Wall clock time and date at job start Wed Apr 1 2020 03:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 5 5 H 1.08000 * 119.99792 * 239.99917 * 4 2 1 6 6 C 1.37878 * 119.99902 * 59.99463 * 4 2 1 7 7 N 1.31515 * 120.00126 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99745 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47319 * 60.00570 * 8 6 4 10 10 H 1.48503 * 109.46734 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47266 * 300.00384 * 8 6 4 12 12 N 1.46505 * 109.47212 * 120.00008 * 2 1 3 13 13 C 1.46498 * 119.99673 * 60.00290 * 12 2 1 14 14 S 1.65593 * 119.99939 * 239.99810 * 12 2 1 15 15 O 1.42101 * 106.40455 * 203.53915 * 14 12 2 16 16 O 1.42093 * 106.40554 * 336.46252 * 14 12 2 17 17 C 1.76201 * 107.21631 * 90.00236 * 14 12 2 18 18 C 1.38266 * 119.94418 * 269.72540 * 17 14 12 19 19 C 1.38142 * 120.05425 * 179.72865 * 18 17 14 20 20 C 1.38733 * 119.94818 * 0.56527 * 19 18 17 21 21 O 1.35894 * 120.05812 * 179.68575 * 20 19 18 22 22 C 1.42898 * 117.00179 * 0.02562 * 21 20 19 23 23 C 1.50703 * 109.47082 * 180.02562 * 22 21 20 24 24 O 1.20828 * 120.00093 * 0.02562 * 23 22 21 25 25 O 1.34223 * 119.99953 * 180.02562 * 23 22 21 26 26 C 1.38734 * 119.88177 * 359.70738 * 20 19 18 27 27 C 1.38145 * 119.94753 * 0.02562 * 26 20 19 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 30 30 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 31 31 H 0.96999 * 120.00073 * 179.97438 * 7 6 4 32 32 H 1.08992 * 109.47421 * 89.99857 * 13 12 2 33 33 H 1.09007 * 109.46720 * 209.99867 * 13 12 2 34 34 H 1.09003 * 109.47218 * 329.99648 * 13 12 2 35 35 H 1.07996 * 119.97104 * 359.97438 * 18 17 14 36 36 H 1.08004 * 120.02772 * 180.24862 * 19 18 17 37 37 H 1.08998 * 109.46832 * 299.99978 * 22 21 20 38 38 H 1.09000 * 109.47146 * 60.00107 * 22 21 20 39 39 H 0.96701 * 117.00012 * 180.02562 * 25 23 22 40 40 H 1.08005 * 120.02805 * 179.97438 * 26 20 19 41 41 H 1.07999 * 119.97111 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9433 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.8256 -2.5201 -4.0078 10 1 1.8266 -0.4198 -5.2204 11 1 3.8062 -1.1209 -4.0082 12 7 2.0183 -0.6906 1.1962 13 6 1.6645 -2.0932 1.4279 14 16 2.9704 0.1141 2.2862 15 8 3.7119 -0.8789 2.9814 16 8 3.5794 1.1829 1.5748 17 6 1.8961 0.8534 3.4710 18 6 1.4163 2.1335 3.2637 19 6 0.5694 2.7132 4.1884 20 6 0.2097 2.0144 5.3316 21 8 -0.6182 2.5849 6.2459 22 6 -1.0813 3.9074 5.9655 23 6 -1.9804 4.3720 7.0822 24 8 -2.2015 3.6454 8.0219 25 8 -2.5356 5.5930 7.0328 26 6 0.6970 0.7323 5.5401 27 6 1.5392 0.1549 4.6096 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3635 0.5138 -0.8899 31 1 0.7092 1.1618 -3.4843 32 1 2.4157 -2.7377 0.9716 33 1 1.6238 -2.2853 2.5002 34 1 0.6904 -2.3002 0.9846 35 1 1.7007 2.6791 2.3761 36 1 0.1917 3.7116 4.0240 37 1 -0.2284 4.5809 5.8822 38 1 -1.6368 3.9067 5.0277 39 1 -3.1047 5.8468 7.7723 40 1 0.4188 0.1863 6.4294 41 1 1.9191 -0.8430 4.7717 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063087708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:55 Heat of formation + Delta-G solvation = -187.104136 kcal Electronic energy + Delta-G solvation = -27890.490491 eV Core-core repulsion = 23669.638235 eV Total energy + Delta-G solvation = -4220.852256 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 343.101 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.78930 -40.87818 -38.64150 -38.29313 -37.85911 -37.17605 -36.82784 -34.49784 -32.40678 -31.71419 -30.87638 -29.85960 -27.25504 -26.96670 -24.42447 -24.13715 -22.55461 -22.40534 -20.01701 -19.78437 -18.97622 -18.57591 -18.51168 -18.12520 -17.94375 -17.80558 -17.07318 -16.64666 -16.18877 -16.15395 -15.67415 -15.22802 -15.02634 -14.72899 -14.59727 -14.57706 -14.25687 -13.95338 -13.69359 -13.65949 -13.32553 -13.13166 -13.09626 -12.95673 -12.75960 -12.73218 -12.56037 -12.45775 -12.24491 -12.19863 -12.14020 -11.95560 -11.72850 -11.68672 -11.11786 -10.46788 -10.20744 -9.79861 -9.58408 -8.08688 -6.21477 -0.53028 -0.18290 0.18712 1.01228 1.14828 1.45675 1.47534 1.54248 2.07746 2.45296 2.48824 2.52847 2.90615 3.19809 3.34257 3.55725 3.77692 3.93005 3.95765 4.10730 4.13763 4.17000 4.30021 4.44341 4.72063 4.78023 4.87001 4.87373 5.02096 5.02453 5.06509 5.08148 5.16831 5.22904 5.42107 5.51102 5.64797 5.77002 5.91023 6.04955 6.15904 6.33652 6.85134 6.85380 7.47016 8.95275 Molecular weight = 343.10amu Principal moments of inertia in cm(-1) A = 0.016579 B = 0.002849 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.474178 B = 9826.069610 C =10797.127408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.272 3.728 3 H 0.032 0.968 4 C -0.539 4.539 5 H 0.056 0.944 6 C 0.020 3.980 7 N -0.912 5.912 8 Si 0.953 3.047 9 H -0.268 1.268 10 H -0.282 1.282 11 H -0.280 1.280 12 N -0.989 5.989 13 C 0.099 3.901 14 S 2.693 3.307 15 O -0.988 6.988 16 O -0.995 6.995 17 C -0.712 4.712 18 C 0.009 3.991 19 C -0.221 4.221 20 C 0.180 3.820 21 O -0.306 6.306 22 C 0.051 3.949 23 C 0.493 3.507 24 O -0.540 6.540 25 O -0.499 6.499 26 C -0.170 4.170 27 C 0.013 3.987 28 H 0.042 0.958 29 H 0.033 0.967 30 H 0.069 0.931 31 H 0.265 0.735 32 H 0.045 0.955 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.139 0.861 36 H 0.175 0.825 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.438 0.562 40 H 0.160 0.840 41 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.634 6.849 17.595 20.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.168 3.832 3 H 0.050 0.950 4 C -0.578 4.578 5 H 0.075 0.925 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.778 3.222 9 H -0.193 1.193 10 H -0.207 1.207 11 H -0.205 1.205 12 N -0.829 5.829 13 C -0.046 4.046 14 S 2.788 3.212 15 O -0.979 6.979 16 O -0.986 6.986 17 C -0.802 4.802 18 C -0.011 4.011 19 C -0.240 4.240 20 C 0.134 3.866 21 O -0.219 6.219 22 C -0.024 4.024 23 C 0.336 3.664 24 O -0.430 6.430 25 O -0.314 6.314 26 C -0.189 4.189 27 C -0.006 4.006 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.157 0.843 36 H 0.192 0.808 37 H 0.158 0.842 38 H 0.156 0.844 39 H 0.302 0.698 40 H 0.178 0.822 41 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -6.708 6.628 17.564 19.936 hybrid contribution -0.593 0.124 -0.406 0.729 sum -7.301 6.752 17.158 19.832 Atomic orbital electron populations 1.21938 0.96976 1.00276 1.00487 1.18452 0.92142 0.91681 0.80905 0.95047 1.21626 1.31676 1.13083 0.91431 0.92538 1.25587 0.95228 0.95721 1.01472 1.69951 1.37231 1.23580 1.24388 0.85699 0.78472 0.79042 0.78940 1.19270 1.20708 1.20522 1.57296 1.70330 1.20827 1.34411 1.21413 1.01839 0.80118 1.01222 1.01471 0.74217 0.72752 0.72780 1.93477 1.69527 1.59841 1.75009 1.93508 1.75090 1.57127 1.72860 1.30735 1.25006 1.07873 1.16605 1.20899 0.90456 0.91832 0.97868 1.21623 1.03936 1.03342 0.95066 1.19238 0.87622 0.92426 0.87333 1.86058 1.60743 1.30417 1.44648 1.22318 0.99858 0.83459 0.96755 1.22736 0.78203 0.79544 0.85963 1.90790 1.59763 1.56328 1.36101 1.84404 1.61670 1.32051 1.53287 1.20748 1.01534 0.93992 1.02624 1.20922 0.90977 0.99257 0.89480 0.93894 0.94763 0.91254 0.92619 0.93631 0.89862 0.90328 0.84277 0.80812 0.84174 0.84398 0.69838 0.82210 0.82266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.01 8.95 71.98 0.64 -5.37 16 2 C 0.27 13.07 2.62 44.24 0.12 13.19 16 3 H 0.03 1.69 6.91 -2.39 -0.02 1.67 16 4 C -0.54 -28.75 8.37 25.60 0.21 -28.53 16 5 H 0.06 3.00 7.65 -2.91 -0.02 2.98 16 6 C 0.02 1.07 5.30 84.65 0.45 1.51 16 7 N -0.91 -50.13 11.32 21.45 0.24 -49.89 16 8 Si 0.95 42.74 29.54 68.60 2.03 44.77 16 9 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 10 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 12 N -0.99 -40.03 3.06 -520.44 -1.59 -41.62 16 13 C 0.10 3.34 9.53 127.77 1.22 4.56 16 14 S 2.69 104.10 5.64 -56.49 -0.32 103.79 16 15 O -0.99 -39.19 16.35 -128.00 -2.09 -41.28 16 16 O -1.00 -45.94 15.83 -128.00 -2.03 -47.97 16 17 C -0.71 -21.78 5.98 22.28 0.13 -21.65 16 18 C 0.01 0.25 9.52 22.25 0.21 0.46 16 19 C -0.22 -4.53 9.04 22.37 0.20 -4.33 16 20 C 0.18 3.79 6.69 22.51 0.15 3.94 16 21 O -0.31 -5.90 9.67 -73.28 -0.71 -6.61 16 22 C 0.05 0.58 5.33 71.24 0.38 0.96 16 23 C 0.49 6.84 8.40 71.24 0.60 7.44 16 24 O -0.54 -12.44 17.26 28.39 0.49 -11.95 16 25 O -0.50 -3.62 13.42 -51.35 -0.69 -4.31 16 26 C -0.17 -3.74 9.99 22.37 0.22 -3.51 16 27 C 0.01 0.33 9.51 22.25 0.21 0.54 16 28 H 0.04 1.76 6.66 -2.39 -0.02 1.75 16 29 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.07 3.40 6.07 -2.39 -0.01 3.38 16 31 H 0.26 13.85 8.31 -92.71 -0.77 13.08 16 32 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.08 2.21 7.79 -2.38 -0.02 2.19 16 34 H 0.08 2.54 6.43 -2.39 -0.02 2.52 16 35 H 0.14 4.04 7.61 -2.91 -0.02 4.02 16 36 H 0.17 2.13 6.30 -2.91 -0.02 2.11 16 37 H 0.14 0.81 7.66 -2.39 -0.02 0.80 16 38 H 0.14 0.91 7.66 -2.39 -0.02 0.89 16 39 H 0.44 -0.28 9.10 -74.06 -0.67 -0.96 16 40 H 0.16 2.82 8.06 -2.91 -0.02 2.79 16 41 H 0.16 3.50 7.61 -2.91 -0.02 3.48 16 Total: -1.00 -77.16 362.74 0.49 -76.67 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: 0.41 Total: 9.19 kcal Atomic # 6 Polarization: -35.55 SS G_CDS: 4.75 Total: -30.79 kcal Atomic # 7 Polarization: -90.16 SS G_CDS: -1.35 Total: -91.51 kcal Atomic # 8 Polarization: -107.08 SS G_CDS: -5.03 Total: -112.11 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Atomic # 16 Polarization: 104.10 SS G_CDS: -0.32 Total: 103.79 kcal Total: -77.16 0.49 -76.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063087708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.433 kcal (2) G-P(sol) polarization free energy of solvation -77.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds