Wall clock time and date at job start Wed Apr 1 2020 02:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34234 * 116.99873 * 2 1 4 4 O 1.20823 * 120.00047 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99914 * 180.02562 * 3 2 1 6 6 H 1.08996 * 109.47116 * 59.99444 * 5 3 2 7 7 C 1.53005 * 109.46791 * 299.99303 * 5 3 2 8 8 C 1.52999 * 109.46913 * 174.99963 * 7 5 3 9 9 F 1.39898 * 109.46943 * 174.99978 * 8 7 5 10 10 F 1.39891 * 109.47293 * 295.00202 * 8 7 5 11 11 N 1.46501 * 109.46870 * 179.97438 * 5 3 2 12 12 C 1.34780 * 119.99510 * 204.99854 * 11 5 3 13 13 O 1.21590 * 120.00046 * 359.97438 * 12 11 5 14 14 C 1.47535 * 119.99849 * 180.02562 * 12 11 5 15 15 C 1.39666 * 120.19596 * 0.02562 * 14 12 11 16 16 C 1.37830 * 119.92216 * 179.97438 * 15 14 12 17 17 C 1.38580 * 120.32044 * 359.97438 * 16 15 14 18 18 C 1.38026 * 120.40073 * 0.02562 * 17 16 15 19 19 C 1.38831 * 120.07207 * 0.02562 * 18 17 16 20 20 O 1.35519 * 120.16246 * 180.02562 * 19 18 17 21 21 C 1.34818 * 117.00123 * 354.39673 * 20 19 18 22 22 H 1.08011 * 119.99422 * 5.06547 * 21 20 19 23 23 C 1.38693 * 120.00642 * 185.06428 * 21 20 19 24 24 N 1.31525 * 119.99570 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00271 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47084 * 90.00381 * 25 23 21 27 27 H 1.48500 * 109.47153 * 210.00044 * 25 23 21 28 28 H 1.48498 * 109.47115 * 330.00264 * 25 23 21 29 29 H 1.08997 * 109.46868 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46980 * 300.00209 * 1 2 3 31 31 H 1.08993 * 109.47141 * 60.00422 * 1 2 3 32 32 H 1.08993 * 109.47027 * 295.00273 * 7 5 3 33 33 H 1.08996 * 109.47110 * 55.00087 * 7 5 3 34 34 H 1.09010 * 109.46799 * 55.00587 * 8 7 5 35 35 H 0.96994 * 120.00085 * 24.99659 * 11 5 3 36 36 H 1.08003 * 120.04115 * 359.97438 * 15 14 12 37 37 H 1.07992 * 119.84383 * 180.02562 * 16 15 14 38 38 H 1.07999 * 119.79696 * 180.28209 * 17 16 15 39 39 H 1.07998 * 119.96126 * 180.02562 * 18 17 16 40 40 H 0.96998 * 119.99271 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9557 0.7809 -0.8907 7 6 4.1138 0.5812 1.2485 8 6 5.6423 0.5514 1.1866 9 9 6.1469 0.0207 2.3786 10 9 6.0500 -0.2458 0.1118 11 7 3.9816 2.6798 -0.0011 12 6 5.1870 3.0260 -0.4949 13 8 5.9298 2.1722 -0.9395 14 6 5.6055 4.4407 -0.4949 15 6 4.7562 5.4245 0.0162 16 6 5.1531 6.7445 0.0139 17 6 6.3925 7.1014 -0.4931 18 6 7.2424 6.1400 -1.0015 19 6 6.8588 4.8057 -1.0083 20 8 7.6921 3.8602 -1.5066 21 6 8.8301 4.2915 -2.0866 22 1 9.0824 5.3416 -2.0659 23 6 9.6768 3.3871 -2.7099 24 7 9.3693 2.1085 -2.7356 25 14 11.2532 3.9848 -3.5142 26 1 12.3575 3.9550 -2.5217 27 1 11.5917 3.1002 -4.6580 28 1 11.0638 5.3744 -4.0023 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 3.7967 1.1282 2.1363 33 1 3.7321 -0.4387 1.2944 34 1 6.0203 1.5649 1.0514 35 1 3.3892 3.3608 0.3539 36 1 3.7895 5.1514 0.4129 37 1 4.4956 7.5041 0.4099 38 1 6.6968 8.1376 -0.4866 39 1 8.2068 6.4261 -1.3945 40 1 9.9613 1.4760 -3.1718 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000762402607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:32:39 Heat of formation + Delta-G solvation = -234.226241 kcal Electronic energy + Delta-G solvation = -30829.713859 eV Core-core repulsion = 26052.977848 eV Total energy + Delta-G solvation = -4776.736010 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.111 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.91569 -47.91425 -42.06907 -41.21131 -39.95982 -38.05476 -37.79834 -36.44236 -34.30916 -33.47212 -31.54468 -30.56367 -29.45294 -27.62089 -27.20974 -24.74161 -23.65280 -23.18410 -22.03382 -21.57862 -19.85972 -19.78198 -18.81741 -18.68750 -18.29996 -18.11107 -17.69879 -17.54047 -16.90744 -16.66206 -16.27197 -16.06492 -15.91771 -15.68232 -15.33297 -15.21791 -14.87433 -14.57277 -14.53247 -14.34691 -14.28153 -14.19428 -13.90439 -13.54560 -13.53356 -13.12262 -13.00375 -12.80313 -12.68691 -12.53096 -12.34118 -12.13047 -12.11299 -11.87369 -11.58430 -11.42618 -10.81335 -10.72975 -10.42188 -9.83717 -9.03917 -8.42386 -6.12975 0.08442 0.73280 0.83185 1.19664 1.34209 1.44805 1.52323 1.97958 2.09648 2.16782 2.78094 2.87809 3.17810 3.25991 3.37064 3.45540 3.53231 3.67651 3.82718 4.05485 4.08331 4.14545 4.28497 4.29380 4.35519 4.48172 4.52899 4.62055 4.65273 4.72929 4.96827 5.07358 5.10118 5.14306 5.19757 5.47536 5.60358 5.70520 5.96690 6.15890 6.39931 6.49259 6.96940 7.28340 7.79783 8.76731 Molecular weight = 343.11amu Principal moments of inertia in cm(-1) A = 0.011227 B = 0.003938 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2493.372715 B = 7108.792021 C = 8504.713799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.352 6.352 3 C 0.482 3.518 4 O -0.510 6.510 5 C 0.157 3.843 6 H 0.116 0.884 7 C -0.160 4.160 8 C 0.260 3.740 9 F -0.214 7.214 10 F -0.210 7.210 11 N -0.713 5.713 12 C 0.553 3.447 13 O -0.536 6.536 14 C -0.245 4.245 15 C -0.029 4.029 16 C -0.202 4.202 17 C -0.037 4.037 18 C -0.258 4.258 19 C 0.155 3.845 20 O -0.183 6.183 21 C -0.427 4.427 22 H 0.106 0.894 23 C -0.018 4.018 24 N -0.898 5.898 25 Si 1.017 2.983 26 H -0.263 1.263 27 H -0.274 1.274 28 H -0.249 1.249 29 H 0.134 0.866 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.130 0.870 33 H 0.132 0.868 34 H 0.091 0.909 35 H 0.418 0.582 36 H 0.155 0.845 37 H 0.161 0.839 38 H 0.153 0.847 39 H 0.124 0.876 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.085 1.930 8.969 19.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.267 6.267 3 C 0.324 3.676 4 O -0.399 6.399 5 C 0.050 3.950 6 H 0.134 0.866 7 C -0.199 4.199 8 C 0.207 3.793 9 F -0.195 7.195 10 F -0.191 7.191 11 N -0.372 5.372 12 C 0.343 3.657 13 O -0.413 6.413 14 C -0.250 4.250 15 C -0.048 4.048 16 C -0.220 4.220 17 C -0.055 4.055 18 C -0.277 4.277 19 C 0.100 3.900 20 O -0.085 6.085 21 C -0.503 4.503 22 H 0.123 0.877 23 C -0.218 4.218 24 N -0.534 5.534 25 Si 0.836 3.164 26 H -0.188 1.188 27 H -0.199 1.199 28 H -0.172 1.172 29 H 0.153 0.847 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.149 0.851 33 H 0.150 0.850 34 H 0.109 0.891 35 H 0.258 0.742 36 H 0.173 0.827 37 H 0.179 0.821 38 H 0.170 0.830 39 H 0.142 0.858 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -16.706 1.088 8.550 18.798 hybrid contribution 0.749 0.156 -0.542 0.938 sum -15.956 1.244 8.007 17.896 Atomic orbital electron populations 1.23700 0.73510 1.06216 1.03138 1.86499 1.25831 1.31219 1.83183 1.22942 0.90361 0.82230 0.72108 1.90666 1.66661 1.36793 1.45740 1.20111 0.88254 0.84910 1.01735 0.86630 1.22987 0.91330 1.06066 0.99521 1.21988 0.94630 0.92199 0.70522 1.92934 1.89499 1.89049 1.48063 1.92977 1.92390 1.76756 1.57022 1.45591 1.18555 1.07579 1.65506 1.18477 0.81015 0.89126 0.77034 1.91053 1.53183 1.51677 1.45434 1.19089 0.95756 0.93313 1.16830 1.21292 0.97535 0.92284 0.93651 1.21150 0.97911 0.96136 1.06839 1.21434 0.92913 0.99300 0.91887 1.21306 1.03249 0.92251 1.10877 1.19989 0.89593 0.89577 0.90877 1.84158 1.28959 1.31951 1.63404 1.21983 0.97022 0.95835 1.35411 0.87663 1.26655 1.03114 0.94872 0.97147 1.70311 1.38447 1.03124 1.41472 0.84621 0.75232 0.78847 0.77673 1.18810 1.19908 1.17226 0.84744 0.90796 0.91796 0.85130 0.85007 0.89119 0.74185 0.82714 0.82126 0.82961 0.85840 0.92102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 113.37 1.20 1.51 16 2 O -0.35 -6.58 10.37 -51.45 -0.53 -7.12 16 3 C 0.48 10.92 7.32 71.24 0.52 11.44 16 4 O -0.51 -12.83 15.59 21.97 0.34 -12.49 16 5 C 0.16 4.20 2.73 44.25 0.12 4.32 16 6 H 0.12 3.70 7.25 -2.39 -0.02 3.68 16 7 C -0.16 -3.79 5.08 30.60 0.16 -3.63 16 8 C 0.26 9.08 4.40 71.98 0.32 9.39 16 9 F -0.21 -7.31 17.34 44.97 0.78 -6.53 16 10 F -0.21 -9.01 15.93 44.97 0.72 -8.29 16 11 N -0.71 -21.16 4.85 -449.26 -2.18 -23.34 16 12 C 0.55 22.83 6.32 86.69 0.55 23.38 16 13 O -0.54 -28.13 11.65 16.90 0.20 -27.93 16 14 C -0.25 -10.05 5.89 -19.99 -0.12 -10.17 16 15 C -0.03 -0.86 9.53 22.52 0.21 -0.64 16 16 C -0.20 -5.28 10.03 22.25 0.22 -5.05 16 17 C -0.04 -1.12 10.03 22.30 0.22 -0.90 16 18 C -0.26 -10.62 9.16 22.36 0.20 -10.42 16 19 C 0.16 7.63 6.66 22.91 0.15 7.79 16 20 O -0.18 -11.12 7.84 0.82 0.01 -11.11 16 21 C -0.43 -25.09 9.49 67.93 0.64 -24.45 16 22 H 0.11 5.57 5.21 -2.91 -0.02 5.55 16 23 C -0.02 -1.04 5.49 84.85 0.47 -0.57 16 24 N -0.90 -57.58 13.67 21.62 0.30 -57.28 16 25 Si 1.02 43.69 29.55 68.60 2.03 45.71 16 26 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 27 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 28 H -0.25 -9.76 7.11 99.48 0.71 -9.05 16 29 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.07 0.76 8.13 -2.38 -0.02 0.74 16 31 H 0.06 0.79 8.13 -2.39 -0.02 0.77 16 32 H 0.13 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.13 2.52 7.99 -2.39 -0.02 2.50 16 34 H 0.09 3.67 5.19 -2.38 -0.01 3.65 16 35 H 0.42 10.06 5.82 -92.71 -0.54 9.52 16 36 H 0.16 3.23 6.40 -2.91 -0.02 3.21 16 37 H 0.16 2.79 8.06 -2.91 -0.02 2.77 16 38 H 0.15 3.37 8.06 -2.91 -0.02 3.35 16 39 H 0.12 5.19 5.64 -2.91 -0.02 5.17 16 40 H 0.27 15.97 8.31 -92.71 -0.77 15.20 16 Total: -1.00 -84.18 351.28 7.11 -77.07 By element: Atomic # 1 Polarization: 28.72 SS G_CDS: 0.59 Total: 29.31 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: 4.87 Total: 2.00 kcal Atomic # 7 Polarization: -78.74 SS G_CDS: -1.89 Total: -80.62 kcal Atomic # 8 Polarization: -58.67 SS G_CDS: 0.01 Total: -58.65 kcal Atomic # 9 Polarization: -16.31 SS G_CDS: 1.50 Total: -14.82 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Total: -84.18 7.11 -77.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762402607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.157 kcal (2) G-P(sol) polarization free energy of solvation -84.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -241.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds