Wall clock time and date at job start Wed Apr 1 2020 02:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86803 * 120.00098 * 2 1 4 4 H 1.48494 * 109.47037 * 269.99965 * 3 2 1 5 5 H 1.48500 * 109.46637 * 30.00199 * 3 2 1 6 6 H 1.48501 * 109.46979 * 149.99977 * 3 2 1 7 7 C 1.38798 * 120.00054 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00065 * 0.02562 * 7 2 1 9 9 S 1.76198 * 120.00020 * 179.97438 * 7 2 1 10 10 C 1.81006 * 99.99949 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46981 * 180.02562 * 10 9 7 12 12 O 1.21282 * 119.99881 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99861 * 179.97438 * 11 10 9 14 14 C 1.47043 * 120.44886 * 359.90030 * 13 11 10 15 15 C 1.53378 * 108.59045 * 235.05198 * 14 13 11 16 16 N 1.46966 * 108.77656 * 310.83501 * 15 14 13 17 17 C 1.34777 * 120.59124 * 235.12004 * 16 15 14 18 18 O 1.21279 * 120.00094 * 359.97438 * 17 16 15 19 19 C 1.50703 * 119.99663 * 179.97438 * 17 16 15 20 20 H 1.09000 * 115.55205 * 34.27754 * 19 17 16 21 21 C 1.53001 * 117.49707 * 248.60501 * 19 17 16 22 22 C 1.52998 * 60.00152 * 252.51092 * 21 19 17 23 23 H 1.08995 * 117.49965 * 107.48815 * 22 21 19 24 24 N 1.46499 * 117.49906 * 252.51273 * 22 21 19 25 25 O 1.21806 * 119.99725 * 188.61916 * 24 22 21 26 26 O 1.21798 * 120.00243 * 8.61931 * 24 22 21 27 27 C 1.46961 * 118.81251 * 55.13672 * 16 15 14 28 28 C 1.46959 * 120.59588 * 179.97438 * 13 11 10 29 29 H 0.96999 * 120.00298 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.47174 * 60.00169 * 10 9 7 31 31 H 1.09000 * 109.46854 * 299.99893 * 10 9 7 32 32 H 1.08996 * 109.49194 * 115.40593 * 14 13 11 33 33 H 1.09002 * 109.77433 * 354.86464 * 14 13 11 34 34 H 1.09002 * 109.61172 * 191.00262 * 15 14 13 35 35 H 1.09000 * 109.60946 * 70.66564 * 15 14 13 36 36 H 1.08992 * 117.49833 * 0.02562 * 21 19 17 37 37 H 1.09001 * 117.49514 * 145.02060 * 21 19 17 38 38 H 1.09004 * 109.60782 * 64.51986 * 27 16 15 39 39 H 1.09003 * 109.61006 * 184.86012 * 27 16 15 40 40 H 1.09002 * 109.60504 * 5.03515 * 28 13 11 41 41 H 1.08998 * 109.75672 * 244.60259 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1373 0.0005 9 16 3.7722 -1.2020 -0.0001 10 6 4.0866 -2.9846 0.0001 11 6 5.5730 -3.2325 0.0002 12 8 6.3440 -2.2963 0.0006 13 7 6.0457 -4.4947 0.0010 14 6 5.1199 -5.6371 0.0039 15 6 5.4609 -6.5398 1.1960 16 7 6.9080 -6.7967 1.1961 17 6 7.3805 -8.0589 1.1973 18 8 6.6096 -8.9951 1.1987 19 6 8.8670 -8.3068 1.1968 20 1 9.4648 -7.5821 1.7496 21 6 9.4817 -8.9128 -0.0664 22 6 9.3406 -9.7617 1.1986 23 1 8.5770 -10.5395 1.2001 24 7 10.5628 -10.0744 1.9433 25 8 10.5282 -10.8722 2.8630 26 8 11.6135 -9.5366 1.6428 27 6 7.8304 -5.6526 1.1953 28 6 7.4926 -4.7516 0.0005 29 1 -0.4850 0.8400 -0.0004 30 1 3.6433 -3.4318 -0.8896 31 1 3.6440 -3.4314 0.8904 32 1 5.2318 -6.1983 -0.9238 33 1 4.0941 -5.2802 0.0970 34 1 4.9220 -7.4831 1.1066 35 1 5.1774 -6.0431 2.1239 36 1 8.8111 -9.1317 -0.8973 37 1 10.4840 -8.5869 -0.3446 38 1 7.7161 -5.0900 2.1219 39 1 8.8565 -6.0100 1.1085 40 1 8.0316 -3.8083 0.0897 41 1 7.7781 -5.2499 -0.9259 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001522425169.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:16:43 Heat of formation + Delta-G solvation = -29.434600 kcal Electronic energy + Delta-G solvation = -27076.743010 eV Core-core repulsion = 22895.020569 eV Total energy + Delta-G solvation = -4181.722441 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 343.108 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.83419 -41.14187 -39.80513 -37.83165 -37.13583 -36.67839 -34.50494 -32.51945 -32.20917 -30.01794 -28.57673 -27.75864 -25.70233 -25.50510 -24.00472 -22.99218 -22.59879 -20.57099 -19.77724 -18.98872 -18.97233 -18.01337 -17.85421 -17.48241 -16.86894 -16.48335 -16.08229 -16.00520 -15.73736 -15.16524 -15.04702 -14.64068 -14.05003 -14.00717 -13.75588 -13.56627 -13.39059 -12.96457 -12.86938 -12.29234 -12.26249 -12.20033 -12.06335 -11.99404 -11.85878 -11.77203 -11.56066 -11.54946 -11.34120 -11.08223 -10.70288 -10.63769 -9.94799 -9.78077 -9.67246 -9.08375 -8.73730 -8.60316 -7.02537 -6.36610 -4.09760 -0.09441 0.96155 1.55112 2.05018 2.46527 2.56787 2.70610 3.01370 3.04803 3.26526 3.35369 3.43023 3.47444 3.52540 3.84320 4.22435 4.25909 4.31132 4.35739 4.43974 4.60674 4.67198 4.72189 4.76926 4.81683 4.93019 4.98114 5.02415 5.19139 5.31677 5.40706 5.48000 5.58788 5.74064 5.79733 5.82973 6.21149 6.57675 7.09614 7.15549 7.31916 7.86070 8.18848 8.33195 9.09191 10.72452 Molecular weight = 343.11amu Principal moments of inertia in cm(-1) A = 0.033499 B = 0.001988 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.642055 B =14079.634970 C =14574.245284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.236 1.236 7 C -0.523 4.523 8 H 0.089 0.911 9 S -0.141 6.141 10 C -0.124 4.124 11 C 0.536 3.464 12 O -0.514 6.514 13 N -0.622 5.622 14 C 0.095 3.905 15 C 0.095 3.905 16 N -0.599 5.599 17 C 0.547 3.453 18 O -0.530 6.530 19 C -0.150 4.150 20 H 0.149 0.851 21 C -0.104 4.104 22 C -0.061 4.061 23 H 0.186 0.814 24 N 0.010 4.990 25 O -0.149 6.149 26 O -0.159 6.159 27 C 0.088 3.912 28 C 0.101 3.899 29 H 0.271 0.729 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.075 0.925 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.082 0.918 36 H 0.136 0.864 37 H 0.142 0.858 38 H 0.084 0.916 39 H 0.097 0.903 40 H 0.110 0.890 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.501 -18.717 0.107 26.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.160 1.160 7 C -0.671 4.671 8 H 0.107 0.893 9 S 0.086 5.914 10 C -0.274 4.274 11 C 0.324 3.676 12 O -0.387 6.387 13 N -0.359 5.359 14 C -0.029 4.029 15 C -0.027 4.027 16 N -0.331 5.331 17 C 0.334 3.666 18 O -0.406 6.406 19 C -0.172 4.172 20 H 0.166 0.834 21 C -0.142 4.142 22 C -0.160 4.160 23 H 0.203 0.797 24 N 0.532 4.468 25 O -0.369 6.369 26 O -0.377 6.377 27 C -0.036 4.036 28 C -0.023 4.023 29 H 0.081 0.919 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.094 0.906 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.100 0.900 36 H 0.154 0.846 37 H 0.160 0.840 38 H 0.102 0.898 39 H 0.115 0.885 40 H 0.128 0.872 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 18.394 -17.525 -0.284 25.408 hybrid contribution -0.651 -0.432 0.258 0.823 sum 17.744 -17.957 -0.026 25.245 Atomic orbital electron populations 1.69930 1.05903 1.27859 1.47752 1.24715 0.94464 0.98989 0.93125 0.86737 0.81856 0.83301 0.79959 1.19179 1.19873 1.15964 1.22282 0.88085 0.97556 1.59130 0.89346 1.84826 1.09528 0.99650 1.97422 1.23322 0.93734 1.04682 1.05682 1.20383 0.90830 0.81607 0.74798 1.90703 1.58704 1.41513 1.47819 1.48052 1.06117 1.05818 1.75867 1.22168 0.95200 0.87282 0.98274 1.22170 0.79581 1.01516 0.99446 1.47904 1.07899 1.05062 1.72252 1.19111 0.87876 0.83007 0.76636 1.90770 1.57995 1.41947 1.49910 1.22811 0.96650 0.92768 1.04958 0.83364 1.23693 1.05190 0.95304 0.90021 1.25007 0.89820 0.99260 1.01959 0.79655 1.43782 1.03168 0.99411 1.00458 1.94608 1.92786 1.28952 1.20521 1.94557 1.19614 1.52219 1.71315 1.22373 0.93491 0.87226 1.00487 1.21877 0.82253 1.00979 0.97218 0.91858 0.88397 0.88383 0.90643 0.87422 0.87345 0.89979 0.84615 0.84008 0.89804 0.88516 0.87223 0.90986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.79 13.97 55.49 0.78 -25.01 16 2 C 0.10 2.72 5.50 -17.43 -0.10 2.63 16 3 Si 0.86 21.11 27.74 -169.99 -4.72 16.39 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.24 -5.77 6.74 56.52 0.38 -5.39 16 7 C -0.52 -14.46 10.04 30.94 0.31 -14.15 16 8 H 0.09 2.54 8.03 -52.49 -0.42 2.12 16 9 S -0.14 -3.38 18.55 -107.50 -1.99 -5.37 16 10 C -0.12 -2.17 4.49 36.01 0.16 -2.01 16 11 C 0.54 8.44 7.71 -10.98 -0.08 8.36 16 12 O -0.51 -9.93 15.27 5.56 0.08 -9.84 16 13 N -0.62 -6.76 2.95 -172.40 -0.51 -7.27 16 14 C 0.09 0.80 6.51 -3.55 -0.02 0.77 16 15 C 0.10 0.74 6.59 -3.59 -0.02 0.71 16 16 N -0.60 -4.27 2.95 -172.46 -0.51 -4.78 16 17 C 0.55 4.18 7.48 -10.98 -0.08 4.10 16 18 O -0.53 -5.74 15.66 5.56 0.09 -5.66 16 19 C -0.15 -0.76 4.88 -91.77 -0.45 -1.20 16 20 H 0.15 0.56 6.78 -51.93 -0.35 0.20 16 21 C -0.10 -0.34 9.72 -26.73 -0.26 -0.60 16 22 C -0.06 -0.37 6.42 -67.93 -0.44 -0.81 16 23 H 0.19 1.14 7.67 -51.93 -0.40 0.74 16 24 N 0.01 0.08 4.33 -4.89 -0.02 0.06 16 25 O -0.15 -1.60 19.24 -29.46 -0.57 -2.16 16 26 O -0.16 -1.47 18.28 -29.46 -0.54 -2.01 16 27 C 0.09 0.51 6.47 -3.58 -0.02 0.49 16 28 C 0.10 0.81 6.60 -3.58 -0.02 0.79 16 29 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.10 1.60 7.92 -51.92 -0.41 1.19 16 31 H 0.10 1.58 7.71 -51.92 -0.40 1.18 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.11 0.91 5.91 -51.93 -0.31 0.60 16 34 H 0.11 0.86 6.99 -51.93 -0.36 0.50 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.14 0.31 8.14 -51.93 -0.42 -0.12 16 37 H 0.14 0.30 7.63 -51.93 -0.40 -0.09 16 38 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.10 0.30 5.63 -51.93 -0.29 0.00 16 40 H 0.11 1.03 6.99 -51.93 -0.36 0.67 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 362.58 15.07 5.46 5.46 Total: -1.00 -35.66 362.58 -8.44 -44.10 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: -4.97 Total: -2.99 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -1.03 Total: -0.92 kcal Atomic # 7 Polarization: -36.74 SS G_CDS: -0.26 Total: -37.00 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: -0.93 Total: -19.67 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.72 Total: 16.39 kcal Atomic # 16 Polarization: -3.38 SS G_CDS: -1.99 Total: -5.37 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.66 -8.44 -44.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001522425169.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.665 kcal (2) G-P(sol) polarization free energy of solvation -35.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds