Wall clock time and date at job start Wed Apr 1 2020 02:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52999 * 109.44833 * 2 1 4 4 N 1.46499 * 109.47096 * 299.96211 * 3 2 1 5 5 C 1.34776 * 119.99885 * 179.97438 * 4 3 2 6 6 O 1.21707 * 120.00277 * 0.02562 * 5 4 3 7 7 C 1.46521 * 119.99942 * 179.97438 * 5 4 3 8 8 S 1.76212 * 126.17901 * 0.02685 * 7 5 4 9 9 C 1.70912 * 90.39217 * 179.97438 * 8 7 5 10 10 N 1.29363 * 110.62019 * 359.97438 * 9 8 7 11 11 C 1.31041 * 117.45467 * 359.74923 * 10 9 8 12 12 Cl 1.73595 * 123.05433 * 180.26938 * 11 10 9 13 13 C 1.53046 * 109.46060 * 119.96392 * 2 1 3 14 14 C 1.53187 * 109.31183 * 58.65503 * 13 2 1 15 15 N 1.46927 * 108.77406 * 54.63732 * 14 13 2 16 16 C 1.36943 * 120.63120 * 126.36883 * 15 14 13 17 17 H 1.08000 * 119.99888 * 332.45081 * 16 15 14 18 18 C 1.38811 * 119.99955 * 152.45061 * 16 15 14 19 19 N 1.31614 * 120.00254 * 342.76805 * 18 16 15 20 20 Si 1.86801 * 119.99678 * 162.77313 * 18 16 15 21 21 H 1.48501 * 109.46686 * 269.99566 * 20 18 16 22 22 H 1.48499 * 109.47518 * 29.99570 * 20 18 16 23 23 H 1.48502 * 109.46873 * 149.99729 * 20 18 16 24 24 C 1.46923 * 118.73893 * 306.64252 * 15 14 13 25 25 C 1.52755 * 109.00900 * 53.31139 * 24 15 14 26 26 H 1.09001 * 109.47628 * 300.03375 * 1 2 3 27 27 H 1.09004 * 109.47314 * 60.03802 * 1 2 3 28 28 H 1.09002 * 109.47367 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47428 * 59.96826 * 3 2 1 30 30 H 1.09004 * 109.47208 * 179.97438 * 3 2 1 31 31 H 0.96992 * 119.99940 * 359.97438 * 4 3 2 32 32 H 1.07997 * 124.68712 * 179.97438 * 9 8 7 33 33 H 1.09004 * 109.49497 * 298.70737 * 13 2 1 34 34 H 1.08999 * 109.49861 * 178.60850 * 13 2 1 35 35 H 1.09004 * 109.59162 * 294.84964 * 14 13 2 36 36 H 1.08999 * 109.58850 * 174.42634 * 14 13 2 37 37 H 0.96995 * 120.00322 * 180.02562 * 19 18 16 38 38 H 1.09005 * 109.58782 * 173.14413 * 24 15 14 39 39 H 1.09006 * 109.58879 * 293.56697 * 24 15 14 40 40 H 1.09007 * 109.56573 * 185.55521 * 25 24 15 41 41 H 1.09002 * 109.36461 * 65.49364 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0393 1.4427 0.0000 4 7 1.5515 2.1328 -1.1966 5 6 1.8763 3.4234 -1.4097 6 8 2.5752 4.0154 -0.6083 7 6 1.3888 4.1135 -2.6068 8 16 0.3732 3.4177 -3.8675 9 6 0.3818 4.9041 -4.7111 10 7 1.0815 5.7857 -4.0735 11 6 1.6346 5.4167 -2.9443 12 17 2.5964 6.4824 -1.9683 13 6 2.0398 -0.7207 1.2502 14 6 1.4995 -2.1541 1.2644 15 7 1.8625 -2.8088 0.0001 16 6 2.5269 -4.0063 0.0002 17 1 3.1673 -4.2685 0.8294 18 6 2.3773 -4.8830 -1.0656 19 7 1.3671 -4.7417 -1.8972 20 14 3.6099 -6.2635 -1.3193 21 1 4.7150 -5.7867 -2.1891 22 1 4.1601 -6.6837 -0.0055 23 1 2.9344 -7.4177 -1.9650 24 6 1.5046 -2.1514 -1.2641 25 6 2.0399 -0.7208 -1.2500 26 1 -0.3634 0.5143 0.8897 27 1 -0.3634 0.5133 -0.8903 28 1 -0.3634 -1.0277 0.0005 29 1 1.6754 1.9566 0.8897 30 1 3.1294 1.4431 0.0005 31 1 0.9947 1.6610 -1.8355 32 1 -0.1267 5.0825 -5.6471 33 1 1.6956 -0.1934 2.1399 34 1 3.1295 -0.7428 1.2384 35 1 0.4145 -2.1347 1.3674 36 1 1.9381 -2.7017 2.0986 37 1 1.2623 -5.3546 -2.6417 38 1 1.9465 -2.6972 -2.0978 39 1 0.4200 -2.1318 -1.3715 40 1 1.6958 -0.1935 -2.1398 41 1 3.1296 -0.7428 -1.2381 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484147102.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:49 Heat of formation + Delta-G solvation = 5.562898 kcal Electronic energy + Delta-G solvation = -25519.581366 eV Core-core repulsion = 21780.085696 eV Total energy + Delta-G solvation = -3739.495671 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 343.086 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.42238 -40.67494 -39.65061 -37.68732 -36.61442 -34.74552 -32.82665 -31.69833 -31.57231 -28.76174 -28.15576 -27.06475 -25.71950 -23.98019 -23.15876 -22.13945 -21.27087 -20.22833 -19.59672 -18.42524 -17.97124 -17.26883 -16.80047 -16.77667 -16.17139 -15.91033 -15.69779 -15.54845 -15.45896 -15.02009 -14.92544 -14.86675 -14.43626 -14.06693 -13.44530 -13.28717 -13.14654 -12.95216 -12.89214 -12.66864 -12.56473 -12.32374 -12.22542 -12.16749 -11.88244 -11.77905 -11.46031 -11.39729 -11.11842 -11.04072 -10.89754 -10.83192 -10.46875 -10.19481 -9.95947 -8.60654 -7.84359 -5.27426 -1.04141 -0.21908 0.26260 1.00272 1.14719 1.47069 1.49161 1.56787 1.91921 1.96214 2.53122 3.29348 3.30907 3.67424 3.71686 3.74592 3.86340 3.87047 3.95942 4.42196 4.49421 4.54237 4.62616 4.73143 4.77713 4.84873 4.87771 4.97698 5.10216 5.13613 5.22904 5.32460 5.35496 5.42755 5.51855 5.58460 5.69785 5.88019 6.15491 6.33187 6.43458 6.97932 7.20210 7.92855 8.42541 9.21292 Molecular weight = 343.09amu Principal moments of inertia in cm(-1) A = 0.018598 B = 0.002646 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.144250 B =10581.427797 C =11225.393303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.055 4.055 3 C 0.141 3.859 4 N -0.707 5.707 5 C 0.589 3.411 6 O -0.546 6.546 7 C -0.315 4.315 8 S 0.279 5.721 9 C 0.058 3.942 10 N -0.499 5.499 11 C 0.169 3.831 12 Cl 0.009 6.991 13 C -0.112 4.112 14 C 0.143 3.857 15 N -0.610 5.610 16 C -0.261 4.261 17 H 0.061 0.939 18 C -0.047 4.047 19 N -0.930 5.930 20 Si 0.960 3.040 21 H -0.288 1.288 22 H -0.272 1.272 23 H -0.295 1.295 24 C 0.179 3.821 25 C -0.118 4.118 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.049 0.951 29 H 0.077 0.923 30 H 0.060 0.940 31 H 0.406 0.594 32 H 0.260 0.740 33 H 0.083 0.917 34 H 0.052 0.948 35 H 0.024 0.976 36 H 0.047 0.953 37 H 0.249 0.751 38 H 0.047 0.953 39 H 0.010 0.990 40 H 0.068 0.932 41 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.434 19.473 -5.311 20.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.056 4.056 3 C 0.018 3.982 4 N -0.359 5.359 5 C 0.374 3.626 6 O -0.425 6.425 7 C -0.442 4.442 8 S 0.534 5.466 9 C -0.235 4.235 10 N -0.215 5.215 11 C 0.003 3.997 12 Cl 0.038 6.962 13 C -0.151 4.151 14 C 0.017 3.983 15 N -0.334 5.334 16 C -0.391 4.391 17 H 0.079 0.921 18 C -0.243 4.243 19 N -0.576 5.576 20 Si 0.789 3.211 21 H -0.215 1.215 22 H -0.197 1.197 23 H -0.221 1.221 24 C 0.054 3.946 25 C -0.157 4.157 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.068 0.932 29 H 0.095 0.905 30 H 0.078 0.922 31 H 0.244 0.756 32 H 0.276 0.724 33 H 0.102 0.898 34 H 0.071 0.929 35 H 0.042 0.958 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.028 0.972 40 H 0.086 0.914 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -5.343 19.393 -5.219 20.781 hybrid contribution 1.072 -0.510 0.006 1.187 sum -4.271 18.883 -5.213 20.049 Atomic orbital electron populations 1.21888 0.93449 1.01959 1.02213 1.20589 0.96623 0.92220 0.96164 1.21416 0.98715 0.91187 0.86862 1.45869 1.53234 1.10605 1.26219 1.16743 0.80138 0.81843 0.83865 1.90868 1.38576 1.66574 1.46499 1.25708 1.14298 0.98583 1.05586 1.84048 1.39445 1.13708 1.09388 1.29429 0.97972 0.91307 1.04812 1.65716 1.12596 1.36387 1.06757 1.21252 0.97485 0.88978 0.92030 1.98432 1.67354 1.64238 1.66208 1.21883 1.00209 0.96102 0.96917 1.21049 0.96658 0.92351 0.88208 1.44282 1.67020 1.20768 1.01299 1.19478 1.19215 0.94570 1.05858 0.92123 1.25663 0.98692 0.99843 1.00093 1.70152 1.29458 1.39778 1.18218 0.85379 0.78897 0.78947 0.77900 1.21462 1.19707 1.22144 1.20502 0.95631 0.89818 0.88678 1.22003 0.99731 0.97099 0.96908 0.91385 0.91915 0.93202 0.90506 0.92184 0.75633 0.72411 0.89822 0.92888 0.95819 0.93462 0.94179 0.93431 0.97249 0.91352 0.93834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.47 7.54 71.98 0.54 -2.93 16 2 C -0.06 -1.53 0.53 -52.15 -0.03 -1.56 16 3 C 0.14 3.52 4.56 86.38 0.39 3.92 16 4 N -0.71 -16.09 4.94 -467.23 -2.31 -18.40 16 5 C 0.59 15.30 7.78 86.40 0.67 15.97 16 6 O -0.55 -17.72 15.17 -4.37 -0.07 -17.79 16 7 C -0.32 -6.79 6.52 24.10 0.16 -6.64 16 8 S 0.28 3.26 22.35 -56.49 -1.26 1.99 16 9 C 0.06 0.60 12.20 130.61 1.59 2.20 16 10 N -0.50 -9.58 10.50 -192.58 -2.02 -11.61 16 11 C 0.17 3.95 7.41 84.48 0.63 4.58 16 12 Cl 0.01 0.24 27.38 -2.72 -0.07 0.16 16 13 C -0.11 -3.38 4.91 30.67 0.15 -3.23 16 14 C 0.14 5.51 6.05 86.36 0.52 6.04 16 15 N -0.61 -29.14 3.00 -699.93 -2.10 -31.24 16 16 C -0.26 -14.05 9.58 84.03 0.81 -13.24 16 17 H 0.06 3.24 7.89 -2.91 -0.02 3.22 16 18 C -0.05 -2.58 4.91 84.86 0.42 -2.17 16 19 N -0.93 -53.15 11.19 21.65 0.24 -52.91 16 20 Si 0.96 44.27 29.59 68.60 2.03 46.30 16 21 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 22 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 23 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 24 C 0.18 7.95 4.82 86.22 0.42 8.36 16 25 C -0.12 -3.94 4.73 30.53 0.14 -3.79 16 26 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.06 1.32 6.86 -2.38 -0.02 1.30 16 28 H 0.05 1.55 4.99 -2.39 -0.01 1.54 16 29 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.06 1.65 8.14 -2.38 -0.02 1.64 16 31 H 0.41 7.82 5.34 -92.71 -0.49 7.33 16 32 H 0.26 0.02 8.06 -2.91 -0.02 0.00 16 33 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 34 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.02 0.91 6.69 -2.38 -0.02 0.90 16 36 H 0.05 1.84 7.93 -2.39 -0.02 1.82 16 37 H 0.25 13.83 8.31 -92.71 -0.77 13.06 16 38 H 0.05 2.47 6.04 -2.38 -0.01 2.45 16 39 H 0.01 0.44 6.70 -2.38 -0.02 0.42 16 40 H 0.07 1.91 6.82 -2.38 -0.02 1.89 16 41 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -70.03 351.47 1.43 -68.60 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: 0.58 Total: 7.37 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: 6.41 Total: 7.51 kcal Atomic # 7 Polarization: -107.96 SS G_CDS: -6.19 Total: -114.15 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: -0.07 Total: -17.79 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Atomic # 16 Polarization: 3.26 SS G_CDS: -1.26 Total: 1.99 kcal Atomic # 17 Polarization: 0.24 SS G_CDS: -0.07 Total: 0.16 kcal Total: -70.03 1.43 -68.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484147102.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.165 kcal (2) G-P(sol) polarization free energy of solvation -70.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds