Wall clock time and date at job start Wed Apr 1 2020 02:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86798 * 120.00305 * 2 1 4 4 H 1.48493 * 109.47326 * 270.00543 * 3 2 1 5 5 H 1.48506 * 109.46545 * 30.00293 * 3 2 1 6 6 H 1.48498 * 109.47210 * 150.00004 * 3 2 1 7 7 C 1.38805 * 120.00030 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99906 * 179.97438 * 7 2 1 9 9 S 1.76203 * 119.99580 * 359.71792 * 7 2 1 10 10 C 1.81002 * 99.99786 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47279 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99904 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99698 * 179.97438 * 11 10 9 14 14 C 1.47211 * 135.97978 * 359.63719 * 13 11 10 15 15 C 1.53000 * 87.68684 * 153.59347 * 14 13 11 16 16 C 1.47221 * 135.96973 * 179.97438 * 13 11 10 17 17 C 1.53656 * 115.10882 * 140.90833 * 15 14 13 18 18 C 1.55485 * 101.96861 * 111.49396 * 17 15 14 19 19 H 1.08994 * 111.14588 * 275.53204 * 18 17 15 20 20 N 1.46507 * 111.10554 * 151.42764 * 18 17 15 21 21 C 1.34777 * 120.00049 * 161.88817 * 20 18 17 22 22 O 1.21352 * 119.99484 * 0.02562 * 21 20 18 23 23 C 1.49440 * 119.99898 * 180.02562 * 21 20 18 24 24 N 1.34783 * 119.99774 * 180.02562 * 23 21 20 25 25 O 1.21348 * 120.00187 * 359.97438 * 23 21 20 26 26 C 1.55024 * 101.04313 * 33.49177 * 18 17 15 27 27 O 1.42393 * 116.33814 * 269.49390 * 15 14 13 28 28 H 0.97000 * 119.99668 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47407 * 300.00715 * 10 9 7 30 30 H 1.09004 * 109.47205 * 60.00275 * 10 9 7 31 31 H 1.09004 * 113.49512 * 268.27379 * 14 13 11 32 32 H 1.08999 * 113.49872 * 38.80751 * 14 13 11 33 33 H 1.08996 * 113.50040 * 321.19256 * 16 13 11 34 34 H 1.08998 * 113.49699 * 91.72651 * 16 13 11 35 35 H 1.08995 * 110.93459 * 229.66560 * 17 15 14 36 36 H 1.09006 * 110.93233 * 353.32922 * 17 15 14 37 37 H 0.96999 * 119.99564 * 341.89326 * 20 18 17 38 38 H 0.96994 * 120.00303 * 359.97438 * 24 23 21 39 39 H 0.96999 * 119.99490 * 180.02562 * 24 23 21 40 40 H 1.08994 * 110.29716 * 205.04448 * 26 18 17 41 41 H 1.08993 * 110.38557 * 82.93932 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1293 -2.7280 0.0063 10 6 2.5158 -3.8915 0.0035 11 6 1.9873 -5.3028 0.0081 12 8 0.7910 -5.5023 0.0132 13 7 2.8441 -6.3431 0.0065 14 6 4.3067 -6.5099 -0.0056 15 6 4.0963 -7.8594 0.6840 16 6 2.7271 -7.8107 0.0099 17 6 5.0232 -8.9877 0.2056 18 6 5.9220 -9.2175 1.4533 19 1 6.7579 -8.5182 1.4699 20 7 6.3956 -10.6025 1.5145 21 6 7.4551 -10.9191 2.2850 22 8 8.0164 -10.0569 2.9285 23 6 7.9384 -12.3318 2.3469 24 7 8.9977 -12.6484 3.1179 25 8 7.3767 -13.1940 1.7038 26 6 4.9215 -8.9187 2.5991 27 8 4.0950 -7.8479 2.1079 28 1 -0.4850 0.8401 0.0004 29 1 3.1211 -3.7334 -0.8891 30 1 3.1278 -3.7295 0.8908 31 1 4.7261 -6.5949 -1.0081 32 1 4.8323 -5.7817 0.6120 33 1 1.9189 -8.1808 0.6406 34 1 2.7183 -8.2483 -0.9883 35 1 4.4528 -9.8850 -0.0341 36 1 5.6185 -8.6665 -0.6493 37 1 5.9466 -11.2917 1.0003 38 1 9.4464 -11.9593 3.6323 39 1 9.3116 -13.5653 3.1578 40 1 5.4559 -8.6034 3.4951 41 1 4.3140 -9.7983 2.8117 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001068995049.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:15:31 Heat of formation + Delta-G solvation = -97.251229 kcal Electronic energy + Delta-G solvation = -26593.928819 eV Core-core repulsion = 22409.265629 eV Total energy + Delta-G solvation = -4184.663190 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 343.108 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.56521 -40.90197 -39.15207 -38.51788 -36.84740 -35.53166 -34.17816 -32.41218 -31.66619 -30.40583 -28.59564 -26.29385 -25.85640 -25.76850 -25.31633 -22.26513 -21.33630 -20.59644 -19.45932 -19.02521 -17.91926 -17.69058 -17.19154 -16.78001 -16.51626 -16.33002 -16.09179 -15.78105 -15.34927 -15.16746 -14.79394 -14.78109 -14.51757 -14.07169 -13.89393 -13.71014 -13.58689 -13.03381 -12.78967 -12.59574 -12.39919 -12.27343 -12.04971 -11.84561 -11.75315 -11.12749 -11.04527 -10.99743 -10.74621 -10.53963 -10.35854 -10.00612 -9.81425 -9.76663 -9.38084 -9.05026 -8.63482 -8.21988 -6.48459 -6.19894 -3.90508 0.77026 1.77192 2.56626 2.73001 3.00757 3.12490 3.23653 3.25635 3.30194 3.31997 3.57313 3.70271 3.87418 3.95331 4.11475 4.21883 4.39691 4.49151 4.74246 5.02981 5.06379 5.11961 5.15130 5.18552 5.22598 5.30967 5.34066 5.36493 5.49443 5.59972 5.63779 5.83161 5.91994 6.00248 6.17229 6.24097 6.61220 6.61645 7.12692 7.36340 7.61368 7.85072 8.37070 8.56100 9.25228 10.87580 Molecular weight = 343.11amu Principal moments of inertia in cm(-1) A = 0.025134 B = 0.001835 C = 0.001749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.749527 B =15255.442454 C =16002.012372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.144 4.144 11 C 0.565 3.435 12 O -0.514 6.514 13 N -0.646 5.646 14 C 0.097 3.903 15 C 0.073 3.927 16 C 0.100 3.900 17 C -0.142 4.142 18 C 0.110 3.890 19 H 0.116 0.884 20 N -0.688 5.688 21 C 0.508 3.492 22 O -0.512 6.512 23 C 0.515 3.485 24 N -0.821 5.821 25 O -0.520 6.520 26 C 0.039 3.961 27 O -0.332 6.332 28 H 0.268 0.732 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.417 0.583 38 H 0.415 0.585 39 H 0.413 0.587 40 H 0.098 0.902 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.100 -27.126 3.006 33.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.294 4.294 11 C 0.355 3.645 12 O -0.387 6.387 13 N -0.385 5.385 14 C -0.027 4.027 15 C 0.031 3.969 16 C -0.023 4.023 17 C -0.181 4.181 18 C 0.005 3.995 19 H 0.134 0.866 20 N -0.343 5.343 21 C 0.288 3.712 22 O -0.386 6.386 23 C 0.294 3.706 24 N -0.387 5.387 25 O -0.396 6.396 26 C -0.039 4.039 27 O -0.249 6.249 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.116 0.884 32 H 0.107 0.893 33 H 0.104 0.896 34 H 0.112 0.888 35 H 0.114 0.886 36 H 0.121 0.879 37 H 0.254 0.746 38 H 0.246 0.754 39 H 0.245 0.755 40 H 0.116 0.884 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 17.768 -26.727 3.140 32.247 hybrid contribution 2.276 0.733 -0.071 2.392 sum 20.044 -25.994 3.069 32.968 Atomic orbital electron populations 1.70023 1.05949 1.27441 1.46859 1.24996 0.95034 0.99017 0.94541 0.86159 0.79424 0.81542 0.78323 1.20281 1.20738 1.19682 1.22861 0.94913 0.91580 1.58946 0.90909 1.85402 1.04910 0.96322 1.96717 1.23468 1.06502 0.94570 1.04882 1.19903 0.85211 0.84811 0.74545 1.90716 1.14757 1.84832 1.48417 1.49502 1.07395 1.05736 1.75843 1.23372 0.83333 0.95638 1.00341 1.22750 0.96126 0.95126 0.82867 1.23194 0.96927 0.81945 1.00252 1.23153 0.97307 0.99548 0.98065 1.22875 0.98027 0.83022 0.95544 0.86621 1.45601 1.31146 1.10750 1.46806 1.20121 0.81313 0.89129 0.80630 1.90820 1.56118 1.49560 1.42138 1.20039 0.81378 0.89011 0.80217 1.43536 1.32214 1.15110 1.47844 1.90844 1.56128 1.49821 1.42759 1.23928 0.91478 0.91187 0.97315 1.88504 1.68429 1.50889 1.17091 0.92186 0.89342 0.89192 0.88445 0.89292 0.89614 0.88777 0.88583 0.87926 0.74603 0.75397 0.75458 0.88422 0.91218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.46 13.22 55.49 0.73 -25.73 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.64 29.55 -169.99 -5.02 16.61 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.53 -15.49 9.50 30.94 0.29 -15.20 16 8 H 0.07 1.99 7.80 -52.49 -0.41 1.59 16 9 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 10 C -0.14 -3.07 5.98 36.01 0.22 -2.86 16 11 C 0.57 11.49 8.10 -10.99 -0.09 11.40 16 12 O -0.51 -12.51 16.64 5.56 0.09 -12.42 16 13 N -0.65 -9.63 3.69 -185.04 -0.68 -10.31 16 14 C 0.10 0.97 7.92 -7.92 -0.06 0.91 16 15 C 0.07 0.63 1.75 -90.45 -0.16 0.47 16 16 C 0.10 1.09 8.13 -8.07 -0.07 1.03 16 17 C -0.14 -0.65 6.03 -25.07 -0.15 -0.80 16 18 C 0.11 0.62 3.37 -65.54 -0.22 0.40 16 19 H 0.12 0.73 7.74 -51.93 -0.40 0.33 16 20 N -0.69 -3.48 5.23 -51.93 -0.27 -3.75 16 21 C 0.51 3.32 7.89 -11.59 -0.09 3.22 16 22 O -0.51 -4.46 16.23 5.49 0.09 -4.38 16 23 C 0.52 3.08 8.16 -11.59 -0.09 2.99 16 24 N -0.82 -2.37 8.87 30.90 0.27 -2.10 16 25 O -0.52 -4.43 17.31 5.50 0.10 -4.34 16 26 C 0.04 0.30 7.49 38.23 0.29 0.58 16 27 O -0.33 -3.64 11.18 -35.23 -0.39 -4.03 16 28 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 29 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 30 H 0.09 1.82 8.14 -51.91 -0.42 1.40 16 31 H 0.10 0.69 7.95 -51.93 -0.41 0.28 16 32 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.09 0.77 8.13 -51.93 -0.42 0.35 16 35 H 0.10 0.29 7.96 -51.93 -0.41 -0.12 16 36 H 0.10 0.30 7.81 -51.93 -0.41 -0.10 16 37 H 0.42 1.56 7.98 -40.82 -0.33 1.24 16 38 H 0.42 0.73 8.30 -40.82 -0.34 0.39 16 39 H 0.41 0.46 8.93 -40.82 -0.36 0.10 16 40 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 373.39 15.07 5.63 5.63 Total: -1.00 -39.82 373.39 -7.07 -46.89 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: -5.17 Total: -2.37 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: -0.23 Total: 4.18 kcal Atomic # 7 Polarization: -41.93 SS G_CDS: 0.05 Total: -41.88 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: -0.12 Total: -25.16 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -39.82 -7.07 -46.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001068995049.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.362 kcal (2) G-P(sol) polarization free energy of solvation -39.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds