Wall clock time and date at job start Wed Apr 1 2020 02:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 119.99973 * 2 1 4 4 H 1.48499 * 109.46989 * 274.45770 * 3 2 1 5 5 H 1.48493 * 109.47193 * 34.46317 * 3 2 1 6 6 H 1.48498 * 109.46903 * 154.46125 * 3 2 1 7 7 C 1.38805 * 119.99441 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99752 * 189.00969 * 7 2 1 9 9 N 1.36936 * 120.00783 * 9.01043 * 7 2 1 10 10 C 1.48154 * 127.83217 * 15.59273 * 9 7 2 11 11 C 1.57690 * 104.67060 * 139.77948 * 10 9 7 12 12 H 1.09004 * 120.32333 * 244.64041 * 11 10 9 13 13 C 1.53002 * 116.11429 * 87.30653 * 11 10 9 14 14 H 1.08994 * 117.40138 * 16.95204 * 13 11 10 15 15 C 1.52997 * 117.44091 * 161.63443 * 13 11 10 16 16 N 1.46495 * 109.47431 * 244.23842 * 15 13 11 17 17 C 1.34773 * 120.00358 * 179.97438 * 16 15 13 18 18 O 1.21686 * 120.00173 * 0.02562 * 17 16 15 19 19 C 1.46686 * 120.00037 * 180.02562 * 17 16 15 20 20 S 1.76208 * 126.13168 * 359.97438 * 19 17 16 21 21 C 1.70952 * 90.31460 * 180.02562 * 20 19 17 22 22 N 1.29424 * 110.39188 * 0.02562 * 21 20 19 23 23 C 1.30944 * 117.36431 * 359.97438 * 22 21 20 24 24 C 1.50701 * 122.90491 * 179.97438 * 23 22 21 25 25 F 1.39909 * 109.46873 * 120.02332 * 24 23 22 26 26 F 1.39894 * 109.47489 * 240.02143 * 24 23 22 27 27 C 1.53004 * 60.55609 * 269.28610 * 13 11 10 28 28 H 1.09000 * 119.53962 * 248.23081 * 27 13 11 29 29 C 1.48138 * 127.84166 * 195.59884 * 9 7 2 30 30 H 0.97005 * 119.99952 * 359.97438 * 1 2 3 31 31 H 1.08999 * 110.40232 * 259.19931 * 10 9 7 32 32 H 1.08995 * 110.40767 * 21.51432 * 10 9 7 33 33 H 1.09004 * 109.46780 * 124.24015 * 15 13 11 34 34 H 1.08997 * 109.47304 * 4.24830 * 15 13 11 35 35 H 0.97001 * 120.00082 * 0.02562 * 16 15 13 36 36 H 1.08004 * 124.80495 * 180.02562 * 21 20 19 37 37 H 1.08998 * 109.46860 * 0.03050 * 24 23 22 38 38 H 1.08998 * 110.41209 * 100.79649 * 29 9 7 39 39 H 1.08998 * 110.40953 * 338.36301 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4034 2.1008 -1.3958 5 1 1.4981 2.6235 0.7922 6 1 3.5917 1.4147 0.6036 7 6 2.0101 -1.2022 -0.0005 8 1 3.0802 -1.2080 0.1459 9 7 1.3382 -2.3807 -0.1868 10 6 -0.0351 -2.5710 -0.7090 11 6 0.0660 -3.8339 -1.6479 12 1 -0.1106 -3.7387 -2.7193 13 6 -0.1198 -5.1932 -0.9706 14 1 -0.5796 -5.2026 0.0175 15 6 -0.4575 -6.3868 -1.8662 16 7 -1.7916 -6.8890 -1.5281 17 6 -2.3029 -7.9440 -2.1928 18 8 -1.6564 -8.4798 -3.0735 19 6 -3.6390 -8.4464 -1.8546 20 16 -4.7098 -7.7977 -0.6147 21 6 -5.8845 -8.9791 -0.9978 22 7 -5.4615 -9.7423 -1.9536 23 6 -4.2711 -9.4945 -2.4397 24 6 -3.6563 -10.3040 -3.5522 25 9 -3.3870 -9.4693 -4.6423 26 9 -2.4649 -10.8840 -3.1036 27 6 1.2846 -4.5977 -1.0893 28 1 2.0156 -5.0715 -1.7444 29 6 1.8194 -3.7545 0.0883 30 1 -0.4850 0.8401 0.0004 31 1 -0.7318 -2.7497 0.1100 32 1 -0.3455 -1.7012 -1.2880 33 1 0.2778 -7.1764 -1.7117 34 1 -0.4408 -6.0740 -2.9102 35 1 -2.3072 -6.4617 -0.8263 36 1 -6.8439 -9.0750 -0.5111 37 1 -4.3497 -11.0877 -3.8573 38 1 1.4123 -4.1180 1.0318 39 1 2.9089 -3.7786 0.1090 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978508921.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:23:06 Heat of formation + Delta-G solvation = -19.732860 kcal Electronic energy + Delta-G solvation = -26731.964601 eV Core-core repulsion = 22439.575344 eV Total energy + Delta-G solvation = -4292.389257 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 343.091 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.04781 -47.04233 -40.67972 -39.55120 -38.59951 -35.11971 -33.44811 -31.87510 -30.88262 -28.75388 -27.06445 -26.95326 -25.16436 -24.89236 -22.08907 -21.20798 -20.44316 -19.90882 -19.40193 -19.22866 -17.75880 -17.38976 -16.86555 -16.76176 -16.60867 -15.93950 -15.72861 -15.25257 -14.81062 -14.67275 -14.33608 -13.96157 -13.85820 -13.60549 -13.37366 -13.15231 -13.07261 -12.85580 -12.71802 -12.60323 -11.90661 -11.36526 -11.28237 -11.14355 -10.87323 -10.73193 -10.61565 -10.32734 -10.24565 -10.14530 -10.14309 -9.79410 -9.75336 -9.53646 -9.17209 -9.06635 -8.69145 -6.91392 -5.84202 -3.18610 -0.40262 0.52577 0.91917 1.76160 2.76029 2.78690 3.00178 3.35633 3.41327 3.43041 3.84836 4.05572 4.13179 4.27852 4.42275 4.50732 4.81227 4.81498 4.87395 5.09598 5.26788 5.32368 5.37800 5.44988 5.70081 5.83433 5.84315 5.89955 6.07822 6.16444 6.48717 6.61752 6.66559 6.83060 6.86346 7.17193 7.29031 7.48366 7.67700 7.84663 8.16650 9.06973 9.69526 10.46347 11.30040 Molecular weight = 343.09amu Principal moments of inertia in cm(-1) A = 0.021629 B = 0.002205 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.248275 B =12695.711946 C =13412.311134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.006 4.006 3 Si 0.914 3.086 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.227 4.227 8 H 0.077 0.923 9 N -0.594 5.594 10 C 0.186 3.814 11 C -0.169 4.169 12 H 0.107 0.893 13 C -0.157 4.157 14 H 0.103 0.897 15 C 0.156 3.844 16 N -0.713 5.713 17 C 0.583 3.417 18 O -0.501 6.501 19 C -0.245 4.245 20 S 0.216 5.784 21 C 0.029 3.971 22 N -0.455 5.455 23 C 0.050 3.950 24 C 0.356 3.644 25 F -0.181 7.181 26 F -0.182 7.182 27 C -0.163 4.163 28 H 0.104 0.896 29 C 0.154 3.846 30 H 0.254 0.746 31 H 0.026 0.974 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.400 0.600 36 H 0.215 0.785 37 H 0.128 0.872 38 H 0.025 0.975 39 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.342 -20.077 -1.760 24.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.203 4.203 3 Si 0.744 3.256 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.355 4.355 8 H 0.095 0.905 9 N -0.317 5.317 10 C 0.060 3.940 11 C -0.189 4.189 12 H 0.125 0.875 13 C -0.176 4.176 14 H 0.121 0.879 15 C 0.033 3.967 16 N -0.365 5.365 17 C 0.366 3.634 18 O -0.377 6.377 19 C -0.371 4.371 20 S 0.472 5.528 21 C -0.267 4.267 22 N -0.168 5.168 23 C -0.091 4.091 24 C 0.299 3.701 25 F -0.162 7.162 26 F -0.163 7.163 27 C -0.184 4.184 28 H 0.122 0.878 29 C 0.027 3.973 30 H 0.064 0.936 31 H 0.044 0.956 32 H 0.107 0.893 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.234 0.766 36 H 0.231 0.769 37 H 0.145 0.855 38 H 0.043 0.957 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.168 -19.725 -1.769 23.783 hybrid contribution 0.388 0.588 -0.244 0.746 sum -12.780 -19.137 -2.013 23.100 Atomic orbital electron populations 1.69893 1.05069 1.25427 1.55855 1.24898 0.95669 0.98015 1.01705 0.86079 0.78738 0.83222 0.77594 1.21498 1.21659 1.20473 1.19022 0.90842 0.82323 1.43302 0.90513 1.45152 1.13414 1.00019 1.73136 1.21660 0.86720 0.92608 0.93032 1.25119 1.01921 0.92365 0.99521 0.87550 1.22542 1.01279 0.93640 1.00100 0.87889 1.20969 0.81830 0.95025 0.98844 1.45889 1.19712 1.31864 1.39030 1.16648 0.83396 0.80805 0.82555 1.90936 1.59303 1.57394 1.30062 1.25889 1.02209 1.03941 1.05062 1.84222 1.07196 1.30711 1.30647 1.28731 1.05020 0.95152 0.97751 1.65842 1.12380 1.27724 1.10862 1.21088 0.91166 0.96447 1.00349 1.19438 0.83321 0.87602 0.79696 1.93069 1.94697 1.74061 1.54405 1.93060 1.49506 1.84116 1.89602 1.23800 0.89562 1.02162 1.02838 0.87824 1.21163 0.97239 0.85931 0.92921 0.93559 0.95622 0.89330 0.90742 0.90841 0.76577 0.76902 0.85522 0.95743 0.93037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.28 10.86 55.49 0.60 -25.68 16 2 C -0.01 -0.16 5.40 -17.43 -0.09 -0.26 16 3 Si 0.91 21.65 29.56 -169.99 -5.03 16.62 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.23 -6.22 10.35 -15.06 -0.16 -6.38 16 8 H 0.08 2.04 7.84 -52.48 -0.41 1.63 16 9 N -0.59 -14.89 3.38 -166.74 -0.56 -15.45 16 10 C 0.19 4.31 5.76 -0.57 0.00 4.30 16 11 C -0.17 -3.06 7.03 -87.38 -0.61 -3.68 16 12 H 0.11 1.84 8.12 -51.93 -0.42 1.42 16 13 C -0.16 -2.30 5.34 -90.62 -0.48 -2.78 16 14 H 0.10 1.49 8.04 -51.93 -0.42 1.07 16 15 C 0.16 2.05 5.95 -4.05 -0.02 2.03 16 16 N -0.71 -8.50 5.55 -61.62 -0.34 -8.85 16 17 C 0.58 7.79 7.74 -12.85 -0.10 7.69 16 18 O -0.50 -8.28 13.04 5.20 0.07 -8.21 16 19 C -0.25 -2.69 6.44 -37.09 -0.24 -2.93 16 20 S 0.22 1.45 22.35 -107.50 -2.40 -0.95 16 21 C 0.03 0.17 12.22 51.75 0.63 0.81 16 22 N -0.46 -4.16 10.50 -11.53 -0.12 -4.28 16 23 C 0.05 0.55 6.25 -83.89 -0.52 0.02 16 24 C 0.36 3.96 5.07 36.01 0.18 4.15 16 25 F -0.18 -2.45 15.77 2.25 0.04 -2.42 16 26 F -0.18 -2.42 15.77 2.25 0.04 -2.38 16 27 C -0.16 -2.79 6.77 -89.22 -0.60 -3.40 16 28 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 29 C 0.15 3.13 7.04 -2.41 -0.02 3.11 16 30 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 31 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.09 2.32 6.50 -51.93 -0.34 1.98 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.07 1.03 7.94 -51.93 -0.41 0.62 16 35 H 0.40 3.96 7.59 -40.82 -0.31 3.65 16 36 H 0.21 0.40 8.06 -52.48 -0.42 -0.02 16 37 H 0.13 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 350.71 15.07 5.29 5.29 Total: -1.00 -33.53 350.71 -8.88 -42.41 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -4.40 Total: 1.21 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: -2.04 Total: 2.68 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: -0.42 Total: -54.26 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: 0.07 Total: -8.21 kcal Atomic # 9 Polarization: -4.87 SS G_CDS: 0.07 Total: -4.80 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Atomic # 16 Polarization: 1.45 SS G_CDS: -2.40 Total: -0.95 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.53 -8.88 -42.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978508921.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.679 kcal (2) G-P(sol) polarization free energy of solvation -33.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds