10 7.79 -2.39 -0.02 1.08 16 5 C -0.18 -2.98 9.53 71.98 0.69 -2.30 16 6 O -0.39 -10.13 9.06 -129.94 -1.18 -11.30 16 7 C 0.05 1.11 4.57 71.24 0.33 1.44 16 8 C 0.51 15.76 7.78 87.66 0.68 16.44 16 9 O -0.58 -23.27 15.91 16.02 0.25 -23.01 16 10 N -0.60 -16.92 2.97 -818.85 -2.43 -19.35 16 11 C 0.12 3.59 6.42 86.36 0.55 4.15 16 12 C -0.13 -4.41 5.41 30.77 0.17 -4.24 16 13 C 0.17 6.24 2.60 45.12 0.12 6.35 16 14 N -0.58 -26.41 2.34 -677.30 -1.58 -28.00 16 15 C -0.22 -11.50 7.60 84.03 0.64 -10.86 16 16 H 0.03 1.86 7.10 -2.91 -0.02 1.84 16 17 C -0.02 -1.18 4.97 84.86 0.42 -0.76 16 18 N -0.91 -51.56 11.47 21.65 0.25 -51.31 16 19 Si 0.93 46.20 29.60 68.60 2.03 48.23 16 20 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 21 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 22 H -0.29 -14.33 7.11 99.48 0.71 -13.63 16 23 C 0.14 6.09 5.70 86.38 0.49 6.58 16 24 C 0.05 2.02 6.28 71.98 0.45 2.47 16 25 O -0.40 -17.02 10.18 -148.98 -1.52 -18.54 16 26 C 0.03 0.84 11.01 113.37 1.25 2.09 16 27 C -0.12 -4.13 5.23 30.69 0.16 -3.97 16 28 C 0.11 2.62 6.34 86.38 0.55 3.17 16 29 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 30 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.04 0.81 7.82 -2.38 -0.02 0.79 16 32 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 33 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.05 0.96 7.87 -2.39 -0.02 0.94 16 37 H 0.11 1.73 7.89 -2.39 -0.02 1.71 16 38 H 0.09 1.86 7.42 -2.39 -0.02 1.84 16 39 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.07 2.28 7.00 -2.38 -0.02 2.27 16 41 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 42 H 0.03 1.28 7.25 -2.38 -0.02 1.27 16 43 H 0.07 2.23 7.77 -2.39 -0.02 2.21 16 44 H 0.25 13.69 8.31 -92.71 -0.77 12.92 16 45 H 0.07 3.38 5.53 -2.38 -0.01 3.37 16 46 H 0.06 2.23 7.88 -2.39 -0.02 2.22 16 47 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 48 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 49 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 50 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 51 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 52 H 0.04 1.54 7.61 -2.38 -0.02 1.52 16 53 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 54 H 0.10 1.82 5.93 -2.39 -0.01 1.80 16 55 H 0.10 1.76 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -72.24 429.77 4.11 -68.13 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: 0.83 Total: 16.51 kcal Atomic # 6 Polarization: 11.19 SS G_CDS: 7.45 Total: 18.64 kcal Atomic # 7 Polarization: -94.89 SS G_CDS: -3.77 Total: -98.66 kcal Atomic # 8 Polarization: -50.42 SS G_CDS: -2.44 Total: -52.85 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Total: -72.24 4.11 -68.13 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483819265.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.441 kcal (2) G-P(sol) polarization free energy of solvation -72.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds