Wall clock time and date at job start Wed Apr 1 2020 01:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99764 * 2 1 4 4 H 1.48501 * 109.46785 * 269.99647 * 3 2 1 5 5 H 1.48497 * 109.47405 * 29.99549 * 3 2 1 6 6 H 1.48499 * 109.46988 * 149.99966 * 3 2 1 7 7 C 1.37871 * 120.00109 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00016 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00010 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.46894 * 60.00467 * 9 7 2 11 11 N 1.46503 * 109.46851 * 180.02562 * 9 7 2 12 12 C 1.34779 * 119.99701 * 205.00226 * 11 9 7 13 13 O 1.21285 * 120.00182 * 0.02562 * 12 11 9 14 14 C 1.50702 * 119.99870 * 180.02562 * 12 11 9 15 15 H 1.09006 * 109.50178 * 305.07379 * 14 12 11 16 16 C 1.52900 * 109.50053 * 65.18557 * 14 12 11 17 17 C 1.50594 * 110.32687 * 169.78749 * 16 14 12 18 18 C 1.38088 * 119.91032 * 158.88049 * 17 16 14 19 19 C 1.38318 * 120.14436 * 179.84987 * 18 17 16 20 20 C 1.38392 * 120.46821 * 359.97438 * 19 18 17 21 21 C 1.38034 * 120.04266 * 0.07637 * 20 19 18 22 22 C 1.39400 * 119.65300 * 359.97438 * 21 20 19 23 23 C 1.48131 * 120.38393 * 179.78756 * 22 21 20 24 24 O 1.21476 * 121.45103 * 350.52951 * 23 22 21 25 25 O 1.35752 * 117.10061 * 170.47966 * 23 22 21 26 26 C 1.52993 * 109.47388 * 300.00356 * 9 7 2 27 27 F 1.39899 * 109.47387 * 299.99939 * 26 9 7 28 28 F 1.39895 * 109.47121 * 60.00003 * 26 9 7 29 29 F 1.39901 * 109.47235 * 179.97438 * 26 9 7 30 30 H 0.97009 * 120.00125 * 0.02562 * 1 2 3 31 31 H 0.96995 * 120.00037 * 25.00189 * 11 9 7 32 32 H 1.08992 * 109.33243 * 290.05033 * 16 14 12 33 33 H 1.09004 * 109.32873 * 49.53110 * 16 14 12 34 34 H 1.08004 * 119.92651 * 359.82485 * 18 17 16 35 35 H 1.07999 * 119.77160 * 180.02562 * 19 18 17 36 36 H 1.07995 * 119.97951 * 180.09963 * 20 19 18 37 37 H 1.07995 * 120.16895 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 1 0.6241 -2.5574 -0.8881 11 7 2.2031 -3.6126 0.0027 12 6 1.8370 -4.8126 -0.4896 13 8 0.7195 -4.9706 -0.9338 14 6 2.8162 -5.9582 -0.4880 15 1 3.7298 -5.6567 -1.0006 16 6 3.1436 -6.3478 0.9538 17 6 3.9179 -7.6391 0.9837 18 6 4.6838 -7.9573 2.0878 19 6 5.3944 -9.1435 2.1218 20 6 5.3453 -10.0218 1.0534 21 6 4.5849 -9.7168 -0.0575 22 6 3.8682 -8.5218 -0.0958 23 6 3.0506 -8.1761 -1.2817 24 8 3.1136 -8.8258 -2.3062 25 8 2.2271 -7.1023 -1.1735 26 6 0.3718 -2.5793 1.2512 27 9 1.1764 -2.5045 2.3932 28 9 -0.5373 -1.5161 1.2508 29 9 -0.3281 -3.7907 1.2520 30 1 -0.4851 0.8401 -0.0004 31 1 3.0969 -3.4861 0.3576 32 1 3.7390 -5.5595 1.4142 33 1 2.2166 -6.4701 1.5139 34 1 4.7284 -7.2782 2.9265 35 1 5.9912 -9.3865 2.9885 36 1 5.9020 -10.9465 1.0890 37 1 4.5454 -10.4005 -0.8925 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928811199.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:36:57 Heat of formation + Delta-G solvation = -221.473522 kcal Electronic energy + Delta-G solvation = -30505.819626 eV Core-core repulsion = 25606.176310 eV Total energy + Delta-G solvation = -4899.643316 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.45580 -46.11240 -45.71063 -41.21750 -39.23919 -38.62336 -37.13834 -34.84006 -33.57797 -32.63487 -31.53741 -30.37541 -28.19981 -25.26411 -24.63056 -24.56091 -22.17340 -21.90088 -20.48676 -19.89096 -18.42226 -18.01108 -17.02478 -16.94808 -16.79188 -16.70344 -16.25464 -15.74888 -15.60230 -15.28336 -14.94347 -14.74772 -14.42681 -14.30356 -14.14637 -13.55881 -13.19209 -13.11277 -13.01072 -12.62213 -12.57094 -12.50560 -12.38177 -12.29589 -12.11608 -11.98288 -11.89884 -11.53916 -11.28369 -10.95886 -10.92106 -10.88229 -10.49774 -10.35977 -9.79281 -9.43367 -9.36291 -9.15969 -8.82433 -8.47520 -6.32630 -4.57848 0.31481 0.92293 1.98956 2.71551 2.83526 3.13381 3.20049 3.22442 3.35444 3.56830 3.94270 4.11846 4.20899 4.24614 4.44508 4.51602 4.63798 4.70437 4.84417 4.88592 4.97130 5.06861 5.16668 5.33440 5.51715 5.64130 5.71798 5.75713 5.86540 5.93249 6.02167 6.08341 6.44267 6.71981 6.79325 6.95907 7.25265 7.32960 7.53109 8.05372 8.37673 8.60740 9.10521 10.58951 Molecular weight = 343.09amu Principal moments of inertia in cm(-1) A = 0.018181 B = 0.003149 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.664885 B = 8889.851556 C = 9069.557002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.066 3.934 3 Si 0.917 3.083 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.555 4.555 8 H 0.079 0.921 9 C 0.246 3.754 10 H 0.088 0.912 11 N -0.704 5.704 12 C 0.512 3.488 13 O -0.502 6.502 14 C 0.086 3.914 15 H 0.108 0.892 16 C -0.115 4.115 17 C -0.032 4.032 18 C -0.125 4.125 19 C -0.081 4.081 20 C -0.136 4.136 21 C -0.049 4.049 22 C -0.175 4.175 23 C 0.528 3.472 24 O -0.447 6.447 25 O -0.328 6.328 26 C 0.417 3.583 27 F -0.209 7.209 28 F -0.135 7.135 29 F -0.217 7.217 30 H 0.270 0.730 31 H 0.400 0.600 32 H 0.113 0.887 33 H 0.108 0.892 34 H 0.136 0.864 35 H 0.131 0.869 36 H 0.132 0.868 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.010 -13.034 5.686 18.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.144 4.144 3 Si 0.743 3.257 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.591 4.591 8 H 0.097 0.903 9 C 0.141 3.859 10 H 0.106 0.894 11 N -0.356 5.356 12 C 0.294 3.706 13 O -0.375 6.375 14 C 0.027 3.973 15 H 0.125 0.875 16 C -0.152 4.152 17 C -0.032 4.032 18 C -0.143 4.143 19 C -0.099 4.099 20 C -0.154 4.154 21 C -0.068 4.068 22 C -0.177 4.177 23 C 0.370 3.630 24 O -0.329 6.329 25 O -0.245 6.245 26 C 0.360 3.640 27 F -0.190 7.190 28 F -0.116 7.116 29 F -0.199 7.199 30 H 0.080 0.920 31 H 0.234 0.766 32 H 0.131 0.869 33 H 0.126 0.874 34 H 0.154 0.846 35 H 0.149 0.851 36 H 0.150 0.850 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 10.784 -13.306 4.794 17.785 hybrid contribution 0.748 0.826 0.653 1.291 sum 11.531 -12.480 5.447 17.843 Atomic orbital electron populations 1.70391 1.05896 1.27582 1.43172 1.25082 0.95168 1.00188 0.93926 0.86188 0.79550 0.81530 0.78443 1.20133 1.20755 1.19478 1.20841 0.93809 0.87880 1.56613 0.90279 1.19812 0.88626 0.85389 0.92032 0.89405 1.45950 1.17562 1.09853 1.62204 1.19690 0.88051 0.83246 0.79606 1.90788 1.20298 1.82301 1.44134 1.22696 0.96740 0.84859 0.92970 0.87475 1.21159 1.02273 0.95684 0.96128 1.19941 0.95136 0.94888 0.93229 1.21062 0.97452 0.97925 0.97874 1.21422 0.96988 0.93284 0.98229 1.21212 1.00100 1.00363 0.93676 1.21273 0.92700 0.94604 0.98181 1.20135 1.03545 0.98066 0.95927 1.20991 0.76043 0.79881 0.86121 1.90802 1.59446 1.51441 1.31244 1.87126 1.39532 1.23163 1.74725 1.23117 0.80915 0.72903 0.87020 1.92989 1.74360 1.96186 1.55512 1.93413 1.68307 1.53731 1.96170 1.93081 1.81476 1.48393 1.96967 0.91956 0.76563 0.86906 0.87355 0.84612 0.85128 0.84989 0.84388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.13 9.50 55.43 0.53 -21.60 16 2 C 0.07 1.63 5.20 -17.82 -0.09 1.54 16 3 Si 0.92 19.21 29.54 -169.99 -5.02 14.19 16 4 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 6 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 7 C -0.55 -13.25 8.46 -34.44 -0.29 -13.54 16 8 H 0.08 1.75 7.74 -52.48 -0.41 1.35 16 9 C 0.25 5.72 2.21 -69.08 -0.15 5.57 16 10 H 0.09 2.32 7.58 -51.93 -0.39 1.93 16 11 N -0.70 -12.84 4.95 -54.93 -0.27 -13.11 16 12 C 0.51 9.44 6.69 -10.98 -0.07 9.37 16 13 O -0.50 -11.71 15.09 -13.98 -0.21 -11.92 16 14 C 0.09 1.21 3.16 -27.93 -0.09 1.12 16 15 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 16 C -0.12 -1.25 5.30 -27.99 -0.15 -1.40 16 17 C -0.03 -0.32 5.80 -104.25 -0.60 -0.93 16 18 C -0.13 -1.00 9.71 -39.61 -0.38 -1.38 16 19 C -0.08 -0.56 10.03 -39.49 -0.40 -0.95 16 20 C -0.14 -1.00 10.04 -39.60 -0.40 -1.40 16 21 C -0.05 -0.48 9.64 -39.22 -0.38 -0.86 16 22 C -0.18 -2.08 5.83 -104.92 -0.61 -2.69 16 23 C 0.53 8.05 7.83 34.79 0.27 8.32 16 24 O -0.45 -7.74 17.40 -19.09 -0.33 -8.07 16 25 O -0.33 -5.57 9.87 -50.17 -0.50 -6.07 16 26 C 0.42 10.07 2.81 37.15 0.10 10.17 16 27 F -0.21 -4.73 16.94 2.25 0.04 -4.69 16 28 F -0.14 -3.59 12.91 2.25 0.03 -3.56 16 29 F -0.22 -5.24 15.68 2.25 0.04 -5.20 16 30 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 31 H 0.40 5.84 8.54 -40.82 -0.35 5.49 16 32 H 0.11 0.90 8.13 -51.93 -0.42 0.48 16 33 H 0.11 1.28 8.10 -51.93 -0.42 0.86 16 34 H 0.14 0.80 8.06 -52.48 -0.42 0.38 16 35 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 36 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 37 H 0.14 1.26 7.77 -52.49 -0.41 0.85 16 LS Contribution 334.38 15.07 5.04 5.04 Total: -1.00 -32.05 334.38 -7.13 -39.18 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -3.22 Total: 2.87 kcal Atomic # 6 Polarization: 16.18 SS G_CDS: -3.24 Total: 12.94 kcal Atomic # 7 Polarization: -34.96 SS G_CDS: 0.25 Total: -34.71 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: -1.04 Total: -26.06 kcal Atomic # 9 Polarization: -13.56 SS G_CDS: 0.10 Total: -13.46 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.02 Total: 14.19 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.05 -7.13 -39.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928811199.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -182.289 kcal (2) G-P(sol) polarization free energy of solvation -32.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -221.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds