Wall clock time and date at job start Wed Apr 1 2020 01:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53001 * 109.46931 * 224.21171 * 3 2 1 5 5 H 1.09001 * 109.47144 * 305.00386 * 4 3 2 6 6 C 1.53000 * 109.46967 * 185.00377 * 4 3 2 7 7 O 1.42898 * 109.47180 * 304.99698 * 6 4 3 8 8 N 1.46499 * 109.46930 * 65.00489 * 4 3 2 9 9 S 1.65602 * 119.99859 * 214.67010 * 8 4 3 10 10 O 1.42103 * 106.40307 * 311.94988 * 9 8 4 11 11 O 1.42096 * 106.40393 * 179.03297 * 9 8 4 12 12 C 1.76195 * 107.22062 * 65.49004 * 9 8 4 13 13 C 1.38635 * 119.75852 * 245.29040 * 12 9 8 14 14 C 1.37603 * 120.26449 * 180.27493 * 13 12 9 15 15 C 1.40736 * 119.76985 * 359.97438 * 14 13 12 16 16 C 1.41403 * 120.23959 * 180.02562 * 15 14 13 17 17 H 1.07995 * 119.99982 * 150.07267 * 16 15 14 18 18 C 1.39945 * 119.99685 * 330.07608 * 16 15 14 19 19 N 1.30821 * 120.00054 * 164.71829 * 18 16 15 20 20 Si 1.86798 * 119.99880 * 344.71544 * 18 16 15 21 21 H 1.48503 * 109.47299 * 89.15273 * 20 18 16 22 22 H 1.48507 * 109.46852 * 209.14848 * 20 18 16 23 23 H 1.48500 * 109.47358 * 329.14949 * 20 18 16 24 24 C 1.40682 * 119.52902 * 0.02562 * 15 14 13 25 25 C 1.37759 * 119.72963 * 359.97438 * 24 15 14 26 26 Cl 1.73590 * 119.89172 * 179.97438 * 25 24 15 27 27 H 4.44647 * 5.63279 * 180.02562 * 4 1 2 28 28 H 1.08998 * 109.46662 * 104.21642 * 3 2 1 29 29 H 1.08993 * 109.47704 * 344.21297 * 3 2 1 30 30 H 1.09000 * 109.47184 * 64.99914 * 6 4 3 31 31 H 1.08998 * 109.47028 * 184.99969 * 6 4 3 32 32 H 0.96702 * 113.99831 * 179.97438 * 7 6 4 33 33 H 0.96996 * 120.00441 * 34.66904 * 8 4 3 34 34 H 1.07999 * 119.86939 * 0.25262 * 13 12 9 35 35 H 1.07995 * 120.11491 * 179.97438 * 14 13 12 36 36 H 0.97001 * 120.00573 * 179.97438 * 19 18 16 37 37 H 1.08002 * 120.13757 * 180.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1555 1.0348 1.0059 5 1 2.7204 2.0080 0.7784 6 6 4.6803 1.1246 0.9170 7 8 5.2454 -0.1750 1.1003 8 7 2.7682 0.6311 2.3598 9 16 2.3788 1.7802 3.4870 10 8 3.4092 2.7574 3.4363 11 8 2.0314 1.0780 4.6724 12 6 0.9089 2.5779 2.9323 13 6 0.9439 3.9190 2.5825 14 6 -0.1991 4.5538 2.1534 15 6 -1.4071 3.8367 2.0695 16 6 -2.5874 4.4790 1.6293 17 1 -3.3488 3.9141 1.1120 18 6 -2.7688 5.8467 1.8638 19 7 -3.6940 6.5047 1.2139 20 14 -1.6900 6.7326 3.1050 21 1 -0.4728 7.2454 2.4261 22 1 -2.4436 7.8684 3.6944 23 1 -1.2957 5.7884 4.1813 24 6 -1.4321 2.4762 2.4267 25 6 -0.2760 1.8607 2.8537 26 17 -0.3022 0.1823 3.2961 27 1 -1.0501 -0.0004 -0.0001 28 1 3.0091 0.2532 -0.9962 29 1 3.0099 -0.9880 0.2796 30 1 4.9651 1.5099 -0.0620 31 1 5.0507 1.7945 1.6929 32 1 6.2113 -0.1938 1.0559 33 1 2.7398 -0.3092 2.5962 34 1 1.8718 4.4678 2.6474 35 1 -0.1692 5.5986 1.8819 36 1 -3.8201 7.4526 1.3767 37 1 -2.3537 1.9164 2.3657 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663018753.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:51:10 Heat of formation + Delta-G solvation = -65.417803 kcal Electronic energy + Delta-G solvation = -26074.257846 eV Core-core repulsion = 22163.558375 eV Total energy + Delta-G solvation = -3910.699471 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 343.048 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -38.18090 -38.04242 -36.59490 -35.82188 -35.31098 -35.22302 -34.05598 -32.69623 -31.00214 -29.90037 -29.51701 -26.57364 -25.96033 -22.10905 -21.49346 -21.39169 -19.24069 -18.21532 -17.96460 -17.60213 -17.14461 -16.66029 -16.00287 -15.64370 -14.89997 -14.67035 -14.63326 -14.24753 -13.98909 -13.57111 -13.31977 -13.24767 -13.07305 -12.96729 -12.69195 -12.07092 -11.85779 -11.76490 -11.50846 -11.47918 -11.33442 -11.25719 -11.00751 -10.99753 -10.59383 -10.42981 -10.23425 -10.05842 -9.93951 -9.77809 -9.72823 -9.51147 -9.14493 -8.33340 -7.92842 -7.45441 -5.08085 1.10117 1.80722 2.29915 2.76854 2.84120 2.97791 3.04838 3.16399 3.22351 3.53163 3.64170 3.95520 4.19275 4.36678 4.59697 4.88085 4.99133 5.06524 5.21410 5.27255 5.36572 5.52686 5.69182 5.74360 5.89907 6.07367 6.21233 6.31432 6.34157 6.39195 6.61771 6.83763 6.93956 7.01310 7.31260 7.38900 7.53917 7.55401 7.82342 8.01737 8.11812 8.24678 9.52627 Molecular weight = 343.05amu Principal moments of inertia in cm(-1) A = 0.014648 B = 0.004595 C = 0.004389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.082396 B = 6092.513060 C = 6378.521378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.200 4.200 3 C -0.004 4.004 4 C 0.167 3.833 5 H 0.102 0.898 6 C 0.056 3.944 7 O -0.568 6.568 8 N -1.106 6.106 9 S 2.696 3.304 10 O -0.985 6.985 11 O -0.967 6.967 12 C -0.797 4.797 13 C 0.022 3.978 14 C -0.258 4.258 15 C 0.122 3.878 16 C -0.403 4.403 17 H 0.102 0.898 18 C 0.080 3.920 19 N -0.773 5.773 20 Si 0.917 3.083 21 H -0.260 1.260 22 H -0.284 1.284 23 H -0.240 1.240 24 C -0.208 4.208 25 C 0.104 3.896 26 Cl -0.091 7.091 27 H 0.210 0.790 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.376 0.624 33 H 0.415 0.585 34 H 0.121 0.879 35 H 0.114 0.886 36 H 0.296 0.704 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.639 -6.989 -3.284 13.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.200 4.200 3 C -0.042 4.042 4 C 0.059 3.941 5 H 0.120 0.880 6 C -0.023 4.023 7 O -0.373 6.373 8 N -0.862 5.862 9 S 2.792 3.208 10 O -0.975 6.975 11 O -0.958 6.958 12 C -0.891 4.891 13 C 0.002 3.998 14 C -0.278 4.278 15 C 0.117 3.883 16 C -0.429 4.429 17 H 0.120 0.880 18 C -0.145 4.145 19 N -0.394 5.394 20 Si 0.743 3.257 21 H -0.186 1.186 22 H -0.211 1.211 23 H -0.163 1.163 24 C -0.229 4.229 25 C 0.076 3.924 26 Cl -0.062 7.062 27 H 0.227 0.773 28 H 0.109 0.891 29 H 0.114 0.886 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.223 0.777 33 H 0.249 0.751 34 H 0.139 0.861 35 H 0.131 0.869 36 H 0.107 0.893 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 10.294 -6.724 -2.562 12.559 hybrid contribution -0.096 0.385 -0.071 0.403 sum 10.198 -6.339 -2.633 12.293 Atomic orbital electron populations 1.24781 0.95806 0.99581 0.99661 1.22695 0.94123 1.01659 1.01534 1.18800 0.85331 1.00812 0.99289 1.20726 0.92182 0.98988 0.82180 0.88041 1.22841 0.93823 0.85122 1.00538 1.86457 1.25070 1.29648 1.96089 1.55570 1.84685 1.21982 1.23995 1.01306 0.74013 0.72627 0.72902 1.93476 1.56321 1.60832 1.86871 1.93559 1.84850 1.73343 1.44016 1.29196 1.15875 1.06120 1.37919 1.20229 0.97932 0.91231 0.90413 1.21231 0.93269 1.00341 1.12914 1.17754 0.92594 0.91313 0.86639 1.19862 1.02306 0.93363 1.27346 0.88014 1.26391 0.95050 0.97440 0.95592 1.69632 1.26818 1.11208 1.31721 0.86236 0.79050 0.78999 0.81458 1.18615 1.21138 1.16325 1.20895 0.95895 0.96076 1.10008 1.19952 0.94275 0.82577 0.95640 1.98341 1.98665 1.17813 1.91392 0.77269 0.89077 0.88584 0.92662 0.91628 0.77724 0.75056 0.86138 0.86857 0.89297 0.86518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.70 18.52 29.55 0.55 -2.15 16 2 C -0.20 -2.87 13.06 -37.12 -0.48 -3.35 16 3 C 0.00 -0.05 5.03 -29.52 -0.15 -0.20 16 4 C 0.17 2.14 2.54 -67.93 -0.17 1.97 16 5 H 0.10 1.37 7.88 -51.93 -0.41 0.96 16 6 C 0.06 0.59 6.88 37.16 0.26 0.85 16 7 O -0.57 -5.48 12.83 -35.23 -0.45 -5.93 16 8 N -1.11 -16.36 4.92 -4.89 -0.02 -16.39 16 9 S 2.70 50.33 4.97 -107.50 -0.53 49.80 16 10 O -0.98 -19.37 16.11 -57.17 -0.92 -20.29 16 11 O -0.97 -20.32 16.43 -57.17 -0.94 -21.26 16 12 C -0.80 -16.37 5.80 -39.25 -0.23 -16.60 16 13 C 0.02 0.46 9.52 -39.67 -0.38 0.08 16 14 C -0.26 -5.71 7.21 -38.87 -0.28 -5.99 16 15 C 0.12 2.79 5.13 -106.83 -0.55 2.24 16 16 C -0.40 -9.60 9.59 -37.74 -0.36 -9.96 16 17 H 0.10 2.49 8.06 -52.49 -0.42 2.07 16 18 C 0.08 1.84 5.44 -17.34 -0.09 1.75 16 19 N -0.77 -18.09 13.93 55.55 0.77 -17.31 16 20 Si 0.92 18.86 24.48 -169.99 -4.16 14.70 16 21 H -0.26 -5.14 6.43 56.52 0.36 -4.77 16 22 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 23 H -0.24 -5.19 6.98 56.52 0.39 -4.80 16 24 C -0.21 -4.49 9.57 -38.83 -0.37 -4.86 16 25 C 0.10 2.14 6.29 -39.57 -0.25 1.89 16 26 Cl -0.09 -1.68 25.68 -51.86 -1.33 -3.01 16 27 H 0.21 2.84 7.80 -54.08 -0.42 2.41 16 28 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.10 1.06 7.73 -51.93 -0.40 0.66 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.78 7.55 -51.93 -0.39 0.39 16 32 H 0.38 2.01 9.12 45.56 0.42 2.43 16 33 H 0.42 5.70 8.83 -34.47 -0.30 5.39 16 34 H 0.12 2.29 7.31 -52.49 -0.38 1.90 16 35 H 0.11 2.44 4.35 -52.49 -0.23 2.21 16 36 H 0.30 6.21 8.30 -40.82 -0.34 5.87 16 37 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 LS Contribution 345.71 15.07 5.21 5.21 Total: -1.00 -28.99 345.71 -7.89 -36.88 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -3.00 Total: 11.93 kcal Atomic # 6 Polarization: -31.81 SS G_CDS: -2.51 Total: -34.32 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: 0.75 Total: -33.70 kcal Atomic # 8 Polarization: -45.17 SS G_CDS: -2.31 Total: -47.49 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -4.16 Total: 14.70 kcal Atomic # 16 Polarization: 50.33 SS G_CDS: -0.53 Total: 49.80 kcal Atomic # 17 Polarization: -1.68 SS G_CDS: -1.33 Total: -3.01 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -28.99 -7.89 -36.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663018753.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.533 kcal (2) G-P(sol) polarization free energy of solvation -28.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds