Wall clock time and date at job start Wed Apr 1 2020 02:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42904 * 114.00142 * 2 1 4 4 C 1.52997 * 109.47082 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47497 * 64.99580 * 4 3 2 6 6 C 1.36935 * 119.99798 * 269.99898 * 5 4 3 7 7 H 1.08001 * 119.99746 * 141.80218 * 6 5 4 8 8 C 1.38813 * 120.00325 * 321.79777 * 6 5 4 9 9 N 1.31618 * 119.99725 * 339.28181 * 8 6 5 10 10 Si 1.86794 * 120.00185 * 159.27863 * 8 6 5 11 11 H 1.48503 * 109.46891 * 90.00145 * 10 8 6 12 12 H 1.48496 * 109.47473 * 210.00582 * 10 8 6 13 13 H 1.48505 * 109.47340 * 330.00833 * 10 8 6 14 14 C 1.46503 * 120.00064 * 89.99715 * 5 4 3 15 15 C 1.53030 * 109.46355 * 244.77778 * 14 5 4 16 16 C 1.53192 * 109.31713 * 178.62791 * 15 14 5 17 17 N 1.46934 * 108.77216 * 54.63368 * 16 15 14 18 18 C 1.34775 * 120.62712 * 126.37229 * 17 16 15 19 19 O 1.21284 * 120.00362 * 359.97438 * 18 17 16 20 20 C 1.50699 * 120.00006 * 180.02562 * 18 17 16 21 21 C 1.52995 * 109.47344 * 180.02562 * 20 18 17 22 22 C 1.53001 * 109.47192 * 179.97438 * 21 20 18 23 23 H 1.09001 * 109.47065 * 304.99289 * 22 21 20 24 24 C 1.53000 * 109.46977 * 184.99764 * 22 21 20 25 25 O 1.42901 * 109.47291 * 64.99615 * 22 21 20 26 26 C 1.42894 * 113.99809 * 210.00085 * 25 22 21 27 27 C 1.46916 * 118.74033 * 306.64788 * 17 16 15 28 28 C 1.52763 * 109.01285 * 53.30452 * 27 17 16 29 29 H 1.08999 * 109.47456 * 60.00194 * 1 2 3 30 30 H 1.08999 * 109.47544 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47480 * 300.00082 * 1 2 3 32 32 H 1.08997 * 109.47311 * 59.99444 * 3 2 1 33 33 H 1.09005 * 109.46366 * 300.00056 * 3 2 1 34 34 H 1.08998 * 109.46994 * 304.99238 * 4 3 2 35 35 H 1.09002 * 109.46882 * 184.99813 * 4 3 2 36 36 H 0.97005 * 120.00092 * 179.97438 * 9 8 6 37 37 H 1.08999 * 109.46044 * 4.75844 * 14 5 4 38 38 H 1.09002 * 109.49744 * 58.67311 * 15 14 5 39 39 H 1.09006 * 109.52536 * 298.59991 * 15 14 5 40 40 H 1.08999 * 109.58532 * 294.84921 * 16 15 14 41 41 H 1.08996 * 109.70616 * 174.49170 * 16 15 14 42 42 H 1.08994 * 109.47203 * 59.99514 * 20 18 17 43 43 H 1.09004 * 109.46714 * 299.99848 * 20 18 17 44 44 H 1.08994 * 109.47440 * 59.99571 * 21 20 18 45 45 H 1.09004 * 109.47019 * 299.99573 * 21 20 18 46 46 H 1.09002 * 109.47344 * 299.99796 * 24 22 21 47 47 H 1.09004 * 109.47191 * 179.97438 * 24 22 21 48 48 H 1.09003 * 109.47178 * 60.00147 * 24 22 21 49 49 H 1.09005 * 109.47451 * 299.99931 * 26 25 22 50 50 H 1.09000 * 109.47553 * 60.00173 * 26 25 22 51 51 H 1.09002 * 109.47080 * 180.02562 * 26 25 22 52 52 H 1.08999 * 109.58784 * 173.14325 * 27 17 16 53 53 H 1.09004 * 109.58812 * 293.56797 * 27 17 16 54 54 H 1.08994 * 109.57027 * 185.55373 * 28 27 17 55 55 H 1.09006 * 109.38153 * 65.51597 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5643 -1.2526 6 6 4.0967 -0.7971 -1.3366 7 1 3.8119 -1.3096 -2.2436 8 6 4.5856 -1.5185 -0.2561 9 7 5.3005 -0.9143 0.6692 10 14 4.2288 -3.3466 -0.1152 11 1 5.3025 -4.1143 -0.7956 12 1 4.1768 -3.7318 1.3180 13 1 2.9233 -3.6470 -0.7563 14 6 4.2863 1.4005 -2.4148 15 6 3.2911 1.1021 -3.5383 16 6 3.5977 2.0024 -4.7392 17 7 5.0062 1.8230 -5.1173 18 6 5.3421 1.5042 -6.3830 19 8 4.4782 1.3623 -7.2223 20 6 6.7912 1.3230 -6.7551 21 6 6.8960 0.9685 -8.2397 22 6 8.3672 0.7852 -8.6176 23 1 8.9269 1.6796 -8.3439 24 6 8.4814 0.5539 -10.1257 25 8 8.9010 -0.3426 -7.9210 26 6 10.2972 -0.2411 -7.6344 27 6 6.0409 1.9916 -4.0880 28 6 5.7072 1.0969 -2.8956 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6885 1.8464 0.8899 33 1 1.6885 1.8463 -0.8901 34 1 3.8513 0.5683 0.8410 35 1 3.9785 2.1765 0.0889 36 1 5.6418 -1.4182 1.4245 37 1 4.2144 2.4516 -2.1355 38 1 2.2775 1.2962 -3.1875 39 1 3.3793 0.0570 -3.8352 40 1 3.4215 3.0437 -4.4696 41 1 2.9567 1.7284 -5.5771 42 1 7.2218 0.5193 -6.1580 43 1 7.3339 2.2488 -6.5637 44 1 6.4654 1.7725 -8.8366 45 1 6.3532 0.0429 -8.4315 46 1 7.9217 -0.3405 -10.3996 47 1 9.5296 0.4237 -10.3951 48 1 8.0743 1.4142 -10.6571 49 1 10.8537 -0.1462 -8.5668 50 1 10.4777 0.6358 -7.0127 51 1 10.6255 -1.1358 -7.1053 52 1 7.0113 1.7081 -4.4955 53 1 6.0681 3.0321 -3.7642 54 1 6.4133 1.2874 -2.0874 55 1 5.7735 0.0517 -3.1979 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670994130.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:10 Heat of formation + Delta-G solvation = -132.790808 kcal Electronic energy + Delta-G solvation = -31946.007665 eV Core-core repulsion = 27789.975687 eV Total energy + Delta-G solvation = -4156.031979 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 342.235 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.22033 -39.45458 -39.03289 -38.26974 -36.50116 -34.74986 -33.74785 -32.43528 -32.06438 -30.89375 -29.71439 -27.54666 -27.15966 -26.63218 -25.61436 -24.43036 -23.83042 -22.35378 -21.97358 -21.36169 -19.87082 -18.44199 -17.95527 -17.74220 -17.25798 -16.85698 -16.66658 -16.52883 -16.46671 -15.96358 -15.87546 -15.67799 -15.46509 -15.18635 -14.91538 -14.84591 -14.46631 -14.16893 -13.95806 -13.62575 -13.42377 -13.39270 -13.24998 -13.13343 -13.08899 -12.91204 -12.72732 -12.55197 -12.40706 -12.32521 -12.23515 -12.19826 -12.06180 -11.99057 -11.78771 -11.51334 -11.50637 -11.46506 -11.11646 -10.74682 -10.47980 -10.38531 -10.29438 -9.57726 -8.40312 -7.70056 -5.27984 1.43269 1.47249 1.56418 1.66421 2.10861 2.58543 2.93069 3.23035 3.40566 3.53024 3.65734 3.83918 3.99313 4.11096 4.17218 4.25800 4.29269 4.35733 4.39139 4.43202 4.48679 4.52275 4.54008 4.54363 4.63481 4.65230 4.66151 4.69961 4.75087 4.81872 4.82624 4.85972 4.87938 4.92423 4.93736 4.94080 5.01210 5.03686 5.09101 5.16828 5.22859 5.25030 5.35155 5.50858 5.65830 5.72038 5.77862 5.88841 6.37997 6.49711 6.53736 6.70760 7.21568 7.32359 8.01665 8.50369 9.25660 Molecular weight = 342.24amu Principal moments of inertia in cm(-1) A = 0.012667 B = 0.002885 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.936348 B = 9703.394781 C =10876.443362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.398 6.398 3 C 0.054 3.946 4 C 0.141 3.859 5 N -0.584 5.584 6 C -0.218 4.218 7 H 0.032 0.968 8 C -0.021 4.021 9 N -0.914 5.914 10 Si 0.933 3.067 11 H -0.290 1.290 12 H -0.294 1.294 13 H -0.285 1.285 14 C 0.173 3.827 15 C -0.126 4.126 16 C 0.121 3.879 17 N -0.608 5.608 18 C 0.508 3.492 19 O -0.591 6.591 20 C -0.130 4.130 21 C -0.097 4.097 22 C 0.085 3.915 23 H 0.084 0.916 24 C -0.172 4.172 25 O -0.411 6.411 26 C 0.025 3.975 27 C 0.116 3.884 28 C -0.124 4.124 29 H 0.041 0.959 30 H 0.078 0.922 31 H 0.047 0.953 32 H 0.046 0.954 33 H 0.039 0.961 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.246 0.754 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.029 0.971 40 H 0.087 0.913 41 H 0.071 0.929 42 H 0.097 0.903 43 H 0.122 0.878 44 H 0.085 0.915 45 H 0.049 0.951 46 H 0.050 0.950 47 H 0.066 0.934 48 H 0.078 0.922 49 H 0.051 0.949 50 H 0.054 0.946 51 H 0.085 0.915 52 H 0.102 0.898 53 H 0.093 0.907 54 H 0.062 0.938 55 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.767 11.274 -13.054 18.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.317 6.317 3 C -0.025 4.025 4 C 0.014 3.986 5 N -0.303 5.303 6 C -0.349 4.349 7 H 0.050 0.950 8 C -0.218 4.218 9 N -0.559 5.559 10 Si 0.763 3.237 11 H -0.217 1.217 12 H -0.220 1.220 13 H -0.211 1.211 14 C 0.067 3.933 15 C -0.166 4.166 16 C -0.002 4.002 17 N -0.340 5.340 18 C 0.299 3.701 19 O -0.473 6.473 20 C -0.169 4.169 21 C -0.135 4.135 22 C 0.027 3.973 23 H 0.102 0.898 24 C -0.230 4.230 25 O -0.331 6.331 26 C -0.071 4.071 27 C -0.006 4.006 28 C -0.164 4.164 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.055 0.945 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.048 0.952 40 H 0.105 0.895 41 H 0.089 0.911 42 H 0.115 0.885 43 H 0.140 0.860 44 H 0.104 0.896 45 H 0.068 0.932 46 H 0.069 0.931 47 H 0.085 0.915 48 H 0.097 0.903 49 H 0.069 0.931 50 H 0.073 0.927 51 H 0.103 0.897 52 H 0.120 0.880 53 H 0.111 0.889 54 H 0.081 0.919 55 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 5.400 10.822 -13.265 17.951 hybrid contribution -0.557 -1.288 0.518 1.496 sum 4.844 9.534 -12.747 16.639 Atomic orbital electron populations 1.22791 0.81825 1.02384 0.99997 1.88145 1.19375 1.28996 1.95168 1.23300 0.97067 0.83806 0.98289 1.20986 0.89432 0.96459 0.91679 1.43865 1.75697 1.02064 1.08669 1.18578 1.33683 0.83380 0.99300 0.94998 1.25378 0.97407 0.99450 0.99529 1.70035 1.36138 1.35983 1.13755 0.85836 0.77633 0.83957 0.76255 1.21703 1.22009 1.21131 1.20517 0.91997 0.93844 0.86942 1.22196 1.00097 0.98417 0.95886 1.21531 0.82040 0.99943 0.96735 1.48287 1.08040 1.68514 1.09156 1.21305 0.92593 0.74858 0.81383 1.90633 1.53093 1.53360 1.50199 1.21671 0.91512 1.05161 0.98589 1.21421 0.95251 1.02212 0.94609 1.22247 0.93731 0.89188 0.92111 0.89844 1.22257 1.02611 1.02770 0.95349 1.87944 1.24858 1.42993 1.77321 1.22932 0.80953 1.02909 1.00353 1.21851 0.90871 1.00677 0.87231 1.22008 0.98493 0.98925 0.96930 0.94026 0.90362 0.93412 0.93626 0.94309 0.91679 0.92444 0.94482 0.91308 0.91994 0.95236 0.89458 0.91087 0.88494 0.86037 0.89611 0.93193 0.93116 0.91513 0.90263 0.93051 0.92714 0.89652 0.87974 0.88900 0.91948 0.94632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.85 11.01 113.37 1.25 2.10 16 2 O -0.40 -17.21 10.18 -148.98 -1.52 -18.72 16 3 C 0.05 2.06 6.28 71.98 0.45 2.51 16 4 C 0.14 6.21 5.70 86.38 0.49 6.70 16 5 N -0.58 -26.99 2.34 -677.91 -1.59 -28.58 16 6 C -0.22 -11.75 7.60 84.03 0.64 -11.12 16 7 H 0.03 1.85 7.09 -2.91 -0.02 1.82 16 8 C -0.02 -1.17 4.97 84.86 0.42 -0.75 16 9 N -0.91 -52.27 11.47 21.65 0.25 -52.02 16 10 Si 0.93 46.82 29.60 68.60 2.03 48.85 16 11 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 12 H -0.29 -14.72 7.11 99.48 0.71 -14.01 16 13 H -0.29 -14.46 7.11 99.48 0.71 -13.76 16 14 C 0.17 6.46 2.60 45.02 0.12 6.58 16 15 C -0.13 -4.51 5.38 30.67 0.16 -4.35 16 16 C 0.12 3.60 6.44 86.36 0.56 4.15 16 17 N -0.61 -17.31 2.98 -819.74 -2.44 -19.75 16 18 C 0.51 15.09 7.70 87.66 0.67 15.77 16 19 O -0.59 -21.87 15.39 -3.04 -0.05 -21.91 16 20 C -0.13 -2.82 3.94 29.85 0.12 -2.70 16 21 C -0.10 -2.09 4.21 30.59 0.13 -1.96 16 22 C 0.08 1.45 2.72 30.59 0.08 1.54 16 23 H 0.08 1.05 7.79 -2.39 -0.02 1.03 16 24 C -0.17 -2.58 9.53 71.98 0.69 -1.90 16 25 O -0.41 -8.80 9.88 -148.98 -1.47 -10.27 16 26 C 0.02 0.36 10.82 113.37 1.23 1.59 16 27 C 0.12 2.86 6.31 86.22 0.54 3.41 16 28 C -0.12 -4.34 5.21 30.53 0.16 -4.19 16 29 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 31 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 34 H 0.07 3.43 5.54 -2.39 -0.01 3.42 16 35 H 0.06 2.25 7.88 -2.39 -0.02 2.23 16 36 H 0.25 13.85 8.31 -92.70 -0.77 13.08 16 37 H 0.07 2.27 7.77 -2.39 -0.02 2.25 16 38 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.03 1.26 7.24 -2.38 -0.02 1.24 16 40 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.07 2.32 7.00 -2.39 -0.02 2.30 16 42 H 0.10 2.25 7.36 -2.39 -0.02 2.23 16 43 H 0.12 1.81 7.95 -2.38 -0.02 1.79 16 44 H 0.09 1.75 8.10 -2.39 -0.02 1.73 16 45 H 0.05 1.36 8.10 -2.38 -0.02 1.34 16 46 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.07 0.84 7.87 -2.38 -0.02 0.82 16 48 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 49 H 0.05 0.60 7.87 -2.38 -0.02 0.58 16 50 H 0.05 0.65 8.09 -2.39 -0.02 0.63 16 51 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 52 H 0.10 2.05 5.93 -2.39 -0.01 2.04 16 53 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 54 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 55 H 0.03 1.49 7.61 -2.38 -0.02 1.48 16 Total: -1.00 -71.02 428.80 3.76 -67.27 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: 0.83 Total: 17.77 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: 7.71 Total: 17.38 kcal Atomic # 7 Polarization: -96.58 SS G_CDS: -3.78 Total: -100.36 kcal Atomic # 8 Polarization: -47.87 SS G_CDS: -3.04 Total: -50.91 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Total: -71.02 3.76 -67.27 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670994130.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.523 kcal (2) G-P(sol) polarization free energy of solvation -71.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds