Wall clock time and date at job start Wed Apr 1 2020 01:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42894 * 114.00280 * 2 1 4 4 C 1.52992 * 109.47657 * 184.47970 * 3 2 1 5 5 N 1.46907 * 109.46926 * 70.59919 * 4 3 2 6 6 C 1.46903 * 111.00022 * 299.43184 * 5 4 3 7 7 C 1.50695 * 109.47224 * 301.60994 * 6 5 4 8 8 H 1.08005 * 120.00391 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00094 * 180.02562 * 7 6 5 10 10 N 1.31519 * 119.99906 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00277 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.47095 * 359.97438 * 11 9 7 13 13 H 1.48496 * 109.47518 * 239.99621 * 11 9 7 14 14 H 1.48507 * 109.47239 * 119.99794 * 11 9 7 15 15 C 1.46899 * 111.00067 * 63.38957 * 5 4 3 16 16 C 1.52998 * 109.47164 * 73.21711 * 15 5 4 17 17 H 1.09000 * 112.84828 * 43.31273 * 16 15 5 18 18 C 1.53777 * 113.61412 * 174.51424 * 16 15 5 19 19 C 1.53781 * 87.08071 * 139.98184 * 18 16 15 20 20 H 1.08996 * 113.61218 * 89.20261 * 19 18 16 21 21 N 1.46505 * 113.61027 * 220.01832 * 19 18 16 22 22 C 1.34778 * 119.99804 * 204.99982 * 21 19 18 23 23 O 1.21509 * 119.99889 * 0.02562 * 22 21 19 24 24 O 1.34638 * 120.00099 * 179.97438 * 22 21 19 25 25 C 1.45192 * 117.00060 * 180.02562 * 24 22 21 26 26 C 1.53005 * 109.47583 * 59.99784 * 25 24 22 27 27 C 1.53004 * 109.47496 * 180.02562 * 25 24 22 28 28 C 1.53006 * 109.47230 * 299.99744 * 25 24 22 29 29 C 1.53773 * 87.08199 * 334.56580 * 19 18 16 30 30 H 1.09006 * 109.47074 * 184.91498 * 1 2 3 31 31 H 1.09000 * 109.47364 * 304.91544 * 1 2 3 32 32 H 1.08999 * 109.47430 * 64.92390 * 1 2 3 33 33 H 1.09005 * 109.46681 * 64.47466 * 3 2 1 34 34 H 1.08999 * 109.46930 * 304.48370 * 3 2 1 35 35 H 1.09003 * 109.47115 * 310.60139 * 4 3 2 36 36 H 1.08994 * 109.47484 * 190.59816 * 4 3 2 37 37 H 1.08994 * 109.46783 * 181.60479 * 6 5 4 38 38 H 1.09000 * 109.47072 * 61.60456 * 6 5 4 39 39 H 0.96996 * 119.99784 * 0.02562 * 10 9 7 40 40 H 1.08995 * 109.46972 * 193.22069 * 15 5 4 41 41 H 1.08999 * 109.46966 * 313.21827 * 15 5 4 42 42 H 1.09000 * 113.61286 * 254.53155 * 18 16 15 43 43 H 1.08995 * 113.61674 * 25.42944 * 18 16 15 44 44 H 0.96998 * 120.00240 * 25.00202 * 21 19 18 45 45 H 1.09000 * 109.46354 * 59.99878 * 26 25 24 46 46 H 1.08996 * 109.46958 * 179.97438 * 26 25 24 47 47 H 1.08995 * 109.46647 * 300.00275 * 26 25 24 48 48 H 1.09006 * 109.46776 * 59.99186 * 27 25 24 49 49 H 1.08990 * 109.47605 * 179.97438 * 27 25 24 50 50 H 1.09004 * 109.46431 * 300.00392 * 27 25 24 51 51 H 1.09007 * 109.46953 * 60.00136 * 28 25 24 52 52 H 1.08997 * 109.47525 * 179.97438 * 28 25 24 53 53 H 1.09001 * 109.47352 * 300.00639 * 28 25 24 54 54 H 1.09002 * 113.61441 * 270.88757 * 29 19 18 55 55 H 1.09001 * 113.61568 * 139.98343 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5314 1.1864 -0.1127 5 7 3.8883 0.7314 -1.4631 6 6 3.3017 -0.5851 -1.7472 7 6 3.7833 -1.5810 -0.7240 8 1 4.4581 -1.2676 0.0589 9 6 3.3635 -2.8928 -0.7878 10 7 2.5422 -3.2747 -1.7414 11 14 3.9610 -4.1275 0.4802 12 1 4.8708 -3.4510 1.4394 13 1 4.6908 -5.2253 -0.2034 14 1 2.7969 -4.6879 1.2124 15 6 3.4844 1.7171 -2.4747 16 6 4.4198 2.9261 -2.4107 17 1 5.4679 2.6453 -2.3069 18 6 4.1660 3.9608 -3.5197 19 6 4.4041 5.0443 -2.4547 20 1 5.4478 5.3447 -2.3632 21 7 3.4912 6.1850 -2.5639 22 6 3.8567 7.3891 -2.0813 23 8 4.9436 7.5288 -1.5562 24 8 3.0181 8.4376 -2.1821 25 6 3.4781 9.7040 -1.6412 26 6 4.7587 10.1313 -2.3614 27 6 2.3981 10.7684 -1.8456 28 6 3.7621 9.5470 -0.1460 29 6 3.9669 4.0032 -1.4108 30 1 -0.3633 -1.0239 0.0881 31 1 -0.3634 0.5882 0.8427 32 1 -0.3634 0.4355 -0.9308 33 1 1.7535 1.8174 0.9274 34 1 1.6265 1.8739 -0.8471 35 1 3.8949 0.4669 0.6211 36 1 3.9868 2.1587 0.0753 37 1 3.6050 -0.9108 -2.7422 38 1 2.2148 -0.5158 -1.7031 39 1 2.2323 -2.6336 -2.4000 40 1 3.5414 1.2656 -3.4650 41 1 2.4612 2.0387 -2.2804 42 1 4.9192 3.9499 -4.3075 43 1 3.1472 3.9451 -3.9065 44 1 2.6238 6.0735 -2.9834 45 1 4.5563 10.2431 -3.4266 46 1 5.1037 11.0822 -1.9556 47 1 5.5278 9.3729 -2.2153 48 1 1.4860 10.4638 -1.3322 49 1 2.7432 11.7190 -1.4392 50 1 2.1954 10.8803 -2.9108 51 1 4.5314 8.7887 0.0001 52 1 4.1079 10.4976 0.2600 53 1 2.8498 9.2426 0.3671 54 1 2.8936 3.9992 -1.2211 55 1 4.5593 4.0267 -0.4961 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891938086.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:48:09 Heat of formation + Delta-G solvation = -122.160392 kcal Electronic energy + Delta-G solvation = -31545.376694 eV Core-core repulsion = 27389.805685 eV Total energy + Delta-G solvation = -4155.571009 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 342.235 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.88808 -40.72881 -39.35704 -37.97668 -37.08801 -35.38443 -34.77825 -33.96737 -30.70569 -29.48855 -28.35274 -28.28615 -27.46098 -26.60206 -26.46597 -24.71537 -24.42979 -22.70438 -21.38271 -21.07540 -20.39050 -19.09093 -18.58690 -17.73334 -17.59986 -17.52693 -17.14936 -16.71244 -16.44770 -16.02245 -15.72640 -15.60415 -15.47622 -15.38404 -15.11145 -14.52466 -14.28088 -14.02234 -13.57324 -13.51710 -13.40152 -13.33384 -13.17759 -13.03443 -12.95443 -12.88537 -12.85378 -12.80706 -12.64668 -12.50608 -12.41975 -12.31389 -12.16677 -12.00248 -11.91037 -11.76994 -11.48178 -11.37378 -11.18979 -11.07047 -10.52701 -10.48442 -10.27209 -10.08981 -8.80245 -8.46034 -6.08689 1.19668 1.54626 1.64628 1.75776 1.79831 2.64927 3.01886 3.15237 3.32863 3.39484 3.52218 3.68520 3.76366 3.80736 3.84041 3.91909 3.96005 4.11217 4.26994 4.34200 4.42110 4.47379 4.53328 4.57676 4.62464 4.62556 4.63061 4.74319 4.76162 4.77458 4.77564 4.80135 4.84814 4.86642 4.88893 4.92706 5.00865 5.03492 5.12168 5.16661 5.27776 5.29193 5.29962 5.36871 5.49005 5.57585 5.62456 5.97350 6.18597 6.43666 6.44758 6.59374 6.65602 6.89944 7.36311 7.66177 8.94287 Molecular weight = 342.24amu Principal moments of inertia in cm(-1) A = 0.022096 B = 0.002095 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.910334 B =13362.088810 C =13741.477431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.382 6.382 3 C 0.027 3.973 4 C 0.066 3.934 5 N -0.538 5.538 6 C 0.192 3.808 7 C -0.559 4.559 8 H 0.041 0.959 9 C -0.038 4.038 10 N -0.947 5.947 11 Si 1.116 2.884 12 H -0.276 1.276 13 H -0.284 1.284 14 H -0.285 1.285 15 C 0.064 3.936 16 C -0.095 4.095 17 H 0.093 0.907 18 C -0.124 4.124 19 C 0.146 3.854 20 H 0.108 0.892 21 N -0.689 5.689 22 C 0.644 3.356 23 O -0.594 6.594 24 O -0.370 6.370 25 C 0.124 3.876 26 C -0.179 4.179 27 C -0.136 4.136 28 C -0.180 4.180 29 C -0.143 4.143 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.037 0.963 33 H 0.059 0.941 34 H 0.050 0.950 35 H 0.058 0.942 36 H 0.101 0.899 37 H -0.025 1.025 38 H 0.004 0.996 39 H 0.251 0.749 40 H 0.054 0.946 41 H 0.036 0.964 42 H 0.087 0.913 43 H 0.100 0.900 44 H 0.416 0.584 45 H 0.062 0.938 46 H 0.089 0.911 47 H 0.061 0.939 48 H 0.068 0.932 49 H 0.101 0.899 50 H 0.070 0.930 51 H 0.061 0.939 52 H 0.090 0.910 53 H 0.060 0.940 54 H 0.087 0.913 55 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.172 28.972 -0.976 29.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.301 6.301 3 C -0.050 4.050 4 C -0.062 4.062 5 N -0.261 5.261 6 C 0.066 3.934 7 C -0.597 4.597 8 H 0.059 0.941 9 C -0.234 4.234 10 N -0.586 5.586 11 Si 0.940 3.060 12 H -0.201 1.201 13 H -0.210 1.210 14 H -0.211 1.211 15 C -0.064 4.064 16 C -0.114 4.114 17 H 0.111 0.889 18 C -0.163 4.163 19 C 0.043 3.957 20 H 0.126 0.874 21 N -0.348 5.348 22 C 0.398 3.602 23 O -0.485 6.485 24 O -0.285 6.285 25 C 0.088 3.912 26 C -0.236 4.236 27 C -0.193 4.193 28 C -0.238 4.238 29 C -0.182 4.182 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.056 0.944 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.119 0.881 37 H -0.007 1.007 38 H 0.021 0.979 39 H 0.060 0.940 40 H 0.073 0.927 41 H 0.054 0.946 42 H 0.106 0.894 43 H 0.118 0.882 44 H 0.253 0.747 45 H 0.081 0.919 46 H 0.108 0.892 47 H 0.080 0.920 48 H 0.087 0.913 49 H 0.120 0.880 50 H 0.089 0.911 51 H 0.080 0.920 52 H 0.108 0.892 53 H 0.079 0.921 54 H 0.105 0.895 55 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.114 27.353 -0.263 27.377 hybrid contribution -1.351 1.321 -0.711 2.019 sum -2.464 28.674 -0.974 28.797 Atomic orbital electron populations 1.22731 0.82080 1.02143 0.99963 1.88450 1.19252 1.27595 1.94754 1.23300 0.96501 0.85206 1.00039 1.22198 0.91499 1.00711 0.91769 1.62098 1.59344 1.02604 1.02044 1.19675 0.93433 0.86586 0.93741 1.22075 1.28713 0.95797 1.13155 0.94078 1.26935 0.95075 1.00283 1.01117 1.70837 1.33758 1.37921 1.16117 0.82930 0.75790 0.73679 0.73592 1.20134 1.21017 1.21113 1.22107 0.96478 0.92697 0.95162 1.22249 1.00140 0.91947 0.97088 0.88912 1.23344 1.03899 0.92408 0.96604 1.22465 0.94178 0.81780 0.97319 0.87368 1.44806 1.21871 1.05963 1.62168 1.18371 0.82240 0.81844 0.77733 1.90893 1.23722 1.84663 1.49211 1.86313 1.46474 1.19126 1.76598 1.22398 0.96080 0.79227 0.93472 1.22467 0.97173 1.03290 1.00710 1.21885 0.97231 0.96518 1.03649 1.22477 1.02673 1.04277 0.94323 1.23610 1.01863 0.94750 0.97962 0.91290 0.92504 0.94441 0.92312 0.93175 0.92397 0.88077 1.00680 0.97868 0.93975 0.92735 0.94572 0.89426 0.88173 0.74727 0.91893 0.89183 0.91995 0.91324 0.88025 0.91124 0.92044 0.89162 0.92129 0.89453 0.91310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.93 11.01 113.37 1.25 2.18 16 2 O -0.38 -16.35 7.00 -148.98 -1.04 -17.39 16 3 C 0.03 0.94 5.74 71.98 0.41 1.36 16 4 C 0.07 2.47 5.33 86.30 0.46 2.93 16 5 N -0.54 -22.34 4.71 -900.82 -4.24 -26.58 16 6 C 0.19 10.04 3.44 85.55 0.29 10.34 16 7 C -0.56 -32.24 7.74 25.60 0.20 -32.04 16 8 H 0.04 2.40 6.56 -2.91 -0.02 2.38 16 9 C -0.04 -2.24 5.46 84.65 0.46 -1.78 16 10 N -0.95 -59.56 13.65 21.45 0.29 -59.27 16 11 Si 1.12 53.20 29.90 68.60 2.05 55.26 16 12 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 13 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 14 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 15 C 0.06 2.04 4.76 86.30 0.41 2.45 16 16 C -0.09 -2.29 3.64 -10.27 -0.04 -2.33 16 17 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 18 C -0.12 -2.20 7.39 31.12 0.23 -1.97 16 19 C 0.15 2.82 4.24 45.51 0.19 3.01 16 20 H 0.11 2.38 7.46 -2.39 -0.02 2.36 16 21 N -0.69 -12.53 5.36 -567.61 -3.04 -15.58 16 22 C 0.64 14.58 8.06 129.79 1.05 15.62 16 23 O -0.59 -16.46 11.48 19.81 0.23 -16.24 16 24 O -0.37 -7.40 9.94 -55.47 -0.55 -7.95 16 25 C 0.12 1.99 1.13 -10.79 -0.01 1.98 16 26 C -0.18 -2.82 8.37 71.98 0.60 -2.22 16 27 C -0.14 -1.33 8.85 71.98 0.64 -0.69 16 28 C -0.18 -2.97 8.37 71.98 0.60 -2.37 16 29 C -0.14 -3.05 5.74 31.12 0.18 -2.87 16 30 H 0.07 2.47 8.14 -2.38 -0.02 2.45 16 31 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 34 H 0.05 1.58 5.83 -2.39 -0.01 1.56 16 35 H 0.06 2.54 6.35 -2.39 -0.02 2.53 16 36 H 0.10 3.09 5.50 -2.39 -0.01 3.07 16 37 H -0.02 -1.43 7.90 -2.39 -0.02 -1.45 16 38 H 0.00 0.21 5.38 -2.39 -0.01 0.20 16 39 H 0.25 16.04 7.22 -92.71 -0.67 15.37 16 40 H 0.05 1.87 7.90 -2.39 -0.02 1.85 16 41 H 0.04 1.11 5.41 -2.39 -0.01 1.10 16 42 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.10 1.53 8.08 -2.39 -0.02 1.51 16 44 H 0.42 5.69 8.84 -92.71 -0.82 4.87 16 45 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.06 1.34 5.88 -2.39 -0.01 1.33 16 48 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 49 H 0.10 0.56 8.14 -2.39 -0.02 0.55 16 50 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 51 H 0.06 1.38 5.88 -2.38 -0.01 1.37 16 52 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 53 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 54 H 0.09 1.79 7.89 -2.39 -0.02 1.78 16 55 H 0.07 1.57 7.52 -2.39 -0.02 1.55 16 Total: -1.00 -73.70 418.06 0.77 -72.93 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: 0.15 Total: 21.22 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: 6.93 Total: -6.40 kcal Atomic # 7 Polarization: -94.44 SS G_CDS: -6.99 Total: -101.43 kcal Atomic # 8 Polarization: -40.21 SS G_CDS: -1.37 Total: -41.57 kcal Atomic # 14 Polarization: 53.20 SS G_CDS: 2.05 Total: 55.26 kcal Total: -73.70 0.77 -72.93 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891938086.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.229 kcal (2) G-P(sol) polarization free energy of solvation -73.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds