Wall clock time and date at job start Wed Apr 1 2020 01:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 C 1.52992 * 109.47426 * 44.10207 * 3 2 1 5 5 H 1.09004 * 109.47261 * 55.00038 * 4 3 2 6 6 C 1.52998 * 109.47494 * 174.99826 * 4 3 2 7 7 O 1.42901 * 109.46806 * 54.99660 * 6 4 3 8 8 N 1.46504 * 109.47102 * 294.99956 * 4 3 2 9 9 S 1.65600 * 119.99971 * 142.95907 * 8 4 3 10 10 O 1.42100 * 106.40234 * 310.61660 * 9 8 4 11 11 O 1.42103 * 106.39898 * 177.69639 * 9 8 4 12 12 C 1.76195 * 107.22040 * 64.15717 * 9 8 4 13 13 C 1.38637 * 119.75850 * 243.15690 * 12 9 8 14 14 C 1.37602 * 120.26292 * 179.75953 * 13 12 9 15 15 C 1.40740 * 119.77111 * 0.51568 * 14 13 12 16 16 C 1.41396 * 120.23649 * 179.76685 * 15 14 13 17 17 H 1.08004 * 120.00145 * 27.05467 * 16 15 14 18 18 C 1.39947 * 120.00022 * 207.06143 * 16 15 14 19 19 N 1.30825 * 119.99827 * 13.67308 * 18 16 15 20 20 Si 1.86795 * 119.99993 * 193.67911 * 18 16 15 21 21 H 1.48496 * 109.47657 * 59.99428 * 20 18 16 22 22 H 1.48506 * 109.47068 * 179.97438 * 20 18 16 23 23 H 1.48510 * 109.46911 * 299.99405 * 20 18 16 24 24 C 1.40676 * 119.52421 * 359.73994 * 15 14 13 25 25 C 1.37750 * 119.73460 * 359.97438 * 24 15 14 26 26 Cl 1.73604 * 119.89215 * 179.97438 * 25 24 15 27 27 H 4.44651 * 5.63256 * 180.02562 * 4 1 2 28 28 H 1.08998 * 109.47025 * 284.09800 * 3 2 1 29 29 H 1.08998 * 109.46694 * 164.10045 * 3 2 1 30 30 H 1.08994 * 109.47524 * 174.99818 * 6 4 3 31 31 H 1.09004 * 109.46810 * 295.00345 * 6 4 3 32 32 H 0.96703 * 114.00082 * 179.97438 * 7 6 4 33 33 H 0.97001 * 120.00108 * 322.95459 * 8 4 3 34 34 H 1.08001 * 119.86145 * 359.97438 * 13 12 9 35 35 H 1.08001 * 120.11098 * 180.22897 * 14 13 12 36 36 H 0.97002 * 119.99784 * 180.02562 * 19 18 16 37 37 H 1.08001 * 120.12989 * 180.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.0349 -1.0038 5 1 2.7219 -0.8364 -1.9835 6 6 4.6813 -0.9480 -1.0954 7 8 5.2458 -1.0926 0.2094 8 7 2.7696 -2.3766 -0.5607 9 16 2.3248 -3.5198 -1.6732 10 8 1.3654 -2.9030 -2.5207 11 8 2.0650 -4.7107 -0.9427 12 6 3.7358 -3.8489 -2.6757 13 6 3.6986 -3.5621 -4.0316 14 6 4.7964 -3.8103 -4.8233 15 6 5.9567 -4.3677 -4.2543 16 6 7.0886 -4.6313 -5.0597 17 1 7.2629 -4.0501 -5.9531 18 6 7.9830 -5.6455 -4.6991 19 7 7.6471 -6.5194 -3.7853 20 14 9.6564 -5.7512 -5.5224 21 1 10.4129 -4.4988 -5.2689 22 1 10.4092 -6.9047 -4.9673 23 1 9.4776 -5.9340 -6.9853 24 6 5.9824 -4.6601 -2.8785 25 6 4.8742 -4.3980 -2.1035 26 17 4.9013 -4.7578 -0.4054 27 1 -1.0498 -0.0001 -0.0003 28 1 3.0095 -0.2495 0.9967 29 1 3.0088 0.9892 -0.2815 30 1 5.0524 -1.7431 -1.7420 31 1 4.9659 0.0195 -1.5092 32 1 6.2117 -1.0480 0.2272 33 1 2.7741 -2.5954 0.3843 34 1 2.8056 -3.1389 -4.4674 35 1 4.7660 -3.5824 -5.8786 36 1 8.2672 -7.2221 -3.5351 37 1 6.8678 -5.0876 -2.4316 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663018754.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:51:11 Heat of formation + Delta-G solvation = -91.108372 kcal Electronic energy + Delta-G solvation = -25926.855017 eV Core-core repulsion = 22015.041520 eV Total energy + Delta-G solvation = -3911.813497 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 343.048 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.62767 -38.96953 -38.11576 -37.26338 -36.78080 -36.15043 -35.77681 -33.89817 -32.05183 -31.21382 -30.63692 -27.79879 -27.41011 -23.50903 -23.07900 -22.42194 -20.56258 -19.54385 -19.33347 -18.77857 -18.18378 -17.90060 -17.38147 -17.01313 -16.29838 -16.08451 -15.61155 -15.44677 -15.10742 -15.01086 -14.63650 -14.44106 -14.19745 -14.11349 -13.95030 -13.32411 -13.21720 -13.05344 -12.99994 -12.92828 -12.72581 -12.67337 -12.57908 -12.24775 -12.03645 -11.99356 -11.80039 -11.39886 -11.24110 -11.16991 -10.99305 -10.69124 -10.32582 -9.82838 -9.45511 -8.87711 -6.71785 -0.33912 0.32105 0.87676 1.31050 1.38275 1.45033 1.52169 1.94270 1.99578 2.10834 2.19642 2.47144 2.88623 3.37639 3.45993 3.54098 3.66741 3.99598 4.20823 4.23152 4.41986 4.45590 4.67598 4.71107 4.85539 4.88643 4.94801 4.98781 5.08691 5.22064 5.25795 5.31532 5.42693 5.56981 5.82738 6.02897 6.17015 6.34466 6.60806 6.65902 6.79746 6.99044 8.05060 Molecular weight = 343.05amu Principal moments of inertia in cm(-1) A = 0.017527 B = 0.003942 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.129145 B = 7100.750011 C = 7279.419138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.207 4.207 3 C -0.003 4.003 4 C 0.159 3.841 5 H 0.100 0.900 6 C 0.060 3.940 7 O -0.570 6.570 8 N -1.095 6.095 9 S 2.713 3.287 10 O -0.999 6.999 11 O -0.998 6.998 12 C -0.799 4.799 13 C 0.004 3.996 14 C -0.244 4.244 15 C 0.120 3.880 16 C -0.451 4.451 17 H 0.101 0.899 18 C 0.033 3.967 19 N -0.796 5.796 20 Si 0.993 3.007 21 H -0.253 1.253 22 H -0.269 1.269 23 H -0.255 1.255 24 C -0.187 4.187 25 C 0.076 3.924 26 Cl -0.083 7.083 27 H 0.236 0.764 28 H 0.106 0.894 29 H 0.123 0.877 30 H 0.039 0.961 31 H 0.082 0.918 32 H 0.391 0.609 33 H 0.421 0.579 34 H 0.133 0.867 35 H 0.122 0.878 36 H 0.299 0.701 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.178 10.931 4.443 11.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.207 4.207 3 C -0.041 4.041 4 C 0.052 3.948 5 H 0.117 0.883 6 C -0.020 4.020 7 O -0.377 6.377 8 N -0.855 5.855 9 S 2.808 3.192 10 O -0.989 6.989 11 O -0.989 6.989 12 C -0.892 4.892 13 C -0.016 4.016 14 C -0.265 4.265 15 C 0.116 3.884 16 C -0.478 4.478 17 H 0.119 0.881 18 C -0.187 4.187 19 N -0.419 5.419 20 Si 0.812 3.188 21 H -0.177 1.177 22 H -0.194 1.194 23 H -0.179 1.179 24 C -0.208 4.208 25 C 0.048 3.952 26 Cl -0.054 7.054 27 H 0.253 0.747 28 H 0.124 0.876 29 H 0.141 0.859 30 H 0.057 0.943 31 H 0.100 0.900 32 H 0.240 0.760 33 H 0.257 0.743 34 H 0.150 0.850 35 H 0.140 0.860 36 H 0.111 0.889 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.578 10.281 4.643 11.391 hybrid contribution 1.654 -0.653 -0.190 1.788 sum 0.076 9.629 4.454 10.609 Atomic orbital electron populations 1.25613 0.97035 1.00704 1.00465 1.23602 0.95464 1.00690 1.00981 1.18954 0.83829 1.00063 1.01266 1.20993 0.93493 0.81255 0.99093 0.88259 1.22689 0.92604 1.01258 0.85464 1.86368 1.26571 1.96724 1.28034 1.55233 1.85930 1.23400 1.20958 1.00627 0.73591 0.72318 0.72683 1.93457 1.59371 1.77536 1.68515 1.93508 1.85424 1.47206 1.72723 1.29412 1.18903 1.32106 1.08775 1.20439 0.97723 0.92713 0.90708 1.21320 0.93761 1.11972 0.99399 1.18053 0.92275 0.86703 0.91364 1.20269 1.04842 1.14063 1.08581 0.88074 1.27042 1.03855 0.93183 0.94602 1.69834 1.37560 1.10189 1.24320 0.85059 0.75051 0.79388 0.79303 1.17660 1.19355 1.17925 1.21248 0.97683 1.08078 0.93778 1.20117 0.94735 0.97031 0.83321 1.98323 1.98494 1.93500 1.15067 0.74708 0.87598 0.85900 0.94273 0.89979 0.76025 0.74319 0.84964 0.86042 0.88927 0.86159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -5.33 19.25 74.32 1.43 -3.90 16 2 C -0.21 -5.21 13.06 31.13 0.41 -4.81 16 3 C 0.00 -0.07 5.04 28.79 0.15 0.08 16 4 C 0.16 4.05 2.67 44.99 0.12 4.17 16 5 H 0.10 2.63 7.52 -2.39 -0.02 2.61 16 6 C 0.06 1.39 6.88 71.98 0.50 1.89 16 7 O -0.57 -12.34 12.83 -148.98 -1.91 -14.25 16 8 N -1.10 -33.64 4.75 -169.39 -0.80 -34.45 16 9 S 2.71 106.76 5.00 -56.49 -0.28 106.48 16 10 O -1.00 -41.75 16.33 -128.00 -2.09 -43.84 16 11 O -1.00 -44.82 16.59 -128.00 -2.12 -46.95 16 12 C -0.80 -34.00 5.01 22.48 0.11 -33.89 16 13 C 0.00 0.17 9.52 22.21 0.21 0.38 16 14 C -0.24 -10.68 9.79 22.73 0.22 -10.46 16 15 C 0.12 5.72 5.56 -21.30 -0.12 5.60 16 16 C -0.45 -20.61 9.06 23.46 0.21 -20.40 16 17 H 0.10 4.25 7.88 -2.91 -0.02 4.23 16 18 C 0.03 1.43 5.21 85.26 0.44 1.87 16 19 N -0.80 -36.94 10.89 21.83 0.24 -36.70 16 20 Si 0.99 32.22 29.58 68.60 2.03 34.24 16 21 H -0.25 -7.90 7.11 99.48 0.71 -7.19 16 22 H -0.27 -8.47 7.11 99.48 0.71 -7.76 16 23 H -0.26 -8.03 7.11 99.48 0.71 -7.33 16 24 C -0.19 -8.94 8.45 22.75 0.19 -8.75 16 25 C 0.08 3.39 5.57 22.27 0.12 3.51 16 26 Cl -0.08 -3.32 26.39 -2.72 -0.07 -3.39 16 27 H 0.24 4.05 7.80 -4.43 -0.03 4.02 16 28 H 0.11 2.11 7.73 -2.39 -0.02 2.09 16 29 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.04 1.16 6.44 -2.39 -0.02 1.15 16 31 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 32 H 0.39 6.06 9.12 -74.06 -0.68 5.38 16 33 H 0.42 12.01 8.86 -96.74 -0.86 11.15 16 34 H 0.13 5.03 7.31 -2.91 -0.02 5.01 16 35 H 0.12 4.78 8.06 -2.91 -0.02 4.76 16 36 H 0.30 12.52 8.30 -92.71 -0.77 11.75 16 37 H 0.12 5.99 6.20 -2.91 -0.02 5.97 16 Total: -1.00 -63.05 350.23 -1.41 -64.46 By element: Atomic # 1 Polarization: 39.49 SS G_CDS: -0.39 Total: 39.10 kcal Atomic # 6 Polarization: -68.70 SS G_CDS: 4.00 Total: -64.70 kcal Atomic # 7 Polarization: -70.58 SS G_CDS: -0.57 Total: -71.15 kcal Atomic # 8 Polarization: -98.91 SS G_CDS: -6.12 Total: -105.03 kcal Atomic # 14 Polarization: 32.22 SS G_CDS: 2.03 Total: 34.24 kcal Atomic # 16 Polarization: 106.76 SS G_CDS: -0.28 Total: 106.48 kcal Atomic # 17 Polarization: -3.32 SS G_CDS: -0.07 Total: -3.39 kcal Total: -63.05 -1.41 -64.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663018754.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.653 kcal (2) G-P(sol) polarization free energy of solvation -63.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds