Wall clock time and date at job start Wed Apr 1 2020 03:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 5 5 H 1.08000 * 119.99792 * 239.99917 * 4 2 1 6 6 C 1.37878 * 119.99902 * 59.99463 * 4 2 1 7 7 N 1.31515 * 120.00126 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99745 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47319 * 60.00570 * 8 6 4 10 10 H 1.48503 * 109.46734 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47266 * 300.00384 * 8 6 4 12 12 N 1.46505 * 109.47212 * 120.00008 * 2 1 3 13 13 C 1.46498 * 119.99673 * 60.00290 * 12 2 1 14 14 S 1.65593 * 119.99939 * 239.99810 * 12 2 1 15 15 O 1.42101 * 106.40455 * 203.53915 * 14 12 2 16 16 O 1.42093 * 106.40554 * 336.46252 * 14 12 2 17 17 C 1.76201 * 107.21631 * 90.00236 * 14 12 2 18 18 C 1.38266 * 119.94418 * 269.72540 * 17 14 12 19 19 C 1.38142 * 120.05425 * 179.72865 * 18 17 14 20 20 C 1.38733 * 119.94818 * 0.56527 * 19 18 17 21 21 O 1.35894 * 120.05812 * 179.68575 * 20 19 18 22 22 C 1.42898 * 117.00179 * 0.02562 * 21 20 19 23 23 C 1.50703 * 109.47082 * 180.02562 * 22 21 20 24 24 O 1.20828 * 120.00093 * 0.02562 * 23 22 21 25 25 O 1.34223 * 119.99953 * 180.02562 * 23 22 21 26 26 C 1.38734 * 119.88177 * 359.70738 * 20 19 18 27 27 C 1.38145 * 119.94753 * 0.02562 * 26 20 19 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 30 30 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 31 31 H 0.96999 * 120.00073 * 179.97438 * 7 6 4 32 32 H 1.08992 * 109.47421 * 89.99857 * 13 12 2 33 33 H 1.09007 * 109.46720 * 209.99867 * 13 12 2 34 34 H 1.09003 * 109.47218 * 329.99648 * 13 12 2 35 35 H 1.07996 * 119.97104 * 359.97438 * 18 17 14 36 36 H 1.08004 * 120.02772 * 180.24862 * 19 18 17 37 37 H 1.08998 * 109.46832 * 299.99978 * 22 21 20 38 38 H 1.09000 * 109.47146 * 60.00107 * 22 21 20 39 39 H 0.96701 * 117.00012 * 180.02562 * 25 23 22 40 40 H 1.08005 * 120.02805 * 179.97438 * 26 20 19 41 41 H 1.07999 * 119.97111 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9433 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.8256 -2.5201 -4.0078 10 1 1.8266 -0.4198 -5.2204 11 1 3.8062 -1.1209 -4.0082 12 7 2.0183 -0.6906 1.1962 13 6 1.6645 -2.0932 1.4279 14 16 2.9704 0.1141 2.2862 15 8 3.7119 -0.8789 2.9814 16 8 3.5794 1.1829 1.5748 17 6 1.8961 0.8534 3.4710 18 6 1.4163 2.1335 3.2637 19 6 0.5694 2.7132 4.1884 20 6 0.2097 2.0144 5.3316 21 8 -0.6182 2.5849 6.2459 22 6 -1.0813 3.9074 5.9655 23 6 -1.9804 4.3720 7.0822 24 8 -2.2015 3.6454 8.0219 25 8 -2.5356 5.5930 7.0328 26 6 0.6970 0.7323 5.5401 27 6 1.5392 0.1549 4.6096 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3635 0.5138 -0.8899 31 1 0.7092 1.1618 -3.4843 32 1 2.4157 -2.7377 0.9716 33 1 1.6238 -2.2853 2.5002 34 1 0.6904 -2.3002 0.9846 35 1 1.7007 2.6791 2.3761 36 1 0.1917 3.7116 4.0240 37 1 -0.2284 4.5809 5.8822 38 1 -1.6368 3.9067 5.0277 39 1 -3.1047 5.8468 7.7723 40 1 0.4188 0.1863 6.4294 41 1 1.9191 -0.8430 4.7717 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063087708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:56 Heat of formation + Delta-G solvation = -161.594645 kcal Electronic energy + Delta-G solvation = -27889.384317 eV Core-core repulsion = 23669.638235 eV Total energy + Delta-G solvation = -4219.746081 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 343.101 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.06158 -40.10188 -37.73938 -36.71054 -36.57927 -36.18893 -35.24232 -32.60051 -31.46753 -30.77365 -29.12313 -29.09173 -25.61430 -25.15395 -23.57848 -23.09546 -21.77640 -20.72342 -19.11966 -18.56778 -18.07329 -17.45111 -17.25442 -17.17872 -16.81104 -16.25104 -15.87390 -15.44985 -15.19080 -14.75943 -14.49637 -14.04514 -13.70647 -13.60228 -13.41440 -13.15902 -13.05246 -12.82205 -12.81269 -12.12900 -12.00833 -11.76243 -11.66577 -11.52919 -11.36946 -11.28549 -11.23664 -10.97545 -10.96733 -10.81690 -10.66633 -10.41727 -10.29489 -10.00022 -9.28023 -9.22329 -8.78990 -8.46558 -7.98135 -6.08854 -4.15222 0.74359 1.06247 1.17409 1.60509 1.75650 3.15837 3.28743 3.30242 3.34477 3.38198 3.76414 4.30052 4.33088 4.40187 4.41737 4.50463 4.60627 4.62976 4.87848 5.16899 5.22457 5.23335 5.44867 5.58110 5.74634 5.83027 5.90570 6.00772 6.10883 6.14015 6.34822 6.42105 6.61048 6.74862 6.78571 6.91684 6.98949 7.31082 7.41220 7.61021 7.76569 8.01650 8.25322 8.86766 9.50550 10.96873 Molecular weight = 343.10amu Principal moments of inertia in cm(-1) A = 0.016579 B = 0.002849 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.474178 B = 9826.069610 C =10797.127408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.267 3.733 3 H 0.061 0.939 4 C -0.519 4.519 5 H 0.063 0.937 6 C 0.064 3.936 7 N -0.891 5.891 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.276 1.276 12 N -0.980 5.980 13 C 0.108 3.892 14 S 2.686 3.314 15 O -0.974 6.974 16 O -0.953 6.953 17 C -0.704 4.704 18 C 0.027 3.973 19 C -0.230 4.230 20 C 0.171 3.829 21 O -0.293 6.293 22 C 0.064 3.936 23 C 0.484 3.516 24 O -0.491 6.491 25 O -0.510 6.510 26 C -0.168 4.168 27 C 0.017 3.983 28 H 0.034 0.966 29 H 0.010 0.990 30 H 0.094 0.906 31 H 0.264 0.736 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.073 0.927 35 H 0.148 0.852 36 H 0.137 0.863 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.420 0.580 40 H 0.140 0.860 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.314 6.359 16.299 18.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.165 3.835 3 H 0.078 0.922 4 C -0.559 4.559 5 H 0.081 0.919 6 C -0.138 4.138 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.201 1.201 12 N -0.821 5.821 13 C -0.039 4.039 14 S 2.775 3.225 15 O -0.965 6.965 16 O -0.943 6.943 17 C -0.788 4.788 18 C 0.008 3.992 19 C -0.250 4.250 20 C 0.125 3.875 21 O -0.206 6.206 22 C -0.012 4.012 23 C 0.324 3.676 24 O -0.377 6.377 25 O -0.324 6.324 26 C -0.187 4.187 27 C -0.002 4.002 28 H 0.054 0.946 29 H 0.029 0.971 30 H 0.112 0.888 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.165 0.835 36 H 0.155 0.845 37 H 0.130 0.870 38 H 0.131 0.869 39 H 0.280 0.720 40 H 0.158 0.842 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -5.404 6.148 16.301 18.241 hybrid contribution -0.920 0.134 -0.172 0.946 sum -6.324 6.282 16.129 18.428 Atomic orbital electron populations 1.22144 0.98301 0.99889 1.00639 1.18783 0.91273 0.93141 0.80343 0.92151 1.21289 1.31659 1.13051 0.89906 0.91869 1.24897 0.94939 0.95009 0.98975 1.69841 1.36532 1.22697 1.23913 0.86549 0.79383 0.79585 0.81845 1.20231 1.21247 1.20116 1.57426 1.70384 1.19588 1.34659 1.21201 1.01909 0.81741 0.99011 1.02149 0.74127 0.73490 0.72746 1.93508 1.68569 1.59315 1.75073 1.93568 1.73429 1.56001 1.71324 1.31434 1.23799 1.06946 1.16671 1.20810 0.89290 0.92008 0.97072 1.21340 1.05420 1.01966 0.96236 1.19158 0.88313 0.92546 0.87453 1.86069 1.61253 1.28492 1.44823 1.21889 0.98525 0.84712 0.96083 1.22590 0.78862 0.79442 0.86673 1.90796 1.57861 1.54863 1.34212 1.84435 1.61802 1.33722 1.52397 1.20495 1.02282 0.93523 1.02399 1.20755 0.90779 0.98687 0.90024 0.94646 0.97069 0.88785 0.92636 0.92934 0.93123 0.90820 0.83463 0.84496 0.87035 0.86902 0.71975 0.84246 0.83548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.29 8.95 37.16 0.33 -2.96 16 2 C 0.27 6.30 2.62 -69.08 -0.18 6.11 16 3 H 0.06 1.55 6.91 -51.93 -0.36 1.19 16 4 C -0.52 -13.61 8.37 -34.44 -0.29 -13.90 16 5 H 0.06 1.65 7.65 -52.49 -0.40 1.24 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -24.13 11.32 55.43 0.63 -23.50 16 8 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 12 N -0.98 -19.67 3.06 -115.85 -0.35 -20.03 16 13 C 0.11 1.84 9.53 59.85 0.57 2.41 16 14 S 2.69 51.16 5.64 -107.50 -0.61 50.55 16 15 O -0.97 -19.27 16.35 -57.17 -0.93 -20.21 16 16 O -0.95 -21.12 15.83 -57.17 -0.91 -22.02 16 17 C -0.70 -11.04 5.98 -39.56 -0.24 -11.28 16 18 C 0.03 0.40 9.52 -39.61 -0.38 0.02 16 19 C -0.23 -2.71 9.04 -39.43 -0.36 -3.06 16 20 C 0.17 2.07 6.69 -39.22 -0.26 1.80 16 21 O -0.29 -3.30 9.67 -39.36 -0.38 -3.68 16 22 C 0.06 0.48 5.33 36.01 0.19 0.67 16 23 C 0.48 3.99 8.40 36.01 0.30 4.29 16 24 O -0.49 -6.02 17.26 -25.48 -0.44 -6.46 16 25 O -0.51 -2.62 13.42 -39.24 -0.53 -3.15 16 26 C -0.17 -2.07 9.99 -39.43 -0.39 -2.47 16 27 C 0.02 0.23 9.51 -39.61 -0.38 -0.15 16 28 H 0.03 0.73 6.66 -51.93 -0.35 0.39 16 29 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.09 2.28 6.07 -51.93 -0.32 1.97 16 31 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 32 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.05 0.71 7.79 -51.92 -0.40 0.30 16 34 H 0.07 1.22 6.43 -51.93 -0.33 0.89 16 35 H 0.15 2.12 7.61 -52.49 -0.40 1.72 16 36 H 0.14 1.13 6.30 -52.48 -0.33 0.80 16 37 H 0.11 0.58 7.66 -51.93 -0.40 0.18 16 38 H 0.11 0.63 7.66 -51.93 -0.40 0.23 16 39 H 0.42 0.43 9.10 45.56 0.41 0.84 16 40 H 0.14 1.44 8.06 -52.48 -0.42 1.02 16 41 H 0.15 1.75 7.61 -52.49 -0.40 1.35 16 LS Contribution 362.74 15.07 5.47 5.47 Total: -1.00 -35.05 362.74 -8.32 -43.37 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -4.07 Total: 0.85 kcal Atomic # 6 Polarization: -15.73 SS G_CDS: -1.17 Total: -16.90 kcal Atomic # 7 Polarization: -43.80 SS G_CDS: 0.27 Total: -43.53 kcal Atomic # 8 Polarization: -52.33 SS G_CDS: -3.19 Total: -55.52 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: 51.16 SS G_CDS: -0.61 Total: 50.55 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.05 -8.32 -43.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063087708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.226 kcal (2) G-P(sol) polarization free energy of solvation -35.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds