Wall clock time and date at job start Wed Apr 1 2020 01:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 C 1.52992 * 109.47426 * 44.10207 * 3 2 1 5 5 H 1.09004 * 109.47261 * 55.00038 * 4 3 2 6 6 C 1.52998 * 109.47494 * 174.99826 * 4 3 2 7 7 O 1.42901 * 109.46806 * 54.99660 * 6 4 3 8 8 N 1.46504 * 109.47102 * 294.99956 * 4 3 2 9 9 S 1.65600 * 119.99971 * 142.95907 * 8 4 3 10 10 O 1.42100 * 106.40234 * 310.61660 * 9 8 4 11 11 O 1.42103 * 106.39898 * 177.69639 * 9 8 4 12 12 C 1.76195 * 107.22040 * 64.15717 * 9 8 4 13 13 C 1.38637 * 119.75850 * 243.15690 * 12 9 8 14 14 C 1.37602 * 120.26292 * 179.75953 * 13 12 9 15 15 C 1.40740 * 119.77111 * 0.51568 * 14 13 12 16 16 C 1.41396 * 120.23649 * 179.76685 * 15 14 13 17 17 H 1.08004 * 120.00145 * 27.05467 * 16 15 14 18 18 C 1.39947 * 120.00022 * 207.06143 * 16 15 14 19 19 N 1.30825 * 119.99827 * 13.67308 * 18 16 15 20 20 Si 1.86795 * 119.99993 * 193.67911 * 18 16 15 21 21 H 1.48496 * 109.47657 * 59.99428 * 20 18 16 22 22 H 1.48506 * 109.47068 * 179.97438 * 20 18 16 23 23 H 1.48510 * 109.46911 * 299.99405 * 20 18 16 24 24 C 1.40676 * 119.52421 * 359.73994 * 15 14 13 25 25 C 1.37750 * 119.73460 * 359.97438 * 24 15 14 26 26 Cl 1.73604 * 119.89215 * 179.97438 * 25 24 15 27 27 H 4.44651 * 5.63256 * 180.02562 * 4 1 2 28 28 H 1.08998 * 109.47025 * 284.09800 * 3 2 1 29 29 H 1.08998 * 109.46694 * 164.10045 * 3 2 1 30 30 H 1.08994 * 109.47524 * 174.99818 * 6 4 3 31 31 H 1.09004 * 109.46810 * 295.00345 * 6 4 3 32 32 H 0.96703 * 114.00082 * 179.97438 * 7 6 4 33 33 H 0.97001 * 120.00108 * 322.95459 * 8 4 3 34 34 H 1.08001 * 119.86145 * 359.97438 * 13 12 9 35 35 H 1.08001 * 120.11098 * 180.22897 * 14 13 12 36 36 H 0.97002 * 119.99784 * 180.02562 * 19 18 16 37 37 H 1.08001 * 120.12989 * 180.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.0349 -1.0038 5 1 2.7219 -0.8364 -1.9835 6 6 4.6813 -0.9480 -1.0954 7 8 5.2458 -1.0926 0.2094 8 7 2.7696 -2.3766 -0.5607 9 16 2.3248 -3.5198 -1.6732 10 8 1.3654 -2.9030 -2.5207 11 8 2.0650 -4.7107 -0.9427 12 6 3.7358 -3.8489 -2.6757 13 6 3.6986 -3.5621 -4.0316 14 6 4.7964 -3.8103 -4.8233 15 6 5.9567 -4.3677 -4.2543 16 6 7.0886 -4.6313 -5.0597 17 1 7.2629 -4.0501 -5.9531 18 6 7.9830 -5.6455 -4.6991 19 7 7.6471 -6.5194 -3.7853 20 14 9.6564 -5.7512 -5.5224 21 1 10.4129 -4.4988 -5.2689 22 1 10.4092 -6.9047 -4.9673 23 1 9.4776 -5.9340 -6.9853 24 6 5.9824 -4.6601 -2.8785 25 6 4.8742 -4.3980 -2.1035 26 17 4.9013 -4.7578 -0.4054 27 1 -1.0498 -0.0001 -0.0003 28 1 3.0095 -0.2495 0.9967 29 1 3.0088 0.9892 -0.2815 30 1 5.0524 -1.7431 -1.7420 31 1 4.9659 0.0195 -1.5092 32 1 6.2117 -1.0480 0.2272 33 1 2.7741 -2.5954 0.3843 34 1 2.8056 -3.1389 -4.4674 35 1 4.7660 -3.5824 -5.8786 36 1 8.2672 -7.2221 -3.5351 37 1 6.8678 -5.0876 -2.4316 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663018754.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:51:12 Heat of formation + Delta-G solvation = -70.065498 kcal Electronic energy + Delta-G solvation = -25925.942530 eV Core-core repulsion = 22015.041520 eV Total energy + Delta-G solvation = -3910.901010 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 343.048 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -38.06103 -37.78213 -36.45704 -35.59069 -35.16789 -35.07228 -34.11325 -32.82551 -30.34981 -29.59300 -29.43632 -26.54573 -26.00075 -21.82938 -21.49399 -21.19666 -19.11998 -18.24367 -17.85138 -17.45052 -16.79427 -16.56329 -15.95709 -15.56263 -14.83609 -14.55863 -14.49314 -14.09279 -13.73537 -13.54552 -13.35369 -13.21964 -12.75570 -12.58847 -12.32507 -12.01563 -11.69902 -11.65422 -11.51384 -11.35860 -11.26025 -11.24157 -11.15131 -10.64121 -10.49611 -10.35224 -10.25176 -10.10488 -10.03627 -9.75486 -9.70970 -9.58047 -9.04500 -8.11152 -7.74260 -7.24434 -4.98530 1.23822 2.01304 2.60987 2.80576 2.82914 2.84990 2.93939 2.97794 3.02330 3.56194 3.66586 4.08742 4.37040 4.43731 4.52150 5.01291 5.07645 5.21711 5.26096 5.42131 5.49459 5.56248 5.87513 5.90561 5.96165 6.15292 6.29067 6.40290 6.54344 6.65361 6.78007 6.96571 7.13774 7.29802 7.41515 7.54458 7.73635 7.75702 7.77901 8.05442 8.31647 8.37357 9.65249 Molecular weight = 343.05amu Principal moments of inertia in cm(-1) A = 0.017527 B = 0.003942 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.129145 B = 7100.750011 C = 7279.419138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.181 4.181 3 C -0.010 4.010 4 C 0.167 3.833 5 H 0.104 0.896 6 C 0.054 3.946 7 O -0.563 6.563 8 N -1.106 6.106 9 S 2.695 3.305 10 O -0.985 6.985 11 O -0.969 6.969 12 C -0.793 4.793 13 C 0.008 3.992 14 C -0.235 4.235 15 C 0.144 3.856 16 C -0.427 4.427 17 H 0.091 0.909 18 C 0.069 3.931 19 N -0.762 5.762 20 Si 0.921 3.079 21 H -0.259 1.259 22 H -0.273 1.273 23 H -0.260 1.260 24 C -0.168 4.168 25 C 0.078 3.922 26 Cl -0.096 7.096 27 H 0.214 0.786 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.068 0.932 31 H 0.052 0.948 32 H 0.377 0.623 33 H 0.415 0.585 34 H 0.116 0.884 35 H 0.106 0.894 36 H 0.293 0.707 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.756 9.631 4.464 10.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.181 4.181 3 C -0.048 4.048 4 C 0.059 3.941 5 H 0.122 0.878 6 C -0.025 4.025 7 O -0.368 6.368 8 N -0.863 5.863 9 S 2.791 3.209 10 O -0.976 6.976 11 O -0.960 6.960 12 C -0.888 4.888 13 C -0.012 4.012 14 C -0.256 4.256 15 C 0.140 3.860 16 C -0.454 4.454 17 H 0.109 0.891 18 C -0.154 4.154 19 N -0.383 5.383 20 Si 0.744 3.256 21 H -0.183 1.183 22 H -0.198 1.198 23 H -0.184 1.184 24 C -0.189 4.189 25 C 0.050 3.950 26 Cl -0.067 7.067 27 H 0.231 0.769 28 H 0.118 0.882 29 H 0.113 0.887 30 H 0.086 0.914 31 H 0.070 0.930 32 H 0.224 0.776 33 H 0.249 0.751 34 H 0.134 0.866 35 H 0.124 0.876 36 H 0.104 0.896 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.163 8.979 4.665 10.347 hybrid contribution 1.914 -0.300 -0.279 1.958 sum -0.249 8.679 4.386 9.727 Atomic orbital electron populations 1.24822 0.95937 1.01171 1.01004 1.23030 0.94473 1.00159 1.00426 1.18917 0.84728 0.99495 1.01663 1.20731 0.92576 0.82230 0.98591 0.87819 1.22816 0.93498 1.00709 0.85514 1.86407 1.25155 1.96671 1.28593 1.55561 1.86088 1.23155 1.21493 1.01277 0.74197 0.72542 0.72882 1.93479 1.58991 1.77364 1.67722 1.93553 1.85028 1.45128 1.72263 1.29139 1.18828 1.32563 1.08231 1.20205 0.97321 0.93028 0.90687 1.21104 0.93954 1.12034 0.98489 1.17724 0.91271 0.86023 0.91020 1.19935 1.04221 1.13301 1.07961 0.89053 1.26181 1.00675 0.94175 0.94409 1.69778 1.36091 1.09466 1.23012 0.86118 0.79821 0.79259 0.80364 1.18304 1.19776 1.18449 1.21301 0.97520 1.06758 0.93328 1.20038 0.94865 0.97520 0.82619 1.98330 1.98510 1.93603 1.16264 0.76931 0.88162 0.88715 0.91379 0.93028 0.77647 0.75116 0.86569 0.87568 0.89555 0.84845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.73 19.25 29.55 0.57 -2.16 16 2 C -0.18 -2.43 13.06 -37.12 -0.48 -2.92 16 3 C -0.01 -0.12 5.04 -29.52 -0.15 -0.26 16 4 C 0.17 2.26 2.67 -67.93 -0.18 2.08 16 5 H 0.10 1.44 7.52 -51.93 -0.39 1.05 16 6 C 0.05 0.68 6.88 37.16 0.26 0.93 16 7 O -0.56 -6.62 12.83 -35.23 -0.45 -7.08 16 8 N -1.11 -17.52 4.75 -4.89 -0.02 -17.54 16 9 S 2.70 53.57 5.00 -107.50 -0.54 53.03 16 10 O -0.99 -20.94 16.33 -57.17 -0.93 -21.88 16 11 O -0.97 -21.83 16.59 -57.17 -0.95 -22.77 16 12 C -0.79 -16.87 5.01 -39.25 -0.20 -17.06 16 13 C 0.01 0.16 9.52 -39.67 -0.38 -0.21 16 14 C -0.24 -5.13 9.79 -38.87 -0.38 -5.51 16 15 C 0.14 3.37 5.56 -106.83 -0.59 2.78 16 16 C -0.43 -9.71 9.06 -37.74 -0.34 -10.05 16 17 H 0.09 1.93 7.88 -52.48 -0.41 1.52 16 18 C 0.07 1.49 5.21 -17.34 -0.09 1.40 16 19 N -0.76 -17.43 10.89 55.55 0.60 -16.83 16 20 Si 0.92 16.05 29.58 -169.99 -5.03 11.02 16 21 H -0.26 -4.44 7.11 56.52 0.40 -4.04 16 22 H -0.27 -4.69 7.11 56.52 0.40 -4.29 16 23 H -0.26 -4.50 7.11 56.52 0.40 -4.10 16 24 C -0.17 -3.94 8.45 -38.84 -0.33 -4.27 16 25 C 0.08 1.71 5.57 -39.57 -0.22 1.49 16 26 Cl -0.10 -1.92 26.39 -51.86 -1.37 -3.29 16 27 H 0.21 2.03 7.80 -54.10 -0.42 1.61 16 28 H 0.10 1.12 7.73 -51.93 -0.40 0.72 16 29 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.07 1.03 6.44 -51.93 -0.33 0.70 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.38 3.25 9.12 45.56 0.42 3.67 16 33 H 0.41 6.13 8.86 -34.47 -0.31 5.82 16 34 H 0.12 2.25 7.31 -52.49 -0.38 1.86 16 35 H 0.11 2.11 8.06 -52.49 -0.42 1.69 16 36 H 0.29 6.07 8.30 -40.82 -0.34 5.73 16 37 H 0.13 3.22 6.20 -52.49 -0.33 2.89 16 LS Contribution 350.23 15.07 5.28 5.28 Total: -1.00 -29.57 350.23 -8.89 -38.46 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: -2.96 Total: 15.36 kcal Atomic # 6 Polarization: -31.25 SS G_CDS: -2.52 Total: -33.77 kcal Atomic # 7 Polarization: -34.95 SS G_CDS: 0.58 Total: -34.37 kcal Atomic # 8 Polarization: -49.39 SS G_CDS: -2.33 Total: -51.73 kcal Atomic # 14 Polarization: 16.05 SS G_CDS: -5.03 Total: 11.02 kcal Atomic # 16 Polarization: 53.57 SS G_CDS: -0.54 Total: 53.03 kcal Atomic # 17 Polarization: -1.92 SS G_CDS: -1.37 Total: -3.29 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.57 -8.89 -38.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663018754.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.607 kcal (2) G-P(sol) polarization free energy of solvation -29.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds