Wall clock time and date at job start Wed Apr 1 2020 01:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35914 * 117.00381 * 2 1 4 4 C 1.38751 * 120.04236 * 359.97438 * 3 2 1 5 5 C 1.38124 * 119.95404 * 180.02562 * 4 3 2 6 6 C 1.38363 * 120.04303 * 0.25055 * 5 4 3 7 7 Br 1.89102 * 119.95418 * 179.72807 * 6 5 4 8 8 C 1.38326 * 120.09286 * 359.49437 * 6 5 4 9 9 C 1.50704 * 119.97644 * 180.25426 * 8 6 5 10 10 H 1.08994 * 109.47033 * 40.25617 * 9 8 6 11 11 C 1.53003 * 109.47008 * 280.25501 * 9 8 6 12 12 O 1.42904 * 109.46803 * 303.31235 * 11 9 8 13 13 N 1.46896 * 109.46827 * 160.25307 * 9 8 6 14 14 C 1.46894 * 111.00413 * 295.85906 * 13 9 8 15 15 C 1.46898 * 110.99734 * 171.90166 * 13 9 8 16 16 C 1.50706 * 109.47095 * 184.07430 * 15 13 9 17 17 H 1.07999 * 119.99972 * 359.97438 * 16 15 13 18 18 C 1.37878 * 120.00026 * 180.02562 * 16 15 13 19 19 N 1.31519 * 119.99941 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00260 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47355 * 89.99892 * 20 18 16 22 22 H 1.48504 * 109.47365 * 210.00024 * 20 18 16 23 23 H 1.48502 * 109.47004 * 329.99767 * 20 18 16 24 24 C 1.38161 * 120.04235 * 0.51028 * 8 6 5 25 25 H 1.09002 * 109.47516 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47598 * 300.00539 * 1 2 3 27 27 H 1.09004 * 109.47247 * 60.00202 * 1 2 3 28 28 H 1.07997 * 120.02223 * 0.02562 * 4 3 2 29 29 H 1.07992 * 119.97424 * 179.97438 * 5 4 3 30 30 H 1.08993 * 109.47033 * 63.31046 * 11 9 8 31 31 H 1.08993 * 109.46620 * 183.31030 * 11 9 8 32 32 H 0.96699 * 113.99469 * 180.02562 * 12 11 9 33 33 H 1.09002 * 109.47130 * 60.00138 * 14 13 9 34 34 H 1.09001 * 109.47082 * 180.02562 * 14 13 9 35 35 H 1.08998 * 109.47197 * 300.00337 * 14 13 9 36 36 H 1.08998 * 109.47885 * 304.07661 * 15 13 9 37 37 H 1.09001 * 109.47389 * 64.07635 * 15 13 9 38 38 H 0.96996 * 120.00046 * 179.97438 * 19 18 16 39 39 H 1.08004 * 120.01708 * 179.72713 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2913 2.3752 -0.0005 5 6 1.9203 3.6049 -0.0011 6 6 3.3021 3.6761 -0.0063 7 35 4.1607 5.3610 -0.0148 8 6 4.0564 2.5167 -0.0005 9 6 5.5613 2.5973 -0.0004 10 1 5.8819 3.4031 0.6599 11 6 6.0572 2.8742 -1.4211 12 8 5.5720 1.8584 -2.3013 13 7 6.1198 1.3242 0.4739 14 6 5.7442 1.0726 1.8715 15 6 7.5790 1.2950 0.3074 16 6 8.1036 -0.0593 0.7100 17 1 7.4212 -0.8218 1.0554 18 6 9.4547 -0.3244 0.6384 19 7 10.2857 0.6044 0.2182 20 14 10.1050 -2.0027 1.1380 21 1 10.1187 -2.9005 -0.0447 22 1 11.4850 -1.8612 1.6681 23 1 9.2283 -2.5807 2.1881 24 6 3.4311 1.2847 0.0000 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 0.2127 2.3200 -0.0005 29 1 1.3332 4.5113 -0.0019 30 1 5.6906 3.8462 -1.7509 31 1 7.1471 2.8742 -1.4318 32 1 5.8486 1.9702 -3.2212 33 1 4.6582 1.0300 1.9539 34 1 6.1711 0.1240 2.1974 35 1 6.1250 1.8772 2.5006 36 1 7.8297 1.4862 -0.7360 37 1 8.0319 2.0616 0.9362 38 1 11.2363 0.4180 0.1682 39 1 4.0204 0.3796 0.0001 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298398564.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:43:43 Heat of formation + Delta-G solvation = -38.225747 kcal Electronic energy + Delta-G solvation = -22660.096287 eV Core-core repulsion = 19229.228491 eV Total energy + Delta-G solvation = -3430.867797 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 343.057 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.25892 -38.47541 -36.66511 -35.27848 -32.73697 -31.88278 -31.17122 -29.39968 -28.09028 -27.25811 -26.92894 -24.25546 -23.29228 -22.37478 -21.06335 -19.41487 -17.82517 -16.88439 -16.49809 -16.20909 -15.76609 -15.64207 -14.94970 -14.79106 -14.13742 -14.02796 -13.78167 -13.55142 -13.05081 -12.79700 -12.56292 -12.29857 -11.97058 -11.88829 -11.69569 -11.47714 -11.30290 -10.97244 -10.84797 -10.69492 -10.56523 -10.42579 -10.19937 -10.08393 -9.82818 -9.29357 -9.08138 -8.60997 -8.39006 -8.02779 -7.20165 -6.00631 -4.00437 1.28570 1.42557 1.79684 3.26362 3.34752 3.40467 3.44124 3.73614 4.42799 4.64899 4.72739 4.84925 4.90664 5.02143 5.02688 5.22416 5.34083 5.36316 5.52473 5.53698 5.65412 5.89722 5.92983 6.04948 6.14009 6.19778 6.25984 6.40176 6.44130 6.53787 6.78341 6.86316 7.31176 7.36700 7.43230 7.81063 8.08109 8.18271 8.21908 8.57247 9.06183 9.63004 11.10679 Molecular weight = 343.06amu Principal moments of inertia in cm(-1) A = 0.012044 B = 0.004488 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2324.336661 B = 6237.218642 C = 7890.761380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.311 6.311 3 C 0.133 3.867 4 C -0.214 4.214 5 C -0.059 4.059 6 C -0.131 4.131 7 Br -0.060 7.060 8 C 0.011 3.989 9 C 0.115 3.885 10 H 0.063 0.937 11 C 0.085 3.915 12 O -0.549 6.549 13 N -0.522 5.522 14 C 0.029 3.971 15 C 0.191 3.809 16 C -0.504 4.504 17 H 0.064 0.936 18 C 0.055 3.945 19 N -0.900 5.900 20 Si 0.897 3.103 21 H -0.280 1.280 22 H -0.288 1.288 23 H -0.274 1.274 24 C -0.102 4.102 25 H 0.098 0.902 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.130 0.870 29 H 0.129 0.871 30 H 0.042 0.958 31 H 0.064 0.936 32 H 0.367 0.633 33 H 0.048 0.952 34 H 0.080 0.920 35 H 0.011 0.989 36 H 0.040 0.960 37 H -0.012 1.012 38 H 0.260 0.740 39 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.843 8.578 -1.898 20.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.224 6.224 3 C 0.087 3.913 4 C -0.234 4.234 5 C -0.079 4.079 6 C -0.211 4.211 7 Br 0.025 6.975 8 C 0.009 3.991 9 C 0.006 3.994 10 H 0.081 0.919 11 C 0.006 3.994 12 O -0.352 6.352 13 N -0.247 5.247 14 C -0.120 4.120 15 C 0.067 3.933 16 C -0.542 4.542 17 H 0.082 0.918 18 C -0.145 4.145 19 N -0.540 5.540 20 Si 0.725 3.275 21 H -0.206 1.206 22 H -0.214 1.214 23 H -0.199 1.199 24 C -0.121 4.121 25 H 0.117 0.883 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.147 0.853 29 H 0.147 0.853 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.212 0.788 33 H 0.067 0.933 34 H 0.099 0.901 35 H 0.029 0.971 36 H 0.058 0.942 37 H 0.006 0.994 38 H 0.070 0.930 39 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -18.705 8.447 -1.651 20.590 hybrid contribution 0.592 -0.118 0.236 0.648 sum -18.113 8.329 -1.416 19.987 Atomic orbital electron populations 1.23040 0.78786 1.03833 1.01122 1.86137 1.21009 1.26846 1.88450 1.19204 0.92548 0.83998 0.95515 1.21097 0.99802 0.91886 1.10619 1.20668 0.92078 0.97626 0.97492 1.21499 0.94666 0.90746 1.14140 1.96610 1.80272 1.22778 1.97865 1.19468 0.95638 0.90566 0.93460 1.20707 0.89170 0.93989 0.95539 0.91934 1.22247 0.98594 0.89655 0.88859 1.86623 1.76749 1.50851 1.20985 1.62096 1.15648 1.27961 1.19012 1.22383 0.98999 1.01659 0.88941 1.19819 0.79451 0.96893 0.97180 1.21158 0.91899 0.98072 1.43110 0.91791 1.24959 0.96915 0.97093 0.95578 1.69953 1.03175 1.33233 1.47596 0.86509 0.77955 0.84215 0.78790 1.20646 1.21415 1.19886 1.20516 0.90364 0.99486 1.01755 0.88321 0.92794 0.92779 0.85255 0.85310 0.93948 0.91782 0.78758 0.93346 0.90146 0.97067 0.94248 0.99386 0.93004 0.82380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.31 -4.29 10.50 -19.47 -0.20 -4.50 16 3 C 0.13 1.96 6.69 -39.22 -0.26 1.70 16 4 C -0.21 -2.65 9.04 -39.43 -0.36 -3.00 16 5 C -0.06 -0.75 9.78 -39.58 -0.39 -1.13 16 6 C -0.13 -1.94 6.21 -39.50 -0.25 -2.18 16 7 Br -0.06 -0.81 30.80 -68.01 -2.09 -2.91 16 8 C 0.01 0.19 4.05 -104.62 -0.42 -0.23 16 9 C 0.12 2.16 1.49 -68.86 -0.10 2.06 16 10 H 0.06 1.19 7.15 -51.93 -0.37 0.82 16 11 C 0.08 1.50 6.08 37.16 0.23 1.73 16 12 O -0.55 -9.81 13.09 -35.23 -0.46 -10.27 16 13 N -0.52 -11.39 3.56 -237.73 -0.85 -12.24 16 14 C 0.03 0.58 8.68 60.06 0.52 1.10 16 15 C 0.19 4.93 4.29 -4.97 -0.02 4.91 16 16 C -0.50 -14.10 8.43 -34.44 -0.29 -14.39 16 17 H 0.06 1.78 6.70 -52.49 -0.35 1.43 16 18 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 19 N -0.90 -26.55 13.29 55.43 0.74 -25.82 16 20 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 24 C -0.10 -1.75 7.57 -39.44 -0.30 -2.05 16 25 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 27 H 0.05 0.40 7.66 -51.93 -0.40 0.01 16 28 H 0.13 1.20 6.30 -52.49 -0.33 0.87 16 29 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 30 H 0.04 0.66 6.93 -51.93 -0.36 0.30 16 31 H 0.06 1.24 6.03 -51.93 -0.31 0.93 16 32 H 0.37 4.85 9.12 45.56 0.42 5.27 16 33 H 0.05 0.88 5.87 -51.93 -0.30 0.58 16 34 H 0.08 1.73 6.35 -51.93 -0.33 1.40 16 35 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 36 H 0.04 1.07 5.88 -51.93 -0.31 0.77 16 37 H -0.01 -0.32 8.14 -51.93 -0.42 -0.74 16 38 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 39 H 0.16 3.09 6.77 -52.48 -0.36 2.73 16 LS Contribution 332.86 15.07 5.02 5.02 Total: -1.00 -31.70 332.86 -7.85 -39.54 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -4.23 Total: 3.24 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: -0.75 Total: -8.79 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: -0.11 Total: -38.06 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: -0.67 Total: -14.76 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 35 Polarization: -0.81 SS G_CDS: -2.09 Total: -2.91 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.70 -7.85 -39.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298398564.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.319 kcal (2) G-P(sol) polarization free energy of solvation -31.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds