Wall clock time and date at job start Wed Apr 1 2020 01:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31570 * 1 3 3 Si 1.86804 * 119.99937 * 2 1 4 4 H 1.48501 * 109.47205 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47143 * 300.00252 * 3 2 1 6 6 H 1.48497 * 109.46939 * 60.00037 * 3 2 1 7 7 C 1.38638 * 120.00011 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99992 * 179.97438 * 7 2 1 9 9 O 1.34798 * 119.99908 * 359.97438 * 7 2 1 10 10 C 1.35771 * 117.00251 * 174.95551 * 9 7 2 11 11 C 1.38742 * 120.08720 * 5.42959 * 10 9 7 12 12 C 1.38342 * 119.98179 * 179.97438 * 11 10 9 13 13 F 1.35104 * 119.92189 * 180.02562 * 12 11 10 14 14 C 1.38565 * 120.15884 * 0.02562 * 12 11 10 15 15 C 1.38174 * 120.17816 * 359.67943 * 14 12 11 16 16 C 1.38740 * 120.01801 * 0.60074 * 15 14 12 17 17 N 1.39972 * 120.07874 * 179.69440 * 16 15 14 18 18 C 1.34781 * 119.99872 * 34.59639 * 17 16 15 19 19 O 1.21538 * 120.00233 * 355.89700 * 18 17 16 20 20 C 1.48074 * 119.99689 * 175.90486 * 18 17 16 21 21 C 1.39849 * 119.37519 * 179.97438 * 20 18 17 22 22 C 1.36950 * 119.60735 * 179.97438 * 21 20 18 23 23 C 1.39825 * 118.25820 * 359.97438 * 22 21 20 24 24 N 1.34648 * 135.00158 * 180.02562 * 23 22 21 25 25 N 1.28667 * 109.15680 * 179.97438 * 24 23 22 26 26 N 1.28765 * 111.84776 * 0.02562 * 25 24 23 27 27 H 0.96997 * 125.85698 * 180.02562 * 26 25 24 28 28 C 1.37244 * 108.28043 * 359.97438 * 26 25 24 29 29 N 1.31969 * 134.70366 * 180.30477 * 28 26 25 30 30 H 0.96998 * 120.00083 * 359.97438 * 1 2 3 31 31 H 1.08003 * 120.00628 * 359.95428 * 11 10 9 32 32 H 1.08000 * 119.90972 * 180.02562 * 14 12 11 33 33 H 1.08000 * 119.98901 * 180.31799 * 15 14 12 34 34 H 0.97002 * 120.00430 * 214.85837 * 17 16 15 35 35 H 1.08002 * 120.19169 * 359.97438 * 21 20 18 36 36 H 1.08001 * 120.87262 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.7097 1.3465 -0.0006 5 1 1.8909 2.3965 -1.2125 6 1 1.8909 2.3964 1.2125 7 6 2.0089 -1.2006 -0.0005 8 1 3.0890 -1.2006 -0.0010 9 8 1.3349 -2.3680 -0.0005 10 6 2.0702 -3.5044 -0.1074 11 6 3.4560 -3.4396 -0.0970 12 6 4.2031 -4.5989 -0.2056 13 9 5.5526 -4.5345 -0.1947 14 6 3.5707 -5.8260 -0.3253 15 6 2.1909 -5.8987 -0.3303 16 6 1.4344 -4.7402 -0.2278 17 7 0.0366 -4.8118 -0.2392 18 6 -0.5890 -5.8619 0.3288 19 8 0.0606 -6.7824 0.7846 20 6 -2.0678 -5.8940 0.3974 21 6 -2.7035 -6.9901 0.9891 22 6 -4.0710 -7.0245 1.0555 23 6 -4.7869 -5.9481 0.5227 24 7 -6.0916 -5.6360 0.4076 25 7 -6.2030 -4.4963 -0.1791 26 7 -5.0545 -3.9976 -0.4794 27 1 -4.9021 -3.1493 -0.9243 28 6 -4.0828 -4.8719 -0.0608 29 7 -2.7637 -4.8810 -0.0981 30 1 -0.4850 0.8400 0.0004 31 1 3.9514 -2.4844 -0.0045 32 1 4.1579 -6.7285 -0.4094 33 1 1.7011 -6.8572 -0.4187 34 1 -0.4818 -4.1077 -0.6591 35 1 -2.1194 -7.8047 1.3912 36 1 -4.5830 -7.8607 1.5083 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001294989244.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:36:32 Heat of formation + Delta-G solvation = 38.162643 kcal Electronic energy + Delta-G solvation = -28270.429591 eV Core-core repulsion = 23865.026881 eV Total energy + Delta-G solvation = -4405.402710 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 343.087 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.83719 -44.57173 -41.90005 -40.70218 -39.55748 -38.00573 -35.84330 -35.35853 -34.33758 -33.02358 -32.32746 -31.10876 -29.99273 -27.48888 -26.90091 -25.19647 -24.17889 -23.89149 -23.33276 -21.97048 -20.26743 -20.16322 -19.71418 -19.46978 -18.99034 -18.18427 -17.81254 -17.16389 -16.96847 -16.68192 -16.45057 -16.24116 -15.99598 -15.83355 -15.44475 -15.28568 -14.98666 -14.60896 -14.42340 -14.30086 -14.03541 -13.77022 -13.59726 -13.45232 -13.05979 -13.00241 -12.84586 -12.62168 -12.36407 -12.14577 -11.71346 -11.51583 -11.16129 -10.85962 -10.75579 -10.46645 -10.29027 -9.58622 -8.83360 -8.53121 -6.19724 -1.14530 -0.20232 0.15406 0.45268 0.85587 0.97349 1.35635 1.41126 1.51618 1.52132 1.85548 2.12120 2.45321 2.52223 2.66156 2.95540 3.03221 3.14803 3.17039 3.43408 3.48312 3.64615 3.93341 4.15221 4.18645 4.24292 4.33657 4.55619 4.70245 4.72932 4.90991 4.99426 5.15927 5.21314 5.28202 5.33160 5.40868 5.50642 5.90376 5.97799 6.11248 6.37297 6.85919 6.89846 6.91993 7.59839 8.67062 Molecular weight = 343.09amu Principal moments of inertia in cm(-1) A = 0.009384 B = 0.003747 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2983.088788 B = 7470.478317 C =10291.666344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C -0.008 4.008 3 Si 1.011 2.989 4 H -0.255 1.255 5 H -0.268 1.268 6 H -0.270 1.270 7 C -0.416 4.416 8 H 0.101 0.899 9 O -0.202 6.202 10 C 0.135 3.865 11 C -0.266 4.266 12 C 0.129 3.871 13 F -0.144 7.144 14 C -0.202 4.202 15 C -0.044 4.044 16 C 0.049 3.951 17 N -0.631 5.631 18 C 0.570 3.430 19 O -0.528 6.528 20 C 0.140 3.860 21 C -0.109 4.109 22 C 0.016 3.984 23 C -0.030 4.030 24 N -0.254 5.254 25 N 0.009 4.991 26 N -0.389 5.389 27 H 0.471 0.529 28 C 0.201 3.799 29 N -0.461 5.461 30 H 0.274 0.726 31 H 0.136 0.864 32 H 0.163 0.837 33 H 0.162 0.838 34 H 0.420 0.580 35 H 0.192 0.808 36 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.721 -11.861 -0.667 13.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.208 4.208 3 Si 0.831 3.169 4 H -0.179 1.179 5 H -0.193 1.193 6 H -0.196 1.196 7 C -0.491 4.491 8 H 0.118 0.882 9 O -0.107 6.107 10 C 0.081 3.919 11 C -0.287 4.287 12 C 0.109 3.891 13 F -0.122 7.122 14 C -0.222 4.222 15 C -0.064 4.064 16 C -0.045 4.045 17 N -0.274 5.274 18 C 0.356 3.644 19 O -0.404 6.404 20 C -0.014 4.014 21 C -0.133 4.133 22 C -0.015 4.015 23 C -0.158 4.158 24 N -0.131 5.131 25 N 0.026 4.974 26 N -0.123 5.123 27 H 0.322 0.678 28 C -0.044 4.044 29 N -0.177 5.177 30 H 0.083 0.917 31 H 0.153 0.847 32 H 0.181 0.819 33 H 0.180 0.820 34 H 0.258 0.742 35 H 0.209 0.791 36 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -6.830 -11.398 -0.731 13.307 hybrid contribution 1.133 1.682 -0.213 2.039 sum -5.696 -9.716 -0.944 11.302 Atomic orbital electron populations 1.70144 1.07578 1.28816 1.47468 1.26382 0.96800 1.02128 0.95507 0.84623 0.78352 0.75373 0.78553 1.17856 1.19251 1.19557 1.21806 0.92557 0.81082 1.53678 0.88177 1.83927 1.34841 1.11949 1.80002 1.19214 0.90219 0.87406 0.95068 1.20932 0.93244 0.99233 1.15278 1.17508 0.76246 0.94270 1.01093 1.91439 1.29478 1.97353 1.93952 1.20919 0.94506 0.96508 1.10281 1.20923 0.92542 0.97110 0.95780 1.17173 0.82887 0.91675 1.12774 1.43043 1.04855 1.24700 1.54815 1.17998 0.86299 0.82313 0.77795 1.90745 1.65626 1.36170 1.47845 1.21008 0.92491 0.91073 0.96815 1.21948 0.94722 0.98650 0.97987 1.20957 0.91867 0.95757 0.92901 1.21092 0.91455 0.98580 1.04685 1.75384 1.15985 1.06030 1.15690 1.78050 1.05448 1.04982 1.08951 1.44788 1.01914 1.20423 1.45137 0.67779 1.19946 0.89695 0.92504 1.02262 1.66176 1.05449 1.27559 1.18560 0.91709 0.84687 0.81922 0.82048 0.74211 0.79056 0.78044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.54 13.67 21.61 0.30 -50.24 16 2 C -0.01 -0.44 5.49 84.83 0.47 0.03 16 3 Si 1.01 40.36 29.55 68.60 2.03 42.39 16 4 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 5 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 6 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 7 C -0.42 -22.32 9.49 67.92 0.64 -21.68 16 8 H 0.10 5.04 5.20 -2.91 -0.02 5.03 16 9 O -0.20 -10.87 9.32 -22.65 -0.21 -11.08 16 10 C 0.13 6.18 6.67 22.69 0.15 6.33 16 11 C -0.27 -11.29 9.14 22.42 0.20 -11.09 16 12 C 0.13 4.70 7.29 22.37 0.16 4.86 16 13 F -0.14 -4.97 17.26 44.97 0.78 -4.19 16 14 C -0.20 -6.43 10.02 22.33 0.22 -6.20 16 15 C -0.04 -1.47 8.69 22.37 0.19 -1.28 16 16 C 0.05 1.97 6.32 38.27 0.24 2.21 16 17 N -0.63 -23.28 5.17 -305.44 -1.58 -24.86 16 18 C 0.57 18.28 7.65 86.85 0.66 18.94 16 19 O -0.53 -17.27 13.71 -3.83 -0.05 -17.32 16 20 C 0.14 3.78 6.74 42.04 0.28 4.06 16 21 C -0.11 -2.06 9.55 22.36 0.21 -1.84 16 22 C 0.02 0.25 10.16 22.35 0.23 0.48 16 23 C -0.03 -0.70 7.38 39.83 0.29 -0.41 16 24 N -0.25 -6.26 12.43 -52.29 -0.65 -6.91 16 25 N 0.01 0.22 13.28 37.02 0.49 0.71 16 26 N -0.39 -8.70 7.06 -55.42 -0.39 -9.09 16 27 H 0.47 8.05 8.96 -219.84 -1.97 6.07 16 28 C 0.20 5.26 8.56 134.30 1.15 6.41 16 29 N -0.46 -13.47 9.55 -182.10 -1.74 -15.21 16 30 H 0.27 14.08 8.31 -92.71 -0.77 13.31 16 31 H 0.14 5.86 5.64 -2.91 -0.02 5.85 16 32 H 0.16 3.99 8.06 -2.91 -0.02 3.97 16 33 H 0.16 4.90 6.20 -2.91 -0.02 4.89 16 34 H 0.42 16.30 7.89 -92.71 -0.73 15.56 16 35 H 0.19 2.66 7.61 -2.91 -0.02 2.64 16 36 H 0.20 1.53 8.06 -2.91 -0.02 1.51 16 Total: -1.00 -67.04 331.40 2.62 -64.41 By element: Atomic # 1 Polarization: 32.06 SS G_CDS: -1.47 Total: 30.58 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: 5.12 Total: 0.82 kcal Atomic # 7 Polarization: -102.04 SS G_CDS: -3.57 Total: -105.61 kcal Atomic # 8 Polarization: -28.14 SS G_CDS: -0.26 Total: -28.41 kcal Atomic # 9 Polarization: -4.97 SS G_CDS: 0.78 Total: -4.19 kcal Atomic # 14 Polarization: 40.36 SS G_CDS: 2.03 Total: 42.39 kcal Total: -67.04 2.62 -64.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001294989244.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.577 kcal (2) G-P(sol) polarization free energy of solvation -67.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds