Wall clock time and date at job start Wed Apr 1 2020 03:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.47043 * 2 1 4 4 O 1.42902 * 109.47390 * 240.00308 * 2 1 3 5 5 C 1.42900 * 114.00068 * 89.99883 * 4 2 1 6 6 C 1.52998 * 109.47229 * 180.02562 * 5 4 2 7 7 H 1.09000 * 109.47978 * 54.97233 * 6 5 4 8 8 C 1.53093 * 109.48150 * 174.99503 * 6 5 4 9 9 C 1.53180 * 109.16172 * 177.58856 * 8 6 5 10 10 C 1.53171 * 109.03856 * 303.02405 * 9 8 6 11 11 C 1.53092 * 109.16438 * 56.98193 * 10 9 8 12 12 O 1.42905 * 109.41469 * 302.38741 * 11 10 9 13 13 C 1.50698 * 109.47325 * 119.99891 * 2 1 3 14 14 O 1.21281 * 119.99726 * 94.58999 * 13 2 1 15 15 N 1.34783 * 120.00071 * 274.58988 * 13 2 1 16 16 C 1.46494 * 119.99876 * 4.95076 * 15 13 2 17 17 C 1.46497 * 119.99546 * 184.94939 * 15 13 2 18 18 C 1.53001 * 109.47205 * 90.00237 * 17 15 13 19 19 C 1.53002 * 109.47451 * 179.97438 * 18 17 15 20 20 N 1.46490 * 109.47522 * 179.97438 * 19 18 17 21 21 C 1.46499 * 120.00451 * 270.00501 * 20 19 18 22 22 C 1.36936 * 119.99959 * 90.00000 * 20 19 18 23 23 H 1.08006 * 119.99875 * 352.99731 * 22 20 19 24 24 C 1.38805 * 120.00506 * 172.71771 * 22 20 19 25 25 N 1.31627 * 119.99650 * 331.66027 * 24 22 20 26 26 Si 1.86805 * 120.00463 * 151.65873 * 24 22 20 27 27 H 1.48494 * 109.46780 * 94.99555 * 26 24 22 28 28 H 1.48503 * 109.47068 * 214.99623 * 26 24 22 29 29 H 1.48493 * 109.46634 * 334.99330 * 26 24 22 30 30 H 1.09001 * 109.47362 * 296.78067 * 1 2 3 31 31 H 1.08991 * 109.47439 * 56.78119 * 1 2 3 32 32 H 1.09007 * 109.46939 * 176.78192 * 1 2 3 33 33 H 1.09006 * 109.46843 * 300.00316 * 5 4 2 34 34 H 1.09000 * 109.46961 * 59.99736 * 5 4 2 35 35 H 1.08992 * 109.52284 * 297.49783 * 8 6 5 36 36 H 1.08999 * 109.51895 * 57.62572 * 8 6 5 37 37 H 1.09005 * 109.53843 * 62.89287 * 9 8 6 38 38 H 1.08994 * 109.54156 * 183.06569 * 9 8 6 39 39 H 1.09000 * 109.52099 * 176.88219 * 10 9 8 40 40 H 1.09004 * 109.52578 * 297.01075 * 10 9 8 41 41 H 1.09000 * 109.48153 * 62.36989 * 11 10 9 42 42 H 1.09000 * 109.48334 * 182.40943 * 11 10 9 43 43 H 1.09008 * 109.46849 * 265.63160 * 16 15 13 44 44 H 1.08998 * 109.47222 * 25.63493 * 16 15 13 45 45 H 1.08998 * 109.46900 * 145.63549 * 16 15 13 46 46 H 1.09002 * 109.47643 * 329.99914 * 17 15 13 47 47 H 1.09005 * 109.46891 * 209.99676 * 17 15 13 48 48 H 1.09002 * 109.47084 * 59.99335 * 18 17 15 49 49 H 1.08998 * 109.47147 * 299.99531 * 18 17 15 50 50 H 1.09007 * 109.46668 * 59.99896 * 19 18 17 51 51 H 1.08998 * 109.46984 * 300.00148 * 19 18 17 52 52 H 1.09005 * 109.46870 * 268.32266 * 21 20 19 53 53 H 1.09005 * 109.46782 * 28.32165 * 21 20 19 54 54 H 1.08996 * 109.47775 * 148.32353 * 21 20 19 55 55 H 0.96996 * 119.99842 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.2001 0.1830 -2.2941 6 6 2.7080 -0.6406 -3.4792 7 1 2.0196 -1.4635 -3.6715 8 6 2.7968 0.2514 -4.7202 9 6 3.3626 -0.5646 -5.8866 10 6 4.7252 -1.1355 -5.4823 11 6 4.5619 -1.9740 -4.2118 12 8 4.0030 -1.1633 -3.1762 13 6 2.0324 -0.7104 1.2304 14 8 2.3137 -1.8889 1.1778 15 7 2.1690 -0.0360 2.3894 16 6 1.7277 1.3578 2.4822 17 6 2.7587 -0.6969 3.5562 18 6 4.2739 -0.4849 3.5509 19 6 4.8898 -1.1747 4.7698 20 7 6.3406 -0.9722 4.7644 21 6 7.2121 -1.9348 4.0859 22 6 6.8823 0.1168 5.3934 23 1 6.2375 0.8845 5.7952 24 6 8.2599 0.2313 5.5199 25 7 9.0080 -0.8503 5.5732 26 14 9.0520 1.9205 5.6144 27 1 9.2458 2.2973 7.0376 28 1 10.3680 1.8892 4.9270 29 1 8.1720 2.9174 4.9537 30 1 -0.3634 0.4630 0.9174 31 1 -0.3634 0.5629 -0.8596 32 1 -0.3633 -1.0261 -0.0577 33 1 1.2538 0.6548 -2.5588 34 1 2.9319 0.9515 -2.0449 35 1 1.8026 0.6156 -4.9789 36 1 3.4525 1.0975 -4.5145 37 1 2.6811 -1.3813 -6.1245 38 1 3.4795 0.0786 -6.7587 39 1 5.1101 -1.7632 -6.2860 40 1 5.4212 -0.3181 -5.2933 41 1 3.8978 -2.8145 -4.4139 42 1 5.5356 -2.3478 -3.8953 43 1 2.5716 2.0198 2.2876 44 1 0.9450 1.5409 1.7460 45 1 1.3383 1.5499 3.4819 46 1 2.5410 -1.7643 3.5179 47 1 2.3357 -0.2723 4.4667 48 1 4.4916 0.5824 3.5892 49 1 4.6970 -0.9095 2.6405 50 1 4.6721 -2.2421 4.7318 51 1 4.4667 -0.7498 5.6801 52 1 7.5311 -2.6987 4.7950 53 1 6.6669 -2.4040 3.2669 54 1 8.0866 -1.4178 3.6910 55 1 9.9706 -0.7703 5.6612 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673491181.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:14 Heat of formation + Delta-G solvation = -130.168870 kcal Electronic energy + Delta-G solvation = -31060.180164 eV Core-core repulsion = 26904.261881 eV Total energy + Delta-G solvation = -4155.918283 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 342.235 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.27591 -40.43062 -38.68903 -37.89842 -36.71873 -34.58574 -34.34552 -33.47150 -32.38855 -31.36995 -28.18657 -28.04814 -27.82433 -27.13629 -25.27968 -24.85197 -23.44055 -23.10113 -21.94701 -21.23440 -20.29932 -18.77600 -18.50735 -17.92647 -17.61315 -17.00570 -16.95520 -16.66767 -16.50045 -15.93504 -15.74987 -15.55412 -15.42864 -15.29384 -15.08592 -14.67800 -14.63203 -14.37842 -14.11156 -13.78188 -13.60549 -13.49534 -13.39348 -13.27500 -13.11743 -13.03905 -12.86478 -12.75403 -12.54971 -12.50363 -12.34061 -12.31991 -12.19224 -12.10608 -12.00487 -11.82296 -11.61375 -11.47398 -11.26631 -10.99987 -10.54524 -10.45638 -10.40915 -9.71544 -8.94528 -7.90906 -5.17051 1.43848 1.46268 1.48628 1.58729 1.84111 2.51956 2.72443 2.80122 3.22055 3.45165 3.66005 3.77841 3.87563 3.89591 3.91720 4.00115 4.05640 4.09146 4.13444 4.24634 4.26684 4.36023 4.36996 4.44711 4.51520 4.56437 4.62872 4.63556 4.67369 4.70640 4.73724 4.77570 4.82127 4.83892 4.86812 4.89865 4.92937 5.03864 5.08890 5.14872 5.19643 5.21387 5.24507 5.35536 5.47584 5.50438 5.55511 5.66983 6.04877 6.24748 6.31107 6.40583 7.09539 7.14459 7.85791 8.29691 9.17975 Molecular weight = 342.24amu Principal moments of inertia in cm(-1) A = 0.009501 B = 0.002523 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2946.400500 B =11094.524935 C =12782.580736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.073 3.927 3 H 0.107 0.893 4 O -0.387 6.387 5 C 0.062 3.938 6 C 0.085 3.915 7 H 0.060 0.940 8 C -0.141 4.141 9 C -0.121 4.121 10 C -0.154 4.154 11 C 0.051 3.949 12 O -0.406 6.406 13 C 0.502 3.498 14 O -0.576 6.576 15 N -0.612 5.612 16 C 0.063 3.937 17 C 0.124 3.876 18 C -0.130 4.130 19 C 0.154 3.846 20 N -0.624 5.624 21 C 0.173 3.827 22 C -0.261 4.261 23 H 0.083 0.917 24 C -0.061 4.061 25 N -0.935 5.935 26 Si 0.960 3.040 27 H -0.284 1.284 28 H -0.296 1.296 29 H -0.269 1.269 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.053 0.947 33 H 0.103 0.897 34 H 0.056 0.944 35 H 0.100 0.900 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.065 0.935 41 H 0.052 0.948 42 H 0.088 0.912 43 H 0.059 0.941 44 H 0.100 0.900 45 H 0.096 0.904 46 H 0.064 0.936 47 H 0.109 0.891 48 H 0.057 0.943 49 H 0.021 0.979 50 H 0.040 0.960 51 H 0.061 0.939 52 H -0.004 1.004 53 H 0.017 0.983 54 H 0.032 0.968 55 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.298 7.762 -22.258 32.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.012 3.988 3 H 0.125 0.875 4 O -0.306 6.306 5 C -0.014 4.014 6 C 0.027 3.973 7 H 0.078 0.922 8 C -0.179 4.179 9 C -0.158 4.158 10 C -0.191 4.191 11 C -0.025 4.025 12 O -0.326 6.326 13 C 0.291 3.709 14 O -0.455 6.455 15 N -0.346 5.346 16 C -0.078 4.078 17 C 0.001 3.999 18 C -0.171 4.171 19 C 0.027 3.973 20 N -0.347 5.347 21 C 0.028 3.972 22 C -0.391 4.391 23 H 0.101 0.899 24 C -0.255 4.255 25 N -0.583 5.583 26 Si 0.788 3.212 27 H -0.211 1.211 28 H -0.223 1.223 29 H -0.194 1.194 30 H 0.112 0.888 31 H 0.117 0.883 32 H 0.072 0.928 33 H 0.121 0.879 34 H 0.074 0.926 35 H 0.119 0.881 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.105 0.895 39 H 0.107 0.893 40 H 0.083 0.917 41 H 0.070 0.930 42 H 0.106 0.894 43 H 0.078 0.922 44 H 0.119 0.881 45 H 0.114 0.886 46 H 0.082 0.918 47 H 0.127 0.873 48 H 0.075 0.925 49 H 0.040 0.960 50 H 0.058 0.942 51 H 0.079 0.921 52 H 0.014 0.986 53 H 0.036 0.964 54 H 0.051 0.949 55 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -21.873 6.971 -22.093 31.861 hybrid contribution 1.217 0.325 0.110 1.264 sum -20.656 7.296 -21.983 31.035 Atomic orbital electron populations 1.22236 0.90870 1.03564 1.05277 1.22098 0.96935 0.96236 0.83547 0.87501 1.88079 1.86947 1.35599 1.20024 1.22891 1.01027 0.92457 0.85030 1.22278 0.84646 0.96302 0.94053 0.92156 1.22117 1.03676 0.98445 0.93668 1.21600 0.95995 1.00180 0.98016 1.22183 0.98699 1.00612 0.97649 1.22722 0.98800 0.92843 0.88160 1.88022 1.33333 1.68426 1.42821 1.21206 0.77281 0.86997 0.85464 1.90683 1.51342 1.18317 1.85137 1.47986 1.60973 1.14788 1.10840 1.22258 1.00796 0.79204 1.05576 1.21426 0.91925 0.98406 0.88145 1.22284 0.95195 1.00884 0.98724 1.20788 0.82692 0.97555 0.96248 1.44311 1.01851 1.27099 1.61478 1.20576 0.92759 0.91295 0.92600 1.19574 0.90685 0.97422 1.31381 0.89936 1.25548 0.97350 1.00248 1.02364 1.70400 1.04630 1.28548 1.54688 0.85365 0.77517 0.80852 0.77485 1.21111 1.22260 1.19369 0.88794 0.88341 0.92829 0.87938 0.92560 0.88120 0.90981 0.91166 0.89499 0.89273 0.91659 0.92957 0.89406 0.92205 0.88139 0.88569 0.91759 0.87268 0.92466 0.95992 0.94176 0.92115 0.98613 0.96443 0.94929 0.94262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 9.23 71.98 0.66 -1.58 16 2 C 0.07 1.58 2.28 29.85 0.07 1.65 16 3 H 0.11 1.70 6.70 -2.38 -0.02 1.68 16 4 O -0.39 -10.69 9.61 -126.48 -1.22 -11.90 16 5 C 0.06 1.16 5.41 71.98 0.39 1.55 16 6 C 0.08 1.67 2.93 30.62 0.09 1.76 16 7 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 8 C -0.14 -1.74 5.42 30.69 0.17 -1.57 16 9 C -0.12 -1.35 6.03 30.71 0.19 -1.17 16 10 C -0.15 -2.22 6.14 30.68 0.19 -2.04 16 11 C 0.05 1.06 6.84 72.01 0.49 1.55 16 12 O -0.41 -11.17 10.37 -144.42 -1.50 -12.67 16 13 C 0.50 15.54 6.89 87.66 0.60 16.14 16 14 O -0.58 -24.46 16.23 14.64 0.24 -24.22 16 15 N -0.61 -15.72 2.87 -846.76 -2.43 -18.15 16 16 C 0.06 0.92 9.95 127.77 1.27 2.19 16 17 C 0.12 3.64 5.49 86.38 0.47 4.11 16 18 C -0.13 -4.92 5.86 30.60 0.18 -4.74 16 19 C 0.15 6.58 5.66 86.38 0.49 7.07 16 20 N -0.62 -33.66 2.93 -726.95 -2.13 -35.79 16 21 C 0.17 9.57 9.10 127.77 1.16 10.74 16 22 C -0.26 -14.86 9.67 84.03 0.81 -14.04 16 23 H 0.08 4.43 7.97 -2.91 -0.02 4.40 16 24 C -0.06 -3.54 4.82 84.86 0.41 -3.13 16 25 N -0.94 -58.06 10.86 21.65 0.24 -57.82 16 26 Si 0.96 46.07 29.64 68.60 2.03 48.11 16 27 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 28 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 29 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 30 H 0.09 0.89 6.68 -2.39 -0.02 0.88 16 31 H 0.10 0.78 7.94 -2.39 -0.02 0.77 16 32 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 33 H 0.10 1.06 7.94 -2.38 -0.02 1.04 16 34 H 0.06 1.06 8.08 -2.39 -0.02 1.04 16 35 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 38 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 41 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 44 H 0.10 0.86 4.94 -2.39 -0.01 0.84 16 45 H 0.10 1.05 7.95 -2.39 -0.02 1.03 16 46 H 0.06 2.13 7.36 -2.39 -0.02 2.11 16 47 H 0.11 2.46 7.93 -2.38 -0.02 2.44 16 48 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 49 H 0.02 0.96 8.14 -2.39 -0.02 0.95 16 50 H 0.04 1.68 8.07 -2.38 -0.02 1.66 16 51 H 0.06 2.41 8.04 -2.39 -0.02 2.39 16 52 H 0.00 -0.26 7.92 -2.38 -0.02 -0.28 16 53 H 0.02 0.87 8.06 -2.38 -0.02 0.85 16 54 H 0.03 1.93 6.45 -2.39 -0.02 1.91 16 55 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 Total: -1.00 -84.61 431.74 3.70 -80.91 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: 0.83 Total: 13.05 kcal Atomic # 6 Polarization: 10.85 SS G_CDS: 7.64 Total: 18.49 kcal Atomic # 7 Polarization: -107.44 SS G_CDS: -4.33 Total: -111.77 kcal Atomic # 8 Polarization: -46.31 SS G_CDS: -2.48 Total: -48.79 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.11 kcal Total: -84.61 3.70 -80.91 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673491181.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.257 kcal (2) G-P(sol) polarization free energy of solvation -84.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds