Wall clock time and date at job start Wed Apr 1 2020 01:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42900 * 109.47026 * 2 1 4 4 C 1.42901 * 113.99785 * 184.32410 * 3 2 1 5 5 H 1.09001 * 109.47177 * 18.94508 * 4 3 2 6 6 C 1.53008 * 109.46678 * 138.94188 * 4 3 2 7 7 C 1.50698 * 109.46962 * 295.54885 * 6 4 3 8 8 O 1.21281 * 120.00163 * 4.53176 * 7 6 4 9 9 N 1.34777 * 119.99765 * 184.52358 * 7 6 4 10 10 C 1.46501 * 120.00151 * 185.18985 * 9 7 6 11 11 C 1.53008 * 109.54183 * 297.43312 * 10 9 7 12 12 N 1.46501 * 109.46970 * 304.21373 * 11 10 9 13 13 C 1.36934 * 120.00182 * 185.14211 * 12 11 10 14 14 H 1.08001 * 119.99874 * 354.93725 * 13 12 11 15 15 C 1.38812 * 120.00181 * 174.93755 * 13 12 11 16 16 N 1.31614 * 119.99909 * 5.10325 * 15 13 12 17 17 Si 1.86801 * 119.99880 * 185.10007 * 15 13 12 18 18 H 1.48496 * 109.47082 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46796 * 120.00023 * 17 15 13 20 20 H 1.48497 * 109.47348 * 240.00034 * 17 15 13 21 21 C 1.53173 * 109.54375 * 177.25354 * 10 9 7 22 22 C 1.53276 * 109.06408 * 297.02868 * 21 10 9 23 23 O 1.42909 * 109.46396 * 302.44598 * 22 21 10 24 24 C 1.42904 * 114.09443 * 61.15655 * 23 22 21 25 25 C 1.53099 * 109.41518 * 298.84422 * 24 23 22 26 26 C 1.53002 * 109.47322 * 258.93992 * 4 3 2 27 27 C 1.53000 * 109.46946 * 181.98970 * 26 4 3 28 28 C 1.52998 * 109.46951 * 61.98760 * 26 4 3 29 29 H 1.09004 * 109.46893 * 184.96525 * 1 2 3 30 30 H 1.08996 * 109.47647 * 304.96964 * 1 2 3 31 31 H 1.09006 * 109.46764 * 64.97065 * 1 2 3 32 32 H 1.09002 * 109.47587 * 239.99811 * 2 1 3 33 33 H 1.09004 * 109.46629 * 119.99702 * 2 1 3 34 34 H 1.08994 * 109.47320 * 55.55574 * 6 4 3 35 35 H 1.09004 * 109.46627 * 175.55095 * 6 4 3 36 36 H 0.97001 * 120.00147 * 5.19395 * 9 7 6 37 37 H 1.08992 * 109.47212 * 64.21383 * 11 10 9 38 38 H 1.09003 * 109.46799 * 184.21708 * 11 10 9 39 39 H 0.97002 * 119.99909 * 5.14067 * 12 11 10 40 40 H 0.97001 * 119.99672 * 174.99938 * 16 15 13 41 41 H 1.09002 * 109.52218 * 57.02200 * 21 10 9 42 42 H 1.09004 * 109.52215 * 177.20795 * 21 10 9 43 43 H 1.09003 * 109.46159 * 182.44877 * 22 21 10 44 44 H 1.09000 * 109.46857 * 62.45189 * 22 21 10 45 45 H 1.08996 * 109.48210 * 178.86128 * 24 23 22 46 46 H 1.08998 * 109.49146 * 58.83225 * 24 23 22 47 47 H 1.08997 * 109.51944 * 297.69989 * 25 24 23 48 48 H 1.08997 * 109.57191 * 177.54507 * 25 24 23 49 49 H 1.08996 * 109.46882 * 301.98937 * 26 4 3 50 50 H 1.08996 * 109.47303 * 299.99710 * 27 26 4 51 51 H 1.08998 * 109.47245 * 60.00167 * 27 26 4 52 52 H 1.09007 * 109.46821 * 180.02562 * 27 26 4 53 53 H 1.08998 * 109.46886 * 174.63127 * 28 26 4 54 54 H 1.08999 * 109.47390 * 294.63321 * 28 26 4 55 55 H 1.08998 * 109.47060 * 54.63280 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4273 1.4613 -0.0984 5 1 3.8406 0.5301 -0.4860 6 6 3.7824 2.6098 -1.0450 7 6 3.2997 2.2828 -2.4347 8 8 2.6565 1.2736 -2.6315 9 7 3.5827 3.1120 -3.4588 10 6 3.0191 2.8552 -4.7865 11 6 3.5342 1.5131 -5.3104 12 7 4.9992 1.5170 -5.3057 13 6 5.6884 0.4576 -5.8328 14 1 5.1549 -0.4160 -6.1773 15 6 7.0726 0.5064 -5.9243 16 7 7.7303 1.5258 -5.4139 17 14 8.0019 -0.8748 -6.7718 18 1 7.0381 -1.8949 -7.2570 19 1 8.7626 -0.3259 -7.9231 20 1 8.9438 -1.5010 -5.8096 21 6 3.4366 3.9742 -5.7456 22 6 2.8488 5.3012 -5.2528 23 8 1.4272 5.1876 -5.1615 24 6 0.9796 4.1878 -4.2438 25 6 1.4905 2.8171 -4.6955 26 6 4.0137 1.7422 1.2866 27 6 5.5298 1.9135 1.1734 28 6 3.7009 0.5709 2.2199 29 1 -0.3633 -1.0239 0.0890 30 1 -0.3634 0.5890 0.8421 31 1 -0.3633 0.4348 -0.9312 32 1 1.8934 -0.5139 -0.8900 33 1 1.8932 -0.5138 0.8901 34 1 3.3034 3.5262 -0.7002 35 1 4.8635 2.7480 -1.0590 36 1 4.1596 3.8788 -3.3169 37 1 3.1710 0.7095 -4.6700 38 1 3.1746 1.3580 -6.3276 39 1 5.4811 2.2700 -4.9292 40 1 8.7003 1.5257 -5.4131 41 1 4.5241 4.0430 -5.7735 42 1 3.0587 3.7574 -6.7447 43 1 3.1057 6.0949 -5.9544 44 1 3.2584 5.5376 -4.2708 45 1 -0.1101 4.1793 -4.2185 46 1 1.3645 4.4092 -3.2485 47 1 1.0732 2.5770 -5.6734 48 1 1.1873 2.0585 -3.9740 49 1 3.5739 2.6548 1.6890 50 1 5.9695 1.0010 0.7710 51 1 5.7526 2.7480 0.5085 52 1 5.9476 2.1132 2.1602 53 1 4.1986 0.7262 3.1771 54 1 2.6240 0.5082 2.3761 55 1 4.0575 -0.3563 1.7712 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273975828.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:45:38 Heat of formation + Delta-G solvation = -153.418394 kcal Electronic energy + Delta-G solvation = -33320.041703 eV Core-core repulsion = 29163.115245 eV Total energy + Delta-G solvation = -4156.926458 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 342.235 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.75051 -40.16465 -38.92344 -37.16203 -36.04050 -35.41849 -33.39874 -32.51822 -32.13915 -31.99754 -30.64498 -28.18703 -27.87156 -25.58913 -25.17051 -24.54175 -23.59832 -23.03052 -21.80569 -20.91961 -20.26792 -19.27205 -18.24554 -17.95563 -17.23384 -17.00896 -16.84542 -16.66455 -16.31016 -16.09879 -15.69080 -15.40921 -15.29442 -15.13402 -15.00006 -14.67286 -14.42140 -14.09432 -13.99165 -13.77342 -13.60978 -13.40300 -13.20896 -13.10171 -13.01021 -12.94429 -12.89174 -12.81794 -12.79499 -12.53429 -12.28868 -12.12133 -12.09312 -11.96120 -11.86209 -11.63343 -11.59544 -11.48556 -11.33556 -11.01241 -10.63802 -10.36018 -10.21807 -9.82154 -8.94644 -7.95896 -5.22813 1.43011 1.44258 1.53709 1.87272 2.28693 2.53443 2.81423 2.96647 3.34674 3.57695 3.72403 3.78301 3.81585 3.90233 4.01313 4.05412 4.17572 4.23889 4.25072 4.29331 4.31294 4.41389 4.48383 4.49411 4.56148 4.58900 4.68179 4.72602 4.76987 4.79761 4.80953 4.85768 4.87595 4.88172 4.95521 5.00371 5.04254 5.09208 5.11387 5.13638 5.17825 5.21924 5.22956 5.28805 5.40972 5.44309 5.46959 5.73100 6.25164 6.26532 6.39602 6.73233 7.33845 7.47987 8.07652 8.37532 9.26000 Molecular weight = 342.24amu Principal moments of inertia in cm(-1) A = 0.007582 B = 0.004517 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3691.919153 B = 6197.180585 C = 8310.205265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.061 3.939 3 O -0.381 6.381 4 C 0.115 3.885 5 H 0.038 0.962 6 C -0.143 4.143 7 C 0.515 3.485 8 O -0.558 6.558 9 N -0.711 5.711 10 C 0.183 3.817 11 C 0.148 3.852 12 N -0.726 5.726 13 C -0.244 4.244 14 H 0.060 0.940 15 C -0.064 4.064 16 N -0.960 5.960 17 Si 0.965 3.035 18 H -0.275 1.275 19 H -0.289 1.289 20 H -0.292 1.292 21 C -0.146 4.146 22 C 0.066 3.934 23 O -0.393 6.393 24 C 0.075 3.925 25 C -0.155 4.155 26 C -0.105 4.105 27 C -0.151 4.151 28 C -0.146 4.146 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.046 0.954 32 H 0.026 0.974 33 H 0.056 0.944 34 H 0.121 0.879 35 H 0.115 0.885 36 H 0.405 0.595 37 H 0.017 0.983 38 H 0.014 0.986 39 H 0.378 0.622 40 H 0.252 0.748 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.112 0.888 44 H 0.064 0.936 45 H 0.105 0.895 46 H 0.053 0.947 47 H 0.073 0.927 48 H 0.078 0.922 49 H 0.088 0.912 50 H 0.042 0.958 51 H 0.065 0.935 52 H 0.073 0.927 53 H 0.071 0.929 54 H 0.058 0.942 55 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.686 7.217 13.886 19.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.016 4.016 3 O -0.300 6.300 4 C 0.056 3.944 5 H 0.057 0.943 6 C -0.182 4.182 7 C 0.303 3.697 8 O -0.436 6.436 9 N -0.364 5.364 10 C 0.097 3.903 11 C 0.020 3.980 12 N -0.369 5.369 13 C -0.376 4.376 14 H 0.078 0.922 15 C -0.257 4.257 16 N -0.611 5.611 17 Si 0.794 3.206 18 H -0.200 1.200 19 H -0.216 1.216 20 H -0.219 1.219 21 C -0.185 4.185 22 C -0.010 4.010 23 O -0.312 6.312 24 C -0.002 4.002 25 C -0.194 4.194 26 C -0.124 4.124 27 C -0.208 4.208 28 C -0.204 4.204 29 H 0.101 0.899 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.044 0.956 33 H 0.074 0.926 34 H 0.139 0.861 35 H 0.133 0.867 36 H 0.241 0.759 37 H 0.035 0.965 38 H 0.032 0.968 39 H 0.211 0.789 40 H 0.061 0.939 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.130 0.870 44 H 0.082 0.918 45 H 0.123 0.877 46 H 0.071 0.929 47 H 0.092 0.908 48 H 0.096 0.904 49 H 0.106 0.894 50 H 0.061 0.939 51 H 0.084 0.916 52 H 0.092 0.908 53 H 0.090 0.910 54 H 0.077 0.923 55 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -12.416 6.639 13.493 19.501 hybrid contribution 1.684 -1.101 -0.552 2.086 sum -10.731 5.539 12.941 17.700 Atomic orbital electron populations 1.21680 0.93025 1.02853 1.02292 1.22533 0.96089 0.83701 0.99239 1.87783 1.20926 1.26885 1.94448 1.21792 0.81719 0.96672 0.94196 0.94337 1.22051 1.03948 1.01670 0.90543 1.20917 0.79032 0.82488 0.87256 1.90606 1.41158 1.26627 1.85222 1.45917 1.51643 1.30337 1.08476 1.20339 0.93004 0.94281 0.82708 1.21078 0.84458 0.96026 0.96438 1.42225 1.00517 1.21774 1.72415 1.19533 0.90148 0.96225 1.31672 0.92188 1.25365 0.97061 1.00452 1.02812 1.69756 1.06574 1.32326 1.52448 0.85204 0.78474 0.78910 0.77964 1.20032 1.21624 1.21932 1.22363 1.01953 0.95082 0.99078 1.22697 0.80445 0.96068 1.01795 1.87895 1.22208 1.56890 1.64226 1.22484 1.00078 0.85694 0.91948 1.22427 0.94070 0.99746 1.03163 1.21518 0.96326 1.00375 0.94149 1.21930 0.94162 1.01830 1.02889 1.21868 1.01777 0.97200 0.99507 0.89938 0.91288 0.93440 0.95574 0.92586 0.86056 0.86734 0.75865 0.96518 0.96776 0.78894 0.93930 0.90765 0.90556 0.86985 0.91763 0.87687 0.92855 0.90822 0.90353 0.89353 0.93879 0.91604 0.90760 0.91044 0.92310 0.93801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 10.28 71.98 0.74 -2.31 16 2 C 0.06 1.59 5.85 71.98 0.42 2.01 16 3 O -0.38 -10.53 8.83 -133.14 -1.18 -11.70 16 4 C 0.11 2.97 1.42 30.60 0.04 3.02 16 5 H 0.04 1.23 7.52 -2.39 -0.02 1.21 16 6 C -0.14 -3.50 5.14 29.85 0.15 -3.35 16 7 C 0.52 16.58 7.13 87.66 0.62 17.20 16 8 O -0.56 -21.90 11.03 12.81 0.14 -21.76 16 9 N -0.71 -21.16 3.60 -422.38 -1.52 -22.68 16 10 C 0.18 6.02 0.32 3.72 0.00 6.02 16 11 C 0.15 6.46 4.93 86.38 0.43 6.89 16 12 N -0.73 -37.09 5.16 -343.44 -1.77 -38.87 16 13 C -0.24 -14.03 9.98 84.03 0.84 -13.19 16 14 H 0.06 3.48 7.83 -2.91 -0.02 3.46 16 15 C -0.06 -3.68 5.50 84.86 0.47 -3.22 16 16 N -0.96 -57.16 13.06 21.65 0.28 -56.87 16 17 Si 0.96 46.83 29.56 68.60 2.03 48.86 16 18 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 19 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 20 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 21 C -0.15 -4.33 4.80 30.74 0.15 -4.18 16 22 C 0.07 1.53 6.67 72.07 0.48 2.01 16 23 O -0.39 -10.08 10.77 -148.98 -1.60 -11.69 16 24 C 0.07 1.82 6.68 72.02 0.48 2.31 16 25 C -0.16 -4.61 4.73 30.69 0.15 -4.47 16 26 C -0.10 -2.07 2.73 -10.79 -0.03 -2.10 16 27 C -0.15 -2.82 8.80 71.98 0.63 -2.18 16 28 C -0.15 -2.69 7.97 71.98 0.57 -2.12 16 29 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 30 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 32 H 0.03 0.83 7.60 -2.39 -0.02 0.82 16 33 H 0.06 1.27 6.02 -2.38 -0.01 1.25 16 34 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.11 2.60 6.15 -2.38 -0.01 2.59 16 36 H 0.41 10.16 7.62 -92.71 -0.71 9.45 16 37 H 0.02 0.83 6.32 -2.39 -0.02 0.82 16 38 H 0.01 0.64 8.14 -2.39 -0.02 0.63 16 39 H 0.38 19.53 6.63 -92.71 -0.61 18.91 16 40 H 0.25 14.50 8.32 -92.71 -0.77 13.72 16 41 H 0.07 2.46 7.35 -2.39 -0.02 2.44 16 42 H 0.08 2.36 8.14 -2.39 -0.02 2.35 16 43 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 44 H 0.06 1.27 7.15 -2.39 -0.02 1.26 16 45 H 0.11 2.22 8.14 -2.39 -0.02 2.21 16 46 H 0.05 1.26 7.75 -2.39 -0.02 1.24 16 47 H 0.07 2.18 8.14 -2.39 -0.02 2.17 16 48 H 0.08 2.65 6.11 -2.39 -0.01 2.63 16 49 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 50 H 0.04 0.93 8.14 -2.39 -0.02 0.92 16 51 H 0.07 1.17 6.29 -2.39 -0.02 1.15 16 52 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 53 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 54 H 0.06 1.09 6.66 -2.39 -0.02 1.07 16 55 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -70.03 415.58 2.08 -67.95 By element: Atomic # 1 Polarization: 44.87 SS G_CDS: -0.45 Total: 44.43 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: 6.15 Total: 2.33 kcal Atomic # 7 Polarization: -115.41 SS G_CDS: -3.01 Total: -118.42 kcal Atomic # 8 Polarization: -42.51 SS G_CDS: -2.64 Total: -45.15 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.86 kcal Total: -70.03 2.08 -67.95 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273975828.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.469 kcal (2) G-P(sol) polarization free energy of solvation -70.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds