Wall clock time and date at job start Wed Apr 1 2020 01:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47524 * 2 1 4 4 C 1.50706 * 109.47011 * 240.00069 * 2 1 3 5 5 H 1.08004 * 119.99710 * 239.99761 * 4 2 1 6 6 C 1.37875 * 119.99843 * 60.00115 * 4 2 1 7 7 N 1.31509 * 120.00465 * 0.02562 * 6 4 2 8 8 Si 1.86808 * 119.99940 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.46823 * 89.99677 * 8 6 4 10 10 H 1.48495 * 109.47180 * 210.00050 * 8 6 4 11 11 H 1.48500 * 109.46688 * 330.00160 * 8 6 4 12 12 N 1.46902 * 109.47083 * 120.00512 * 2 1 3 13 13 C 1.46906 * 110.99573 * 274.99770 * 12 2 1 14 14 C 1.52998 * 109.47020 * 179.97438 * 13 12 2 15 15 H 1.09008 * 109.47264 * 60.00068 * 14 13 12 16 16 O 1.42897 * 109.47106 * 300.00189 * 14 13 12 17 17 C 1.52996 * 109.47077 * 179.97438 * 14 13 12 18 18 O 1.42901 * 109.46927 * 184.99838 * 17 14 13 19 19 C 1.35900 * 116.99860 * 179.97438 * 18 17 14 20 20 C 1.38762 * 120.05432 * 359.72932 * 19 18 17 21 21 C 1.38126 * 119.96855 * 179.72112 * 20 19 18 22 22 C 1.38274 * 120.06421 * 0.57448 * 21 20 19 23 23 C 1.38341 * 120.09827 * 359.69889 * 22 21 20 24 24 Br 1.89096 * 119.97938 * 180.02562 * 23 22 21 25 25 C 1.38253 * 120.03922 * 0.02562 * 23 22 21 26 26 H 1.09003 * 109.46954 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47023 * 299.99973 * 1 2 3 28 28 H 1.09004 * 109.46766 * 59.99858 * 1 2 3 29 29 H 0.96994 * 120.00796 * 179.97438 * 7 6 4 30 30 H 1.00896 * 111.00219 * 38.95409 * 12 2 1 31 31 H 1.09002 * 109.46991 * 299.99841 * 13 12 2 32 32 H 1.09000 * 109.47202 * 60.00133 * 13 12 2 33 33 H 0.96697 * 114.00275 * 299.99527 * 16 14 13 34 34 H 1.09000 * 109.47398 * 304.99994 * 17 14 13 35 35 H 1.09003 * 109.47206 * 65.00488 * 17 14 13 36 36 H 1.08006 * 120.01042 * 0.02562 * 20 19 18 37 37 H 1.07994 * 119.96846 * 180.27343 * 21 20 19 38 38 H 1.07992 * 119.95081 * 179.72155 * 22 21 20 39 39 H 1.07995 * 120.03586 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6035 8 14 2.3225 -1.1195 -4.0081 9 1 1.3448 -2.1615 -4.4124 10 1 2.4872 -0.1402 -5.1121 11 1 3.6308 -1.7565 -3.7120 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2225 2.3469 14 6 2.5950 -0.5333 3.5744 15 1 3.5904 -0.9274 3.3691 16 8 1.7078 -1.6127 3.8740 17 6 2.6610 0.4199 4.7694 18 8 3.2483 -0.2540 5.8843 19 6 3.3818 0.4573 7.0346 20 6 2.9614 1.7786 7.0874 21 6 3.0927 2.4981 8.2591 22 6 3.6535 1.9067 9.3761 23 6 4.0787 0.5912 9.3248 24 35 4.8445 -0.2145 10.8546 25 6 3.9441 -0.1346 8.1559 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 0.7095 1.1619 -3.4844 30 1 1.4496 -1.4980 1.4099 31 1 2.7589 1.0461 2.1182 32 1 1.0871 0.6162 2.5525 33 1 0.8020 -1.3352 4.0675 34 1 3.2670 1.2877 4.5089 35 1 1.6540 0.7452 5.0308 36 1 2.5272 2.2427 6.2141 37 1 2.7614 3.5252 8.3015 38 1 3.7593 2.4723 10.2899 39 1 4.2757 -1.1616 8.1161 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772046607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:40:01 Heat of formation + Delta-G solvation = -63.316785 kcal Electronic energy + Delta-G solvation = -20983.633100 eV Core-core repulsion = 17551.677274 eV Total energy + Delta-G solvation = -3431.955826 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 343.057 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.50237 -38.40854 -37.14120 -35.36192 -32.58681 -32.55455 -31.31390 -30.12563 -29.36581 -28.04214 -25.24426 -24.64367 -23.10637 -22.10248 -21.33443 -20.21800 -18.43894 -17.10110 -16.65637 -16.39626 -16.32073 -15.57183 -15.06288 -14.90919 -14.75705 -14.07842 -13.93022 -13.85473 -13.27500 -13.25514 -12.74530 -12.68727 -12.09176 -11.74506 -11.68129 -11.53435 -11.42899 -10.98481 -10.90226 -10.86919 -10.70423 -10.66084 -10.59286 -10.20024 -10.17035 -9.76676 -9.20743 -9.03199 -8.58415 -8.39554 -7.31918 -6.01836 -4.04995 0.68944 0.99501 1.19902 2.87230 3.24866 3.31628 3.37906 3.43094 4.34664 4.38020 4.43360 4.56664 4.66130 4.73101 4.82921 4.88587 5.03790 5.14533 5.27230 5.29992 5.40748 5.45660 5.67323 5.75491 5.88458 5.95410 6.01843 6.16125 6.23085 6.60914 6.77321 7.02042 7.07615 7.28016 7.68880 7.69999 7.84550 8.21678 8.48670 8.56031 9.02583 9.60631 11.05293 Molecular weight = 343.06amu Principal moments of inertia in cm(-1) A = 0.035980 B = 0.001715 C = 0.001681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.021047 B =16323.254827 C =16654.953878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.211 3.789 3 H 0.032 0.968 4 C -0.495 4.495 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.899 3.101 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.273 1.273 12 N -0.678 5.678 13 C 0.035 3.965 14 C 0.113 3.887 15 H 0.116 0.884 16 O -0.548 6.548 17 C 0.027 3.973 18 O -0.298 6.298 19 C 0.142 3.858 20 C -0.197 4.197 21 C -0.072 4.072 22 C -0.135 4.135 23 C -0.052 4.052 24 Br -0.046 7.046 25 C -0.127 4.127 26 H 0.029 0.971 27 H 0.003 0.997 28 H 0.089 0.911 29 H 0.260 0.740 30 H 0.334 0.666 31 H 0.076 0.924 32 H 0.023 0.977 33 H 0.368 0.632 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.135 0.865 37 H 0.134 0.866 38 H 0.133 0.867 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.282 3.437 28.335 28.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.104 3.896 3 H 0.050 0.950 4 C -0.534 4.534 5 H 0.082 0.918 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.727 3.273 9 H -0.208 1.208 10 H -0.214 1.214 11 H -0.198 1.198 12 N -0.309 5.309 13 C -0.096 4.096 14 C 0.053 3.947 15 H 0.134 0.866 16 O -0.352 6.352 17 C -0.049 4.049 18 O -0.211 6.211 19 C 0.095 3.905 20 C -0.216 4.216 21 C -0.091 4.091 22 C -0.155 4.155 23 C -0.131 4.131 24 Br 0.040 6.960 25 C -0.148 4.148 26 H 0.048 0.952 27 H 0.022 0.978 28 H 0.108 0.892 29 H 0.069 0.931 30 H 0.152 0.848 31 H 0.094 0.906 32 H 0.041 0.959 33 H 0.215 0.785 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.153 0.847 37 H 0.152 0.848 38 H 0.151 0.849 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 5.766 2.774 28.437 29.149 hybrid contribution -1.491 0.622 -0.979 1.888 sum 4.276 3.395 27.459 27.997 Atomic orbital electron populations 1.22440 1.00686 0.99311 1.00412 1.19200 0.89614 0.94354 0.86478 0.94972 1.21154 1.30235 1.12464 0.89507 0.91838 1.24959 0.95340 0.95206 0.99114 1.69871 1.37407 1.23177 1.23402 0.86483 0.79301 0.79216 0.82320 1.20802 1.21388 1.19825 1.60707 1.58721 1.08850 1.02601 1.22432 0.98978 0.96541 0.91660 1.22094 0.96036 0.87032 0.89536 0.86595 1.86665 1.22950 1.33745 1.91856 1.23772 0.98107 0.97123 0.85908 1.86189 1.76819 1.39856 1.18187 1.18950 0.94520 0.90300 0.86716 1.21483 1.05728 0.94086 1.00284 1.20964 0.96669 0.99850 0.91653 1.21000 1.01353 0.93382 0.99796 1.21480 1.03153 0.95815 0.92688 1.96739 1.82074 1.81875 1.35336 1.20329 1.03249 1.01266 0.89938 0.95195 0.97803 0.89194 0.93053 0.84811 0.90610 0.95939 0.78514 0.90698 0.91600 0.84679 0.84772 0.84928 0.84080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.94 8.94 37.16 0.33 -3.61 16 2 C 0.21 5.16 2.57 -68.86 -0.18 4.98 16 3 H 0.03 0.86 7.80 -51.93 -0.40 0.45 16 4 C -0.49 -13.57 8.84 -34.44 -0.30 -13.87 16 5 H 0.06 1.77 7.81 -52.48 -0.41 1.36 16 6 C 0.05 1.49 5.30 -17.82 -0.09 1.40 16 7 N -0.90 -25.37 11.32 55.43 0.63 -24.74 16 8 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 12 N -0.68 -13.85 6.23 -107.95 -0.67 -14.53 16 13 C 0.03 0.55 5.19 -3.82 -0.02 0.53 16 14 C 0.11 1.51 3.52 -26.73 -0.09 1.42 16 15 H 0.12 1.72 8.14 -51.92 -0.42 1.30 16 16 O -0.55 -7.67 12.64 -40.06 -0.51 -8.18 16 17 C 0.03 0.29 4.38 37.16 0.16 0.45 16 18 O -0.30 -3.68 10.10 -24.26 -0.25 -3.93 16 19 C 0.14 1.57 6.69 -39.22 -0.26 1.31 16 20 C -0.20 -1.81 9.04 -39.43 -0.36 -2.16 16 21 C -0.07 -0.57 10.04 -39.61 -0.40 -0.97 16 22 C -0.14 -1.12 9.78 -39.53 -0.39 -1.51 16 23 C -0.05 -0.49 6.22 -39.54 -0.25 -0.74 16 24 Br -0.05 -0.39 33.70 -68.01 -2.29 -2.69 16 25 C -0.13 -1.35 9.73 -39.41 -0.38 -1.73 16 26 H 0.03 0.67 8.13 -51.93 -0.42 0.25 16 27 H 0.00 0.06 7.45 -51.93 -0.39 -0.33 16 28 H 0.09 2.34 6.07 -51.93 -0.32 2.03 16 29 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.33 6.69 7.86 -39.29 -0.31 6.38 16 31 H 0.08 1.20 8.06 -51.93 -0.42 0.79 16 32 H 0.02 0.34 7.44 -51.93 -0.39 -0.05 16 33 H 0.37 3.88 9.05 45.56 0.41 4.29 16 34 H 0.07 0.72 7.65 -51.93 -0.40 0.32 16 35 H 0.07 0.60 7.67 -51.93 -0.40 0.21 16 36 H 0.14 1.05 6.30 -52.48 -0.33 0.72 16 37 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 38 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 39 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 347.00 15.07 5.23 5.23 Total: -1.00 -29.86 347.00 -9.70 -39.56 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -4.59 Total: 7.42 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: -2.23 Total: -14.51 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: -0.05 Total: -39.27 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: -0.75 Total: -12.11 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 35 Polarization: -0.39 SS G_CDS: -2.29 Total: -2.69 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.86 -9.70 -39.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772046607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.755 kcal (2) G-P(sol) polarization free energy of solvation -29.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds