Wall clock time and date at job start Wed Apr 1 2020 01:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31570 * 1 3 3 Si 1.86804 * 119.99937 * 2 1 4 4 H 1.48501 * 109.47205 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47143 * 300.00252 * 3 2 1 6 6 H 1.48497 * 109.46939 * 60.00037 * 3 2 1 7 7 C 1.38638 * 120.00011 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99992 * 179.97438 * 7 2 1 9 9 O 1.34798 * 119.99908 * 359.97438 * 7 2 1 10 10 C 1.35771 * 117.00251 * 174.95551 * 9 7 2 11 11 C 1.38742 * 120.08720 * 5.42959 * 10 9 7 12 12 C 1.38342 * 119.98179 * 179.97438 * 11 10 9 13 13 F 1.35104 * 119.92189 * 180.02562 * 12 11 10 14 14 C 1.38565 * 120.15884 * 0.02562 * 12 11 10 15 15 C 1.38174 * 120.17816 * 359.67943 * 14 12 11 16 16 C 1.38740 * 120.01801 * 0.60074 * 15 14 12 17 17 N 1.39972 * 120.07874 * 179.69440 * 16 15 14 18 18 C 1.34781 * 119.99872 * 34.59639 * 17 16 15 19 19 O 1.21538 * 120.00233 * 355.89700 * 18 17 16 20 20 C 1.48074 * 119.99689 * 175.90486 * 18 17 16 21 21 C 1.39849 * 119.37519 * 179.97438 * 20 18 17 22 22 C 1.36950 * 119.60735 * 179.97438 * 21 20 18 23 23 C 1.39825 * 118.25820 * 359.97438 * 22 21 20 24 24 N 1.34648 * 135.00158 * 180.02562 * 23 22 21 25 25 N 1.28667 * 109.15680 * 179.97438 * 24 23 22 26 26 N 1.28765 * 111.84776 * 0.02562 * 25 24 23 27 27 H 0.96997 * 125.85698 * 180.02562 * 26 25 24 28 28 C 1.37244 * 108.28043 * 359.97438 * 26 25 24 29 29 N 1.31969 * 134.70366 * 180.30477 * 28 26 25 30 30 H 0.96998 * 120.00083 * 359.97438 * 1 2 3 31 31 H 1.08003 * 120.00628 * 359.95428 * 11 10 9 32 32 H 1.08000 * 119.90972 * 180.02562 * 14 12 11 33 33 H 1.08000 * 119.98901 * 180.31799 * 15 14 12 34 34 H 0.97002 * 120.00430 * 214.85837 * 17 16 15 35 35 H 1.08002 * 120.19169 * 359.97438 * 21 20 18 36 36 H 1.08001 * 120.87262 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.7097 1.3465 -0.0006 5 1 1.8909 2.3965 -1.2125 6 1 1.8909 2.3964 1.2125 7 6 2.0089 -1.2006 -0.0005 8 1 3.0890 -1.2006 -0.0010 9 8 1.3349 -2.3680 -0.0005 10 6 2.0702 -3.5044 -0.1074 11 6 3.4560 -3.4396 -0.0970 12 6 4.2031 -4.5989 -0.2056 13 9 5.5526 -4.5345 -0.1947 14 6 3.5707 -5.8260 -0.3253 15 6 2.1909 -5.8987 -0.3303 16 6 1.4344 -4.7402 -0.2278 17 7 0.0366 -4.8118 -0.2392 18 6 -0.5890 -5.8619 0.3288 19 8 0.0606 -6.7824 0.7846 20 6 -2.0678 -5.8940 0.3974 21 6 -2.7035 -6.9901 0.9891 22 6 -4.0710 -7.0245 1.0555 23 6 -4.7869 -5.9481 0.5227 24 7 -6.0916 -5.6360 0.4076 25 7 -6.2030 -4.4963 -0.1791 26 7 -5.0545 -3.9976 -0.4794 27 1 -4.9021 -3.1493 -0.9243 28 6 -4.0828 -4.8719 -0.0608 29 7 -2.7637 -4.8810 -0.0981 30 1 -0.4850 0.8400 0.0004 31 1 3.9514 -2.4844 -0.0045 32 1 4.1579 -6.7285 -0.4094 33 1 1.7011 -6.8572 -0.4187 34 1 -0.4818 -4.1077 -0.6591 35 1 -2.1194 -7.8047 1.3912 36 1 -4.5830 -7.8607 1.5083 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001294989244.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:36:33 Heat of formation + Delta-G solvation = 58.477618 kcal Electronic energy + Delta-G solvation = -28269.548668 eV Core-core repulsion = 23865.026881 eV Total energy + Delta-G solvation = -4404.521786 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 343.087 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.33214 -43.62154 -40.56189 -39.31811 -38.25173 -36.40477 -34.65899 -34.18607 -32.49741 -32.07732 -31.28526 -29.53257 -28.50217 -25.93830 -25.53194 -24.21184 -22.99630 -22.63049 -21.83951 -20.63108 -19.20349 -18.68575 -18.43601 -18.15586 -17.56407 -16.84691 -16.72314 -15.71822 -15.40809 -15.32304 -15.10213 -14.92222 -14.58234 -14.33234 -13.81945 -13.75741 -13.71212 -13.51953 -13.27292 -13.11848 -12.62905 -12.43311 -12.27867 -12.04533 -11.92784 -11.74172 -11.45459 -11.06078 -10.83935 -10.58073 -10.31039 -9.86947 -9.81579 -9.53289 -9.52208 -9.33075 -9.04333 -7.99130 -7.24439 -6.67851 -4.25894 -0.15270 0.70096 1.64296 1.89172 1.92104 2.03301 2.67622 3.00633 3.03023 3.08362 3.11204 3.47650 3.53946 3.78352 3.96305 4.10434 4.24657 4.49480 4.59475 4.76537 4.88473 5.02523 5.08038 5.16392 5.44539 5.49149 5.59891 5.66702 5.93133 5.98019 6.09051 6.32347 6.43283 6.65420 6.81870 6.83663 6.88741 7.06807 7.16261 7.52588 7.71794 7.76629 7.84800 8.26770 8.77607 9.37589 10.48496 Molecular weight = 343.09amu Principal moments of inertia in cm(-1) A = 0.009384 B = 0.003747 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2983.088788 B = 7470.478317 C =10291.666344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.044 3.956 3 Si 0.943 3.057 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.393 4.393 8 H 0.096 0.904 9 O -0.164 6.164 10 C 0.163 3.837 11 C -0.259 4.259 12 C 0.136 3.864 13 F -0.150 7.150 14 C -0.231 4.231 15 C -0.045 4.045 16 C 0.048 3.952 17 N -0.620 5.620 18 C 0.565 3.435 19 O -0.520 6.520 20 C 0.156 3.844 21 C -0.120 4.120 22 C -0.005 4.005 23 C -0.025 4.025 24 N -0.242 5.242 25 N 0.009 4.991 26 N -0.398 5.398 27 H 0.462 0.538 28 C 0.220 3.780 29 N -0.436 5.436 30 H 0.272 0.728 31 H 0.144 0.856 32 H 0.125 0.875 33 H 0.143 0.857 34 H 0.425 0.575 35 H 0.168 0.832 36 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.093 -9.623 -1.022 11.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.161 4.161 3 Si 0.767 3.233 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.469 4.469 8 H 0.114 0.886 9 O -0.066 6.066 10 C 0.106 3.894 11 C -0.280 4.280 12 C 0.116 3.884 13 F -0.129 7.129 14 C -0.251 4.251 15 C -0.065 4.065 16 C -0.046 4.046 17 N -0.264 5.264 18 C 0.350 3.650 19 O -0.396 6.396 20 C 0.001 3.999 21 C -0.144 4.144 22 C -0.035 4.035 23 C -0.153 4.153 24 N -0.119 5.119 25 N 0.026 4.974 26 N -0.130 5.130 27 H 0.311 0.689 28 C -0.025 4.025 29 N -0.152 5.152 30 H 0.081 0.919 31 H 0.162 0.838 32 H 0.143 0.857 33 H 0.161 0.839 34 H 0.263 0.737 35 H 0.186 0.814 36 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -7.225 -9.113 -1.082 11.680 hybrid contribution 1.230 1.274 -0.085 1.773 sum -5.995 -7.840 -1.167 9.938 Atomic orbital electron populations 1.70030 1.05971 1.27928 1.44970 1.25304 0.95909 0.98907 0.96028 0.85612 0.79344 0.79962 0.78403 1.18858 1.19969 1.20001 1.21432 0.92068 0.80331 1.53061 0.88631 1.83943 1.34004 1.11339 1.77332 1.18806 0.89494 0.87205 0.93886 1.20866 0.93374 0.98548 1.15235 1.17489 0.75979 0.94323 1.00617 1.91422 1.30089 1.97373 1.93985 1.20481 0.94552 0.95914 1.14190 1.20649 0.92292 0.97183 0.96382 1.16857 0.81709 0.91883 1.14191 1.42934 1.05428 1.24047 1.53981 1.17666 0.85134 0.83309 0.78916 1.90776 1.64932 1.36127 1.47759 1.21188 0.93909 0.89677 0.95082 1.21738 0.94221 0.99401 0.99003 1.20486 0.92479 0.95784 0.94784 1.20689 0.91713 0.98077 1.04796 1.75398 1.15679 1.05721 1.15120 1.78094 1.05257 1.04970 1.09072 1.44733 1.02434 1.20222 1.45612 0.68907 1.19773 0.89860 0.91523 1.01340 1.66331 1.04593 1.26695 1.17580 0.91855 0.83831 0.85732 0.83945 0.73679 0.81428 0.82268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.84 13.67 55.48 0.76 -22.08 16 2 C 0.04 1.12 5.49 -17.52 -0.10 1.02 16 3 Si 0.94 19.23 29.55 -169.99 -5.02 14.21 16 4 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 5 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 6 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.39 -10.10 9.49 30.88 0.29 -9.81 16 8 H 0.10 2.30 5.20 -52.48 -0.27 2.03 16 9 O -0.16 -4.18 9.32 0.08 0.00 -4.18 16 10 C 0.16 3.62 6.67 -38.93 -0.26 3.36 16 11 C -0.26 -5.44 9.14 -39.36 -0.36 -5.80 16 12 C 0.14 2.58 7.29 -39.42 -0.29 2.29 16 13 F -0.15 -2.74 17.26 2.25 0.04 -2.70 16 14 C -0.23 -4.02 10.02 -39.48 -0.40 -4.42 16 15 C -0.04 -0.80 8.69 -39.42 -0.34 -1.15 16 16 C 0.05 0.95 6.32 -83.48 -0.53 0.42 16 17 N -0.62 -11.25 5.17 -10.51 -0.05 -11.30 16 18 C 0.56 9.23 7.65 -12.22 -0.09 9.14 16 19 O -0.52 -8.99 13.71 5.33 0.07 -8.91 16 20 C 0.16 2.18 6.74 -82.94 -0.56 1.62 16 21 C -0.12 -1.28 9.55 -39.45 -0.38 -1.66 16 22 C 0.00 -0.04 10.16 -39.45 -0.40 -0.45 16 23 C -0.03 -0.31 7.38 -84.91 -0.63 -0.94 16 24 N -0.24 -3.15 12.43 32.12 0.40 -2.75 16 25 N 0.01 0.12 13.28 60.35 0.80 0.92 16 26 N -0.40 -4.46 7.06 31.13 0.22 -4.24 16 27 H 0.46 3.82 8.96 -190.26 -1.71 2.12 16 28 C 0.22 2.91 8.56 -156.28 -1.34 1.57 16 29 N -0.44 -6.32 9.55 -8.91 -0.09 -6.41 16 30 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 31 H 0.14 3.02 5.64 -52.48 -0.30 2.72 16 32 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 33 H 0.14 2.38 6.20 -52.49 -0.33 2.05 16 34 H 0.42 7.81 7.89 -40.82 -0.32 7.49 16 35 H 0.17 1.47 7.61 -52.49 -0.40 1.07 16 36 H 0.16 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 331.40 15.07 4.99 4.99 Total: -1.00 -29.93 331.40 -6.55 -36.48 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -3.30 Total: 10.76 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: -5.37 Total: -4.79 kcal Atomic # 7 Polarization: -47.90 SS G_CDS: 2.04 Total: -45.87 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: 0.07 Total: -13.09 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.04 Total: -2.70 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.02 Total: 14.21 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.93 -6.55 -36.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001294989244.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.962 kcal (2) G-P(sol) polarization free energy of solvation -29.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds