Wall clock time and date at job start Wed Apr 1 2020 02:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52999 * 109.44833 * 2 1 4 4 N 1.46499 * 109.47096 * 299.96211 * 3 2 1 5 5 C 1.34776 * 119.99885 * 179.97438 * 4 3 2 6 6 O 1.21707 * 120.00277 * 0.02562 * 5 4 3 7 7 C 1.46521 * 119.99942 * 179.97438 * 5 4 3 8 8 S 1.76212 * 126.17901 * 0.02685 * 7 5 4 9 9 C 1.70912 * 90.39217 * 179.97438 * 8 7 5 10 10 N 1.29363 * 110.62019 * 359.97438 * 9 8 7 11 11 C 1.31041 * 117.45467 * 359.74923 * 10 9 8 12 12 Cl 1.73595 * 123.05433 * 180.26938 * 11 10 9 13 13 C 1.53046 * 109.46060 * 119.96392 * 2 1 3 14 14 C 1.53187 * 109.31183 * 58.65503 * 13 2 1 15 15 N 1.46927 * 108.77406 * 54.63732 * 14 13 2 16 16 C 1.36943 * 120.63120 * 126.36883 * 15 14 13 17 17 H 1.08000 * 119.99888 * 332.45081 * 16 15 14 18 18 C 1.38811 * 119.99955 * 152.45061 * 16 15 14 19 19 N 1.31614 * 120.00254 * 342.76805 * 18 16 15 20 20 Si 1.86801 * 119.99678 * 162.77313 * 18 16 15 21 21 H 1.48501 * 109.46686 * 269.99566 * 20 18 16 22 22 H 1.48499 * 109.47518 * 29.99570 * 20 18 16 23 23 H 1.48502 * 109.46873 * 149.99729 * 20 18 16 24 24 C 1.46923 * 118.73893 * 306.64252 * 15 14 13 25 25 C 1.52755 * 109.00900 * 53.31139 * 24 15 14 26 26 H 1.09001 * 109.47628 * 300.03375 * 1 2 3 27 27 H 1.09004 * 109.47314 * 60.03802 * 1 2 3 28 28 H 1.09002 * 109.47367 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47428 * 59.96826 * 3 2 1 30 30 H 1.09004 * 109.47208 * 179.97438 * 3 2 1 31 31 H 0.96992 * 119.99940 * 359.97438 * 4 3 2 32 32 H 1.07997 * 124.68712 * 179.97438 * 9 8 7 33 33 H 1.09004 * 109.49497 * 298.70737 * 13 2 1 34 34 H 1.08999 * 109.49861 * 178.60850 * 13 2 1 35 35 H 1.09004 * 109.59162 * 294.84964 * 14 13 2 36 36 H 1.08999 * 109.58850 * 174.42634 * 14 13 2 37 37 H 0.96995 * 120.00322 * 180.02562 * 19 18 16 38 38 H 1.09005 * 109.58782 * 173.14413 * 24 15 14 39 39 H 1.09006 * 109.58879 * 293.56697 * 24 15 14 40 40 H 1.09007 * 109.56573 * 185.55521 * 25 24 15 41 41 H 1.09002 * 109.36461 * 65.49364 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0393 1.4427 0.0000 4 7 1.5515 2.1328 -1.1966 5 6 1.8763 3.4234 -1.4097 6 8 2.5752 4.0154 -0.6083 7 6 1.3888 4.1135 -2.6068 8 16 0.3732 3.4177 -3.8675 9 6 0.3818 4.9041 -4.7111 10 7 1.0815 5.7857 -4.0735 11 6 1.6346 5.4167 -2.9443 12 17 2.5964 6.4824 -1.9683 13 6 2.0398 -0.7207 1.2502 14 6 1.4995 -2.1541 1.2644 15 7 1.8625 -2.8088 0.0001 16 6 2.5269 -4.0063 0.0002 17 1 3.1673 -4.2685 0.8294 18 6 2.3773 -4.8830 -1.0656 19 7 1.3671 -4.7417 -1.8972 20 14 3.6099 -6.2635 -1.3193 21 1 4.7150 -5.7867 -2.1891 22 1 4.1601 -6.6837 -0.0055 23 1 2.9344 -7.4177 -1.9650 24 6 1.5046 -2.1514 -1.2641 25 6 2.0399 -0.7208 -1.2500 26 1 -0.3634 0.5143 0.8897 27 1 -0.3634 0.5133 -0.8903 28 1 -0.3634 -1.0277 0.0005 29 1 1.6754 1.9566 0.8897 30 1 3.1294 1.4431 0.0005 31 1 0.9947 1.6610 -1.8355 32 1 -0.1267 5.0825 -5.6471 33 1 1.6956 -0.1934 2.1399 34 1 3.1295 -0.7428 1.2384 35 1 0.4145 -2.1347 1.3674 36 1 1.9381 -2.7017 2.0986 37 1 1.2623 -5.3546 -2.6417 38 1 1.9465 -2.6972 -2.0978 39 1 0.4200 -2.1318 -1.3715 40 1 1.6958 -0.1935 -2.1398 41 1 3.1296 -0.7428 -1.2381 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484147102.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:50 Heat of formation + Delta-G solvation = 25.797134 kcal Electronic energy + Delta-G solvation = -25518.703944 eV Core-core repulsion = 21780.085696 eV Total energy + Delta-G solvation = -3738.618248 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 343.086 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.50912 -39.64966 -38.39561 -36.81195 -35.15061 -33.27696 -31.31727 -30.62434 -30.00275 -27.34601 -27.08388 -26.11172 -24.10247 -22.57209 -21.90502 -20.73654 -20.42140 -19.36785 -18.07907 -17.37368 -16.44162 -16.26727 -15.85003 -15.24345 -14.98693 -14.89187 -14.84146 -14.21443 -14.01533 -13.83886 -13.52192 -13.44436 -12.88189 -12.69398 -12.51453 -12.10128 -12.01386 -11.52641 -11.35878 -11.29520 -11.23091 -10.81082 -10.75287 -10.59430 -10.51339 -10.25100 -10.22005 -10.08165 -10.05998 -9.84875 -9.57362 -9.46919 -9.31542 -9.06625 -8.47714 -6.69004 -5.82077 -3.23498 -0.31372 0.50074 0.89737 1.80086 1.90205 2.89230 2.94583 3.35822 3.43244 3.43971 3.94586 4.42376 4.47298 4.61536 4.98590 5.05791 5.10154 5.16347 5.37084 5.47732 5.70189 5.78145 5.87484 6.02051 6.03519 6.08733 6.25083 6.30701 6.43165 6.47772 6.54985 6.63989 6.73403 6.82500 6.85346 6.95817 7.28928 7.33716 7.62202 7.77388 7.96925 8.42224 9.18966 9.82444 10.38648 11.26442 Molecular weight = 343.09amu Principal moments of inertia in cm(-1) A = 0.018598 B = 0.002646 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.144250 B =10581.427797 C =11225.393303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.065 4.065 3 C 0.131 3.869 4 N -0.713 5.713 5 C 0.588 3.412 6 O -0.511 6.511 7 C -0.281 4.281 8 S 0.220 5.780 9 C 0.040 3.960 10 N -0.470 5.470 11 C 0.177 3.823 12 Cl 0.029 6.971 13 C -0.120 4.120 14 C 0.146 3.854 15 N -0.591 5.591 16 C -0.251 4.251 17 H 0.065 0.935 18 C 0.002 3.998 19 N -0.903 5.903 20 Si 0.901 3.099 21 H -0.288 1.288 22 H -0.279 1.279 23 H -0.292 1.292 24 C 0.171 3.829 25 C -0.130 4.130 26 H 0.048 0.952 27 H 0.042 0.958 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.399 0.601 32 H 0.215 0.785 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.021 0.979 36 H 0.053 0.947 37 H 0.253 0.747 38 H 0.086 0.914 39 H 0.021 0.979 40 H 0.043 0.957 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.493 18.425 -4.503 19.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.066 4.066 3 C 0.008 3.992 4 N -0.365 5.365 5 C 0.372 3.628 6 O -0.388 6.388 7 C -0.407 4.407 8 S 0.474 5.526 9 C -0.255 4.255 10 N -0.184 5.184 11 C 0.011 3.989 12 Cl 0.058 6.942 13 C -0.159 4.159 14 C 0.020 3.980 15 N -0.314 5.314 16 C -0.381 4.381 17 H 0.083 0.917 18 C -0.196 4.196 19 N -0.548 5.548 20 Si 0.731 3.269 21 H -0.215 1.215 22 H -0.205 1.205 23 H -0.218 1.218 24 C 0.045 3.955 25 C -0.170 4.170 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.235 0.765 32 H 0.232 0.768 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.039 0.961 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.104 0.896 39 H 0.039 0.961 40 H 0.062 0.938 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.383 18.349 -4.413 19.375 hybrid contribution 0.873 -0.160 -0.186 0.907 sum -3.510 18.189 -4.599 19.087 Atomic orbital electron populations 1.21951 0.94650 1.03157 1.00236 1.20721 0.95832 0.91863 0.98140 1.21641 0.99320 0.92296 0.85975 1.45990 1.53327 1.10815 1.26413 1.16518 0.80791 0.81902 0.83603 1.90892 1.36993 1.65841 1.45028 1.25828 1.12051 0.98297 1.04557 1.84244 1.41811 1.14680 1.11898 1.28600 1.00307 0.92205 1.04433 1.65675 1.10992 1.35090 1.06692 1.21134 0.97284 0.88968 0.91466 1.98449 1.66694 1.63574 1.65481 1.21999 1.00837 0.98196 0.94915 1.20914 0.96434 0.90559 0.90132 1.44017 1.66903 1.21025 0.99447 1.19203 1.19318 0.93505 1.06047 0.91713 1.25006 0.97137 0.97531 0.99936 1.70022 1.28025 1.38905 1.17801 0.86309 0.81012 0.81577 0.78001 1.21492 1.20458 1.21802 1.20698 0.96582 0.87732 0.90449 1.22198 1.00813 0.99660 0.94309 0.93243 0.93874 0.90543 0.91394 0.91185 0.76530 0.76835 0.92827 0.92027 0.96098 0.92856 0.93695 0.89611 0.96110 0.93838 0.92414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 7.54 37.15 0.28 -1.69 16 2 C -0.06 -0.96 0.53 -154.47 -0.08 -1.04 16 3 C 0.13 1.76 4.56 -4.04 -0.02 1.75 16 4 N -0.71 -8.89 4.94 -61.67 -0.30 -9.20 16 5 C 0.59 8.03 7.78 -12.92 -0.10 7.93 16 6 O -0.51 -8.40 15.17 5.18 0.08 -8.32 16 7 C -0.28 -3.27 6.52 -36.75 -0.24 -3.51 16 8 S 0.22 1.65 22.35 -107.50 -2.40 -0.75 16 9 C 0.04 0.28 12.20 51.72 0.63 0.91 16 10 N -0.47 -5.01 10.50 -12.22 -0.13 -5.14 16 11 C 0.18 2.17 7.41 -18.39 -0.14 2.03 16 12 Cl 0.03 0.38 27.38 -51.86 -1.42 -1.04 16 13 C -0.12 -1.91 4.91 -26.61 -0.13 -2.04 16 14 C 0.15 2.85 6.05 -3.71 -0.02 2.83 16 15 N -0.59 -13.95 3.00 -172.58 -0.52 -14.47 16 16 C -0.25 -6.66 9.58 -15.06 -0.14 -6.80 16 17 H 0.07 1.70 7.89 -52.49 -0.41 1.29 16 18 C 0.00 0.06 4.91 -17.43 -0.09 -0.02 16 19 N -0.90 -25.24 11.19 55.49 0.62 -24.61 16 20 Si 0.90 21.24 29.59 -169.99 -5.03 16.21 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 C 0.17 3.75 4.82 -3.94 -0.02 3.73 16 25 C -0.13 -2.23 4.73 -26.83 -0.13 -2.36 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.04 0.52 6.86 -51.93 -0.36 0.16 16 28 H 0.08 1.25 4.99 -51.93 -0.26 0.99 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.40 4.41 5.34 -40.82 -0.22 4.19 16 32 H 0.22 0.57 8.06 -52.49 -0.42 0.15 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.02 0.41 6.69 -51.93 -0.35 0.06 16 36 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16 37 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 38 H 0.09 2.17 6.04 -51.93 -0.31 1.85 16 39 H 0.02 0.47 6.70 -51.93 -0.35 0.13 16 40 H 0.04 0.65 6.82 -51.92 -0.35 0.29 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 351.47 15.07 5.30 5.30 Total: -1.00 -31.10 351.47 -9.12 -40.22 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -5.12 Total: 0.10 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -0.19 Total: 1.71 kcal Atomic # 7 Polarization: -53.09 SS G_CDS: -0.33 Total: -53.42 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: 0.08 Total: -8.32 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Atomic # 16 Polarization: 1.65 SS G_CDS: -2.40 Total: -0.75 kcal Atomic # 17 Polarization: 0.38 SS G_CDS: -1.42 Total: -1.04 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.10 -9.12 -40.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484147102.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.017 kcal (2) G-P(sol) polarization free energy of solvation -31.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds