Wall clock time and date at job start Wed Apr 1 2020 02:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86793 * 120.00041 * 2 1 4 4 H 1.48501 * 109.47488 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47360 * 300.00244 * 3 2 1 6 6 H 1.48502 * 109.47036 * 59.99925 * 3 2 1 7 7 C 1.38815 * 119.99818 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99919 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00338 * 359.97438 * 7 2 1 10 10 C 1.46491 * 120.00210 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47259 * 175.04060 * 10 9 7 12 12 N 1.46505 * 109.47210 * 305.42534 * 11 10 9 13 13 C 1.34780 * 119.99822 * 303.92341 * 12 11 10 14 14 O 1.21706 * 119.99980 * 354.66588 * 13 12 11 15 15 C 1.46524 * 119.99964 * 174.66638 * 13 12 11 16 16 S 1.76211 * 126.17766 * 359.97438 * 15 13 12 17 17 C 1.70918 * 90.38847 * 180.02562 * 16 15 13 18 18 N 1.29357 * 110.61938 * 359.97438 * 17 16 15 19 19 C 1.31039 * 117.45848 * 0.02562 * 18 17 16 20 20 Cl 1.73608 * 123.05636 * 179.97438 * 19 18 17 21 21 C 1.52992 * 109.47066 * 65.42151 * 11 10 9 22 22 C 1.53006 * 109.47263 * 179.97438 * 21 11 10 23 23 C 1.53002 * 109.47079 * 300.00032 * 22 21 11 24 24 C 1.53001 * 109.46684 * 59.99921 * 23 22 21 25 25 C 1.52995 * 109.47311 * 185.42357 * 11 10 9 26 26 H 0.96998 * 119.99856 * 359.97438 * 1 2 3 27 27 H 0.96997 * 119.99664 * 0.02562 * 9 7 2 28 28 H 1.09007 * 109.46668 * 55.04020 * 10 9 7 29 29 H 1.09000 * 109.47679 * 295.04388 * 10 9 7 30 30 H 0.96993 * 120.00186 * 123.92286 * 12 11 10 31 31 H 1.07995 * 124.68557 * 180.02562 * 17 16 15 32 32 H 1.09003 * 109.47689 * 300.00364 * 21 11 10 33 33 H 1.09004 * 109.47305 * 59.99941 * 21 11 10 34 34 H 1.08999 * 109.46784 * 180.02562 * 22 21 11 35 35 H 1.09000 * 109.46783 * 60.00229 * 22 21 11 36 36 H 1.09004 * 109.46953 * 300.00292 * 23 22 21 37 37 H 1.08996 * 109.47159 * 179.97438 * 23 22 21 38 38 H 1.09004 * 109.46439 * 180.02562 * 24 23 22 39 39 H 1.09004 * 109.47122 * 60.00475 * 24 23 22 40 40 H 1.09000 * 109.47159 * 300.00444 * 25 11 10 41 41 H 1.09006 * 109.47384 * 59.99858 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3882 0.0016 10 6 2.0581 -3.6568 0.0016 11 6 1.0686 -4.8170 0.1276 12 7 0.2303 -4.6174 1.3124 13 6 0.8012 -4.4591 2.5230 14 8 2.0059 -4.5785 2.6479 15 6 -0.0285 -4.1433 3.6886 16 16 -1.7782 -3.9344 3.6940 17 6 -1.7476 -3.6241 5.3745 18 7 -0.5372 -3.6840 5.8269 19 6 0.4154 -3.9573 4.9695 20 17 2.0886 -4.0724 5.4180 21 6 0.1843 -4.8707 -1.1197 22 6 -0.8048 -6.0313 -0.9940 23 6 -0.0339 -7.3459 -0.8584 24 6 0.8505 -7.2921 0.3889 25 6 1.8390 -6.1318 0.2636 26 1 -0.4850 0.8400 0.0004 27 1 0.3556 -2.3881 0.0016 28 1 2.7504 -3.6766 0.8434 29 1 2.6158 -3.7545 -0.9298 30 1 -0.7356 -4.5991 1.2255 31 1 -2.6185 -3.4087 5.9757 32 1 -0.3646 -3.9340 -1.2167 33 1 0.8079 -5.0192 -2.0012 34 1 -1.4345 -6.0698 -1.8829 35 1 -1.4286 -5.8832 -0.1125 36 1 0.5899 -7.4939 -1.7400 37 1 -0.7385 -8.1727 -0.7684 38 1 1.4000 -8.2285 0.4853 39 1 0.2267 -7.1441 1.2705 40 1 2.4628 -6.2803 -0.6179 41 1 2.4691 -6.0936 1.1522 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485458421.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:45 Heat of formation + Delta-G solvation = 12.749033 kcal Electronic energy + Delta-G solvation = -26683.646296 eV Core-core repulsion = 22944.462239 eV Total energy + Delta-G solvation = -3739.184056 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 343.086 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.47628 -39.64861 -37.54579 -36.40227 -34.64803 -33.27057 -31.59916 -30.72111 -30.26511 -29.10630 -26.14102 -25.27291 -23.01690 -22.70810 -22.06742 -20.51366 -20.05337 -19.22352 -18.68070 -17.16647 -17.00395 -15.66445 -15.44715 -15.19508 -14.98899 -14.66382 -14.42708 -14.25333 -13.93087 -13.63303 -13.44320 -13.21866 -12.92954 -12.29499 -12.27333 -12.12864 -11.98606 -11.73120 -11.63423 -11.29303 -10.98819 -10.90050 -10.85425 -10.79187 -10.52946 -10.21267 -10.15616 -10.03210 -9.86479 -9.65868 -9.62838 -9.32647 -8.88132 -8.77148 -8.56501 -6.82960 -5.72611 -2.98092 0.10660 0.90323 1.28204 2.19747 2.31540 3.24273 3.45941 3.51070 3.52855 3.54663 4.30528 4.63391 4.79758 4.83787 4.87837 4.91928 5.06007 5.31224 5.32860 5.42835 5.58301 5.63063 5.64059 5.69139 5.78067 5.84279 6.09631 6.13063 6.21667 6.29141 6.30959 6.38014 6.50668 6.57642 6.66053 6.90123 7.09058 7.23890 7.77057 7.79619 8.47094 8.49341 9.58862 10.16137 10.51851 11.50621 Molecular weight = 343.09amu Principal moments of inertia in cm(-1) A = 0.007540 B = 0.005960 C = 0.004204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3712.514701 B = 4696.977528 C = 6658.558721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.016 4.016 3 Si 0.903 3.097 4 H -0.281 1.281 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.226 4.226 8 H 0.069 0.931 9 N -0.724 5.724 10 C 0.138 3.862 11 C 0.180 3.820 12 N -0.701 5.701 13 C 0.602 3.398 14 O -0.499 6.499 15 C -0.264 4.264 16 S 0.214 5.786 17 C 0.031 3.969 18 N -0.469 5.469 19 C 0.171 3.829 20 Cl 0.027 6.973 21 C -0.120 4.120 22 C -0.120 4.120 23 C -0.118 4.118 24 C -0.114 4.114 25 C -0.128 4.128 26 H 0.252 0.748 27 H 0.381 0.619 28 H 0.050 0.950 29 H 0.021 0.979 30 H 0.391 0.609 31 H 0.211 0.789 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.068 0.932 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.023 -15.556 4.953 17.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.211 4.211 3 Si 0.735 3.265 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.358 4.358 8 H 0.087 0.913 9 N -0.368 5.368 10 C 0.010 3.990 11 C 0.094 3.906 12 N -0.353 5.353 13 C 0.386 3.614 14 O -0.375 6.375 15 C -0.390 4.390 16 S 0.467 5.533 17 C -0.265 4.265 18 N -0.184 5.184 19 C 0.006 3.994 20 Cl 0.055 6.945 21 C -0.158 4.158 22 C -0.157 4.157 23 C -0.156 4.156 24 C -0.151 4.151 25 C -0.167 4.167 26 H 0.062 0.938 27 H 0.215 0.785 28 H 0.068 0.932 29 H 0.039 0.961 30 H 0.226 0.774 31 H 0.228 0.772 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.591 -15.457 4.901 17.504 hybrid contribution 0.518 1.224 0.406 1.389 sum -6.073 -14.234 5.307 16.360 Atomic orbital electron populations 1.69652 1.04961 1.25216 1.58727 1.24657 0.95515 0.97431 1.03528 0.86160 0.78936 0.84385 0.77046 1.20619 1.22008 1.22047 1.19273 0.91054 0.84140 1.41306 0.91320 1.42218 1.05550 0.99745 1.89329 1.21126 0.93671 0.85062 0.99134 1.20608 0.91119 0.95414 0.83435 1.45756 1.09497 1.73674 1.06369 1.16295 0.86700 0.77243 0.81181 1.90813 1.12961 1.49444 1.84279 1.25888 0.97678 1.16647 0.98791 1.83990 1.00833 1.60345 1.08096 1.28458 0.98038 1.02746 0.97225 1.65616 0.99168 1.16804 1.36849 1.21050 0.90119 1.00764 0.87417 1.98435 1.07483 1.95714 1.92844 1.21801 0.97990 0.99095 0.96945 1.21566 0.97874 0.94862 1.01444 1.21551 0.98499 0.97092 0.98424 1.21452 0.97783 0.98060 0.97839 1.21909 0.98144 0.93096 1.03555 0.93837 0.78526 0.93190 0.96091 0.77428 0.77216 0.90145 0.90335 0.91835 0.92471 0.92014 0.92539 0.92438 0.92364 0.91294 0.89689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -27.83 13.06 55.49 0.72 -27.11 16 2 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 3 Si 0.90 22.98 29.55 -169.99 -5.02 17.96 16 4 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16 6 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 7 C -0.23 -6.42 9.99 -15.06 -0.15 -6.57 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.72 -18.00 5.18 -59.91 -0.31 -18.31 16 10 C 0.14 2.87 4.79 -4.05 -0.02 2.85 16 11 C 0.18 2.84 0.32 -131.82 -0.04 2.80 16 12 N -0.70 -10.92 3.58 -48.95 -0.18 -11.10 16 13 C 0.60 10.63 7.19 -12.92 -0.09 10.54 16 14 O -0.50 -10.00 11.46 5.18 0.06 -9.94 16 15 C -0.26 -4.22 6.52 -36.75 -0.24 -4.46 16 16 S 0.21 2.44 22.36 -107.50 -2.40 0.04 16 17 C 0.03 0.33 12.20 51.72 0.63 0.96 16 18 N -0.47 -6.89 10.50 -12.22 -0.13 -7.02 16 19 C 0.17 2.83 7.41 -18.40 -0.14 2.70 16 20 Cl 0.03 0.45 27.38 -51.86 -1.42 -0.97 16 21 C -0.12 -1.69 4.67 -26.73 -0.12 -1.81 16 22 C -0.12 -1.31 5.75 -26.73 -0.15 -1.46 16 23 C -0.12 -1.19 5.92 -26.73 -0.16 -1.35 16 24 C -0.11 -1.31 5.76 -26.76 -0.15 -1.46 16 25 C -0.13 -1.79 4.57 -26.76 -0.12 -1.92 16 26 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 27 H 0.38 9.68 6.46 -40.82 -0.26 9.41 16 28 H 0.05 1.16 6.25 -51.92 -0.32 0.84 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.39 5.35 6.40 -40.82 -0.26 5.09 16 31 H 0.21 1.31 8.06 -52.49 -0.42 0.89 16 32 H 0.08 1.31 7.11 -51.93 -0.37 0.94 16 33 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.59 6.79 -51.93 -0.35 0.24 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.70 7.61 -51.93 -0.39 0.30 16 40 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.08 1.37 6.28 -51.93 -0.33 1.04 16 LS Contribution 353.07 15.07 5.32 5.32 Total: -1.00 -33.18 353.07 -9.43 -42.62 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -5.22 Total: 8.27 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -0.86 Total: 0.25 kcal Atomic # 7 Polarization: -63.65 SS G_CDS: 0.11 Total: -63.54 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.06 Total: -9.94 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -5.02 Total: 17.96 kcal Atomic # 16 Polarization: 2.44 SS G_CDS: -2.40 Total: 0.04 kcal Atomic # 17 Polarization: 0.45 SS G_CDS: -1.42 Total: -0.97 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.18 -9.43 -42.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485458421.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.365 kcal (2) G-P(sol) polarization free energy of solvation -33.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds