Wall clock time and date at job start Wed Apr 1 2020 02:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86799 * 120.00065 * 2 1 4 4 H 1.48501 * 109.47237 * 240.00159 * 3 2 1 5 5 H 1.48503 * 109.47009 * 120.00132 * 3 2 1 6 6 H 1.48500 * 109.47258 * 0.02562 * 3 2 1 7 7 C 1.38811 * 119.99644 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00156 * 137.47928 * 7 2 1 9 9 N 1.36939 * 119.99993 * 317.46578 * 7 2 1 10 10 C 1.46877 * 125.36248 * 353.63608 * 9 7 2 11 11 C 1.54201 * 106.39285 * 197.80773 * 10 9 7 12 12 H 1.08996 * 109.64971 * 89.52793 * 11 10 9 13 13 O 1.40784 * 110.21976 * 210.34306 * 11 10 9 14 14 C 1.41325 * 118.39288 * 67.66041 * 13 11 10 15 15 C 1.51975 * 111.53209 * 56.96027 * 14 13 11 16 16 N 1.44956 * 111.88486 * 319.32817 * 15 14 13 17 17 C 1.34785 * 117.32110 * 203.66481 * 16 15 14 18 18 O 1.21622 * 119.99987 * 176.14271 * 17 16 15 19 19 C 1.47222 * 119.99868 * 356.14368 * 17 16 15 20 20 N 1.30601 * 125.53655 * 352.94679 * 19 17 16 21 21 C 1.30732 * 115.90315 * 179.77580 * 20 19 17 22 22 Cl 1.73598 * 122.12757 * 180.23682 * 21 20 19 23 23 C 1.34340 * 115.75412 * 0.52412 * 21 20 19 24 24 S 1.71069 * 109.09253 * 359.71801 * 23 21 20 25 25 C 1.44545 * 125.35863 * 23.66519 * 16 15 14 26 26 H 1.09000 * 109.48939 * 107.00466 * 25 16 15 27 27 C 1.46781 * 125.36242 * 173.32354 * 9 7 2 28 28 H 0.96998 * 120.00276 * 174.08827 * 1 2 3 29 29 H 1.08998 * 110.06999 * 317.04447 * 10 9 7 30 30 H 1.09005 * 110.06983 * 78.52407 * 10 9 7 31 31 H 1.09002 * 109.06776 * 177.48887 * 14 13 11 32 32 H 1.09001 * 109.06256 * 296.49878 * 14 13 11 33 33 H 1.09001 * 108.99998 * 79.95071 * 15 14 13 34 34 H 1.09000 * 108.99503 * 198.70911 * 15 14 13 35 35 H 1.08000 * 125.45558 * 179.72177 * 23 21 20 36 36 H 1.09001 * 109.82874 * 298.43189 * 27 9 7 37 37 H 1.08994 * 109.83223 * 59.40276 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 3.1040 1.6963 1.2125 6 1 1.2853 2.7465 0.0006 7 6 2.0102 -1.2022 -0.0005 8 1 2.8772 -1.3250 -0.6327 9 7 1.5957 -2.2324 0.8007 10 6 0.5209 -2.1537 1.7986 11 6 0.7120 -3.3598 2.7402 12 1 1.3678 -3.0807 3.5648 13 8 -0.5314 -3.7838 3.2464 14 6 -1.4603 -4.3602 2.3508 15 6 -0.8723 -5.5661 1.6368 16 7 0.5067 -5.3449 1.2487 17 6 0.9862 -6.0777 0.2241 18 8 2.1138 -5.8826 -0.1878 19 6 0.1449 -7.1144 -0.3964 20 7 -1.0239 -7.5036 0.0373 21 6 -1.6111 -8.4379 -0.6636 22 17 -3.1703 -9.0702 -0.2365 23 6 -0.9285 -8.8820 -1.7321 24 16 0.5547 -8.0364 -1.8396 25 6 1.4097 -4.4028 1.8702 26 1 2.1436 -4.9430 2.4683 27 6 2.1512 -3.5910 0.7930 28 1 -0.4850 -0.8355 -0.0865 29 1 0.6002 -1.2236 2.3613 30 1 -0.4505 -2.2118 1.3075 31 1 -2.3447 -4.6718 2.9066 32 1 -1.7499 -3.6151 1.6098 33 1 -0.9200 -6.4295 2.3004 34 1 -1.4633 -5.7731 0.7446 35 1 -1.2627 -9.6498 -2.4142 36 1 2.0003 -4.0467 -0.1856 37 1 3.2154 -3.5567 1.0261 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083174433.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:23:00 Heat of formation + Delta-G solvation = 35.262678 kcal Electronic energy + Delta-G solvation = -26266.351666 eV Core-core repulsion = 22392.310780 eV Total energy + Delta-G solvation = -3874.040886 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 343.054 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.25105 -39.98835 -38.51855 -36.90649 -36.09451 -35.05823 -32.67207 -30.93428 -30.06406 -28.14561 -27.92135 -26.32375 -24.46389 -23.37076 -22.41655 -21.06014 -19.87312 -19.21957 -18.40879 -17.74413 -17.25462 -16.89982 -16.22217 -16.10074 -15.36751 -15.22612 -14.83677 -14.54552 -14.37418 -13.88404 -13.75534 -13.60777 -13.17373 -12.67805 -12.59077 -12.49848 -12.17448 -11.99960 -11.71308 -11.40900 -11.08705 -10.99095 -10.77217 -10.70183 -10.42315 -10.27727 -10.14148 -9.97497 -9.93930 -9.59711 -9.20867 -9.14370 -8.47966 -8.19583 -6.96324 -6.23163 -3.00874 -0.22314 0.60963 0.88610 1.79881 1.84944 2.82720 2.91527 3.53525 3.59891 3.74040 3.76921 3.99731 4.45319 4.58098 4.62315 4.76799 4.94312 5.08019 5.11833 5.19228 5.32794 5.37246 5.58498 5.65229 5.74030 5.86243 5.94558 6.05227 6.34034 6.65270 6.81448 6.84093 6.88035 7.01600 7.16772 7.59990 7.81101 7.97337 8.48862 8.96652 9.82347 10.36612 11.10967 Molecular weight = 343.05amu Principal moments of inertia in cm(-1) A = 0.016354 B = 0.003522 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.752118 B = 7948.273280 C = 8522.848389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C -0.013 4.013 3 Si 1.042 2.958 4 H -0.293 1.293 5 H -0.294 1.294 6 H -0.287 1.287 7 C -0.355 4.355 8 H 0.071 0.929 9 N -0.597 5.597 10 C 0.119 3.881 11 C 0.084 3.916 12 H 0.120 0.880 13 O -0.369 6.369 14 C 0.055 3.945 15 C 0.077 3.923 16 N -0.558 5.558 17 C 0.584 3.416 18 O -0.507 6.507 19 C 0.002 3.998 20 N -0.419 5.419 21 C 0.105 3.895 22 Cl -0.007 7.007 23 C -0.279 4.279 24 S 0.304 5.696 25 C 0.108 3.892 26 H 0.081 0.919 27 C 0.123 3.877 28 H 0.266 0.734 29 H 0.054 0.946 30 H 0.028 0.972 31 H 0.108 0.892 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.106 0.894 35 H 0.194 0.806 36 H 0.062 0.938 37 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.437 -20.474 0.047 20.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.217 4.217 3 Si 0.871 3.129 4 H -0.220 1.220 5 H -0.221 1.221 6 H -0.213 1.213 7 C -0.481 4.481 8 H 0.089 0.911 9 N -0.325 5.325 10 C -0.007 4.007 11 C 0.025 3.975 12 H 0.138 0.862 13 O -0.286 6.286 14 C -0.022 4.022 15 C -0.046 4.046 16 N -0.291 5.291 17 C 0.368 3.632 18 O -0.383 6.383 19 C -0.273 4.273 20 N -0.139 5.139 21 C -0.059 4.059 22 Cl 0.021 6.979 23 C -0.421 4.421 24 S 0.559 5.441 25 C 0.004 3.996 26 H 0.099 0.901 27 C -0.002 4.002 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.045 0.955 31 H 0.125 0.875 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.123 0.877 35 H 0.211 0.789 36 H 0.079 0.921 37 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -3.494 -18.408 -0.098 18.737 hybrid contribution -1.064 -2.266 -0.182 2.510 sum -4.559 -20.673 -0.280 21.172 Atomic orbital electron populations 1.70833 1.07353 1.29797 1.44741 1.25563 0.95672 1.00734 0.99686 0.83857 0.75670 0.76895 0.76433 1.21970 1.22119 1.21280 1.19572 1.11678 0.91937 1.24956 0.91067 1.44395 1.39993 1.06886 1.41272 1.21808 0.92865 0.95686 0.90347 1.22700 0.84577 0.93026 0.97226 0.86206 1.86865 1.25712 1.79268 1.36730 1.22390 0.92047 0.93697 0.94092 1.22114 0.81557 0.98793 1.02128 1.46516 1.12841 1.37282 1.32440 1.16771 0.85496 0.80550 0.80429 1.90872 1.18266 1.66782 1.62346 1.27670 0.95355 1.04229 0.99996 1.66734 1.06811 1.11043 1.29295 1.20526 0.93009 0.97811 0.94569 1.98409 1.22117 1.83984 1.93401 1.26662 1.01509 1.09568 1.04375 1.84235 1.12228 1.25315 1.22322 1.21778 0.91261 0.90436 0.96105 0.90102 1.21839 0.95771 0.85134 0.97480 0.92340 0.92733 0.95495 0.87457 0.92492 0.90767 0.87669 0.78902 0.92090 0.94191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.82 12.93 55.49 0.72 -26.10 16 2 C -0.01 -0.37 4.83 -17.43 -0.08 -0.45 16 3 Si 1.04 25.41 30.06 -169.99 -5.11 20.30 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.36 -10.23 9.87 -15.06 -0.15 -10.37 16 8 H 0.07 2.08 8.06 -52.49 -0.42 1.66 16 9 N -0.60 -15.42 3.36 -171.41 -0.58 -16.00 16 10 C 0.12 2.80 5.16 -3.21 -0.02 2.78 16 11 C 0.08 1.56 3.92 -26.26 -0.10 1.46 16 12 H 0.12 2.04 8.14 -51.93 -0.42 1.62 16 13 O -0.37 -6.35 10.25 -34.36 -0.35 -6.70 16 14 C 0.05 0.82 6.74 36.64 0.25 1.07 16 15 C 0.08 1.11 5.11 -5.39 -0.03 1.09 16 16 N -0.56 -9.40 3.09 -170.33 -0.53 -9.92 16 17 C 0.58 9.76 7.04 -12.61 -0.09 9.67 16 18 O -0.51 -9.58 13.95 5.26 0.07 -9.50 16 19 C 0.00 0.03 7.03 -14.43 -0.10 -0.07 16 20 N -0.42 -5.31 6.94 -8.61 -0.06 -5.37 16 21 C 0.11 1.13 7.22 -19.40 -0.14 0.99 16 22 Cl -0.01 -0.07 29.20 -51.86 -1.51 -1.58 16 23 C -0.28 -2.37 10.93 29.36 0.32 -2.05 16 24 S 0.30 3.02 23.04 -107.50 -2.48 0.55 16 25 C 0.11 1.98 3.35 -68.66 -0.23 1.75 16 26 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 27 C 0.12 2.74 6.03 -3.41 -0.02 2.72 16 28 H 0.27 8.14 6.92 -40.82 -0.28 7.86 16 29 H 0.05 1.39 7.97 -51.93 -0.41 0.98 16 30 H 0.03 0.69 5.32 -51.93 -0.28 0.41 16 31 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.06 0.95 6.72 -51.93 -0.35 0.60 16 33 H 0.07 0.98 8.01 -51.93 -0.42 0.57 16 34 H 0.11 1.51 5.54 -51.93 -0.29 1.22 16 35 H 0.19 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.06 1.47 5.18 -51.93 -0.27 1.20 16 37 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 325.72 15.07 4.91 4.91 Total: -1.00 -32.64 325.72 -8.93 -41.58 By element: Atomic # 1 Polarization: 2.87 SS G_CDS: -3.63 Total: -0.75 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: -0.39 Total: 8.59 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: -0.44 Total: -57.39 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: -0.28 Total: -16.20 kcal Atomic # 14 Polarization: 25.41 SS G_CDS: -5.11 Total: 20.30 kcal Atomic # 16 Polarization: 3.02 SS G_CDS: -2.48 Total: 0.55 kcal Atomic # 17 Polarization: -0.07 SS G_CDS: -1.51 Total: -1.58 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.64 -8.93 -41.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083174433.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.838 kcal (2) G-P(sol) polarization free energy of solvation -32.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds