Wall clock time and date at job start Wed Apr 1 2020 01:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35914 * 117.00381 * 2 1 4 4 C 1.38751 * 120.04236 * 359.97438 * 3 2 1 5 5 C 1.38124 * 119.95404 * 180.02562 * 4 3 2 6 6 C 1.38363 * 120.04303 * 0.25055 * 5 4 3 7 7 Br 1.89102 * 119.95418 * 179.72807 * 6 5 4 8 8 C 1.38326 * 120.09286 * 359.49437 * 6 5 4 9 9 C 1.50704 * 119.97644 * 180.25426 * 8 6 5 10 10 H 1.08994 * 109.47033 * 40.25617 * 9 8 6 11 11 C 1.53003 * 109.47008 * 280.25501 * 9 8 6 12 12 O 1.42904 * 109.46803 * 303.31235 * 11 9 8 13 13 N 1.46896 * 109.46827 * 160.25307 * 9 8 6 14 14 C 1.46894 * 111.00413 * 295.85906 * 13 9 8 15 15 C 1.46898 * 110.99734 * 171.90166 * 13 9 8 16 16 C 1.50706 * 109.47095 * 184.07430 * 15 13 9 17 17 H 1.07999 * 119.99972 * 359.97438 * 16 15 13 18 18 C 1.37878 * 120.00026 * 180.02562 * 16 15 13 19 19 N 1.31519 * 119.99941 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00260 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47355 * 89.99892 * 20 18 16 22 22 H 1.48504 * 109.47365 * 210.00024 * 20 18 16 23 23 H 1.48502 * 109.47004 * 329.99767 * 20 18 16 24 24 C 1.38161 * 120.04235 * 0.51028 * 8 6 5 25 25 H 1.09002 * 109.47516 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47598 * 300.00539 * 1 2 3 27 27 H 1.09004 * 109.47247 * 60.00202 * 1 2 3 28 28 H 1.07997 * 120.02223 * 0.02562 * 4 3 2 29 29 H 1.07992 * 119.97424 * 179.97438 * 5 4 3 30 30 H 1.08993 * 109.47033 * 63.31046 * 11 9 8 31 31 H 1.08993 * 109.46620 * 183.31030 * 11 9 8 32 32 H 0.96699 * 113.99469 * 180.02562 * 12 11 9 33 33 H 1.09002 * 109.47130 * 60.00138 * 14 13 9 34 34 H 1.09001 * 109.47082 * 180.02562 * 14 13 9 35 35 H 1.08998 * 109.47197 * 300.00337 * 14 13 9 36 36 H 1.08998 * 109.47885 * 304.07661 * 15 13 9 37 37 H 1.09001 * 109.47389 * 64.07635 * 15 13 9 38 38 H 0.96996 * 120.00046 * 179.97438 * 19 18 16 39 39 H 1.08004 * 120.01708 * 179.72713 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2913 2.3752 -0.0005 5 6 1.9203 3.6049 -0.0011 6 6 3.3021 3.6761 -0.0063 7 35 4.1607 5.3610 -0.0148 8 6 4.0564 2.5167 -0.0005 9 6 5.5613 2.5973 -0.0004 10 1 5.8819 3.4031 0.6599 11 6 6.0572 2.8742 -1.4211 12 8 5.5720 1.8584 -2.3013 13 7 6.1198 1.3242 0.4739 14 6 5.7442 1.0726 1.8715 15 6 7.5790 1.2950 0.3074 16 6 8.1036 -0.0593 0.7100 17 1 7.4212 -0.8218 1.0554 18 6 9.4547 -0.3244 0.6384 19 7 10.2857 0.6044 0.2182 20 14 10.1050 -2.0027 1.1380 21 1 10.1187 -2.9005 -0.0447 22 1 11.4850 -1.8612 1.6681 23 1 9.2283 -2.5807 2.1881 24 6 3.4311 1.2847 0.0000 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 0.2127 2.3200 -0.0005 29 1 1.3332 4.5113 -0.0019 30 1 5.6906 3.8462 -1.7509 31 1 7.1471 2.8742 -1.4318 32 1 5.8486 1.9702 -3.2212 33 1 4.6582 1.0300 1.9539 34 1 6.1711 0.1240 2.1974 35 1 6.1250 1.8772 2.5006 36 1 7.8297 1.4862 -0.7360 37 1 8.0319 2.0616 0.9362 38 1 11.2363 0.4180 0.1682 39 1 4.0204 0.3796 0.0001 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298398564.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:43:43 Heat of formation + Delta-G solvation = -60.986707 kcal Electronic energy + Delta-G solvation = -22661.083277 eV Core-core repulsion = 19229.228491 eV Total energy + Delta-G solvation = -3431.854786 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 343.057 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.38055 -39.76778 -37.92370 -36.85645 -34.74624 -33.04087 -32.54281 -30.58571 -29.44597 -29.01324 -27.88810 -26.08522 -24.73759 -23.68371 -22.44157 -20.89872 -19.09312 -18.42748 -18.20854 -17.43845 -16.76067 -16.70268 -16.64593 -16.40227 -15.77636 -15.43939 -15.00608 -14.77398 -14.46030 -14.21188 -14.04181 -13.93553 -13.34831 -13.27330 -12.97135 -12.79619 -12.76526 -12.56714 -12.44142 -12.28111 -12.18876 -11.97055 -11.63452 -11.35056 -11.21439 -11.14654 -10.69996 -10.50826 -9.79509 -9.10108 -8.99236 -8.18821 -6.26821 0.16856 0.32112 0.69633 1.41412 1.42971 1.53577 2.36410 2.41305 2.61272 3.11705 3.15576 3.45463 3.65655 3.81322 4.11195 4.17954 4.29412 4.40678 4.41520 4.45164 4.45697 4.50831 4.61329 4.71727 4.75170 4.77245 5.01589 5.04612 5.08803 5.20327 5.27086 5.31566 5.42872 5.61226 5.70667 6.06142 6.31046 6.45077 6.61889 6.87853 6.98056 7.41622 8.92670 Molecular weight = 343.06amu Principal moments of inertia in cm(-1) A = 0.012044 B = 0.004488 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2324.336661 B = 6237.218642 C = 7890.761380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.336 6.336 3 C 0.133 3.867 4 C -0.200 4.200 5 C -0.048 4.048 6 C -0.142 4.142 7 Br -0.052 7.052 8 C -0.002 4.002 9 C 0.114 3.886 10 H 0.058 0.942 11 C 0.091 3.909 12 O -0.565 6.565 13 N -0.527 5.527 14 C 0.037 3.963 15 C 0.209 3.791 16 C -0.522 4.522 17 H 0.061 0.939 18 C 0.005 3.995 19 N -0.933 5.933 20 Si 0.966 3.034 21 H -0.274 1.274 22 H -0.282 1.282 23 H -0.266 1.266 24 C -0.128 4.128 25 H 0.116 0.884 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.168 0.832 29 H 0.161 0.839 30 H 0.067 0.933 31 H 0.039 0.961 32 H 0.386 0.614 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.008 0.992 36 H 0.020 0.980 37 H -0.042 1.042 38 H 0.264 0.736 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.544 8.687 -1.828 23.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.249 6.249 3 C 0.087 3.913 4 C -0.219 4.219 5 C -0.068 4.068 6 C -0.221 4.221 7 Br 0.033 6.967 8 C -0.004 4.004 9 C 0.005 3.995 10 H 0.075 0.925 11 C 0.013 3.987 12 O -0.371 6.371 13 N -0.252 5.252 14 C -0.111 4.111 15 C 0.083 3.917 16 C -0.560 4.560 17 H 0.079 0.921 18 C -0.193 4.193 19 N -0.573 5.573 20 Si 0.791 3.209 21 H -0.200 1.200 22 H -0.207 1.207 23 H -0.190 1.190 24 C -0.148 4.148 25 H 0.134 0.866 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.186 0.814 29 H 0.179 0.821 30 H 0.085 0.915 31 H 0.057 0.943 32 H 0.234 0.766 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.027 0.973 36 H 0.038 0.962 37 H -0.024 1.024 38 H 0.072 0.928 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -21.432 8.558 -1.592 23.132 hybrid contribution 1.297 -0.131 0.175 1.315 sum -20.135 8.428 -1.417 21.874 Atomic orbital electron populations 1.23415 0.76019 1.05701 1.02684 1.86114 1.23908 1.26694 1.88209 1.19217 0.91835 0.85328 0.94934 1.21470 1.01530 0.90569 1.08354 1.21073 0.91211 0.99096 0.95419 1.21612 0.95647 0.90352 1.14521 1.96615 1.80484 1.21747 1.97853 1.19201 0.94095 0.91600 0.95522 1.20728 0.90980 0.92026 0.95719 0.92496 1.22141 0.97032 0.90711 0.88810 1.86575 1.76824 1.51245 1.22466 1.61980 1.12940 1.30337 1.19908 1.22300 1.00161 1.00556 0.88129 1.19439 0.81914 0.95161 0.95143 1.21461 0.92394 0.98853 1.43290 0.92092 1.25830 0.97114 1.01015 0.95370 1.70074 1.03536 1.35298 1.48404 0.85434 0.77424 0.79393 0.78672 1.19997 1.20719 1.19027 1.20267 0.91753 0.98292 1.04461 0.86591 0.91061 0.91174 0.81417 0.82106 0.91514 0.94297 0.76615 0.91183 0.91803 0.97297 0.96171 1.02399 0.92757 0.85699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.34 -8.69 10.50 -92.58 -0.97 -9.66 16 3 C 0.13 3.69 6.69 22.50 0.15 3.84 16 4 C -0.20 -4.19 9.04 22.37 0.20 -3.99 16 5 C -0.05 -1.06 9.78 22.27 0.22 -0.84 16 6 C -0.14 -3.95 6.21 22.32 0.14 -3.81 16 7 Br -0.05 -1.33 30.80 -20.37 -0.63 -1.96 16 8 C 0.00 -0.06 4.05 -19.86 -0.08 -0.14 16 9 C 0.11 4.43 1.49 44.17 0.07 4.49 16 10 H 0.06 2.24 7.15 -2.39 -0.02 2.23 16 11 C 0.09 3.34 6.08 71.98 0.44 3.78 16 12 O -0.57 -20.65 13.09 -148.98 -1.95 -22.60 16 13 N -0.53 -24.06 3.56 -906.06 -3.22 -27.28 16 14 C 0.04 1.55 8.68 127.69 1.11 2.66 16 15 C 0.21 11.38 4.29 85.56 0.37 11.74 16 16 C -0.52 -30.20 8.43 25.60 0.22 -29.98 16 17 H 0.06 3.49 6.70 -2.91 -0.02 3.47 16 18 C 0.00 0.27 5.46 84.65 0.46 0.73 16 19 N -0.93 -56.46 13.29 21.45 0.28 -56.17 16 20 Si 0.97 45.14 29.54 68.60 2.03 47.17 16 21 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 22 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 23 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 24 C -0.13 -4.42 7.57 22.36 0.17 -4.25 16 25 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.07 0.76 7.66 -2.39 -0.02 0.74 16 27 H 0.07 0.76 7.66 -2.38 -0.02 0.74 16 28 H 0.17 2.19 6.30 -2.91 -0.02 2.17 16 29 H 0.16 2.49 8.06 -2.91 -0.02 2.47 16 30 H 0.07 2.08 6.93 -2.39 -0.02 2.06 16 31 H 0.04 1.60 6.03 -2.39 -0.01 1.59 16 32 H 0.39 10.33 9.12 -74.06 -0.68 9.66 16 33 H 0.07 2.63 5.87 -2.39 -0.01 2.61 16 34 H 0.06 2.86 6.35 -2.39 -0.02 2.84 16 35 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 36 H 0.02 1.17 5.88 -2.39 -0.01 1.16 16 37 H -0.04 -2.46 8.14 -2.39 -0.02 -2.48 16 38 H 0.26 15.02 8.31 -92.71 -0.77 14.24 16 39 H 0.13 5.10 6.77 -2.91 -0.02 5.08 16 Total: -1.00 -70.50 332.86 0.51 -69.99 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: 0.41 Total: 14.94 kcal Atomic # 6 Polarization: -19.00 SS G_CDS: 4.57 Total: -14.43 kcal Atomic # 7 Polarization: -80.52 SS G_CDS: -2.94 Total: -83.45 kcal Atomic # 8 Polarization: -29.34 SS G_CDS: -2.92 Total: -32.26 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Atomic # 35 Polarization: -1.33 SS G_CDS: -0.63 Total: -1.96 kcal Total: -70.50 0.51 -69.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298398564.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.003 kcal (2) G-P(sol) polarization free energy of solvation -70.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds