Wall clock time and date at job start Wed Apr 1 2020 02:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35910 * 117.00011 * 2 1 4 4 C 1.38856 * 119.98174 * 359.97438 * 3 2 1 5 5 C 1.38254 * 120.24261 * 179.97438 * 4 3 2 6 6 C 1.37998 * 120.20565 * 0.02562 * 5 4 3 7 7 C 1.39579 * 119.96787 * 0.02562 * 6 5 4 8 8 C 1.47813 * 120.12304 * 180.02562 * 7 6 5 9 9 O 1.21546 * 120.00348 * 179.97438 * 8 7 6 10 10 N 1.34777 * 119.99978 * 0.02562 * 8 7 6 11 11 C 1.39043 * 119.99984 * 185.43915 * 10 8 7 12 12 C 1.40482 * 119.56945 * 175.00064 * 11 10 8 13 13 C 1.38373 * 119.48623 * 179.97438 * 12 11 10 14 14 C 1.38653 * 118.63568 * 359.97438 * 13 12 11 15 15 C 1.40831 * 119.11301 * 0.02562 * 14 13 12 16 16 C 1.40899 * 119.77826 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00359 * 5.72506 * 16 15 14 18 18 C 1.46340 * 119.99399 * 185.72159 * 16 15 14 19 19 N 1.29595 * 120.00579 * 5.56890 * 18 16 15 20 20 Si 1.86807 * 119.99636 * 185.56337 * 18 16 15 21 21 H 1.48499 * 109.47180 * 265.00228 * 20 18 16 22 22 H 1.48501 * 109.47175 * 25.00345 * 20 18 16 23 23 H 1.48501 * 109.46780 * 145.00088 * 20 18 16 24 24 N 1.31485 * 119.56896 * 355.25061 * 11 10 8 25 25 C 1.38447 * 119.98705 * 180.30270 * 3 2 1 26 26 N 1.48019 * 120.10307 * 359.97438 * 25 3 2 27 27 O 1.31703 * 120.00151 * 270.29982 * 26 25 3 28 28 O 1.31697 * 120.00558 * 90.29772 * 26 25 3 29 29 H 1.09001 * 109.47013 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47106 * 300.00219 * 1 2 3 31 31 H 1.09000 * 109.47253 * 60.00076 * 1 2 3 32 32 H 1.08000 * 119.87992 * 0.02562 * 4 3 2 33 33 H 1.07999 * 119.89870 * 180.02562 * 5 4 3 34 34 H 1.08002 * 120.01653 * 179.97438 * 6 5 4 35 35 H 0.96999 * 120.00123 * 5.43172 * 10 8 7 36 36 H 1.08006 * 120.25909 * 359.97438 * 12 11 10 37 37 H 1.07995 * 120.68694 * 179.97438 * 13 12 11 38 38 H 1.07996 * 120.43937 * 180.02562 * 14 13 12 39 39 H 0.96997 * 120.00677 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2893 2.3753 -0.0005 5 6 1.9114 3.6100 0.0000 6 6 3.2888 3.6934 0.0005 7 6 4.0579 2.5286 0.0000 8 6 5.5336 2.6140 0.0011 9 8 6.2011 1.5982 0.0011 10 7 6.1389 3.8181 0.0032 11 6 7.5222 3.9010 -0.1098 12 6 8.1351 5.1609 -0.2129 13 6 9.5119 5.2415 -0.3248 14 6 10.2480 4.0664 -0.3311 15 6 9.5734 2.8348 -0.2244 16 6 10.3074 1.6321 -0.2299 17 1 11.3871 1.6583 -0.2224 18 6 9.6067 0.3475 -0.2457 19 7 8.3166 0.3143 -0.3636 20 14 10.5721 -1.2448 -0.0962 21 1 10.8522 -1.7831 -1.4516 22 1 11.8536 -0.9825 0.6068 23 1 9.7779 -2.2345 0.6752 24 7 8.2393 2.7990 -0.1239 25 6 3.4285 1.2831 -0.0063 26 7 4.2366 0.0430 -0.0125 27 8 4.5965 -0.5142 1.1252 28 8 4.5958 -0.5033 -1.1558 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 0.2110 2.3161 -0.0005 33 1 1.3175 4.5120 0.0000 34 1 3.7716 4.6595 0.0005 35 1 5.6095 4.6270 0.0835 36 1 7.5363 6.0598 -0.2048 37 1 10.0032 6.1998 -0.4056 38 1 11.3241 4.0954 -0.4167 39 1 7.8522 -0.5372 -0.3745 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132801310.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:20:40 Heat of formation + Delta-G solvation = 59.564590 kcal Electronic energy + Delta-G solvation = -29956.894378 eV Core-core repulsion = 25643.587280 eV Total energy + Delta-G solvation = -4313.307098 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.105 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.17403 -39.62150 -38.34666 -37.72194 -37.10375 -34.29155 -33.73984 -33.05295 -32.09100 -31.19441 -30.36736 -28.94807 -28.01275 -26.54053 -25.34689 -24.02069 -22.62210 -21.82684 -21.12089 -19.96868 -18.96375 -17.96677 -17.74230 -17.65298 -17.15470 -16.45168 -16.34181 -15.91790 -15.45200 -15.03789 -14.66898 -14.63696 -14.43325 -14.14659 -13.77138 -13.58736 -13.22633 -12.96292 -12.73769 -12.49634 -12.13696 -12.03893 -11.93096 -11.65039 -11.13276 -10.95366 -10.85339 -10.64906 -10.57794 -10.42836 -10.01597 -10.00054 -9.83654 -9.66337 -9.45666 -9.03265 -9.00585 -8.04795 -7.28197 -7.05103 -6.26773 -4.34740 0.15722 0.32221 0.56209 1.42479 2.43671 2.57230 2.92426 3.14903 3.21977 3.27053 3.32283 3.40402 3.81557 4.07609 4.09630 4.18311 4.40942 4.48894 4.57469 4.63403 4.69126 4.86127 4.97659 5.00201 5.35127 5.45329 5.67282 5.80694 6.01566 6.09496 6.13663 6.45253 6.58303 6.58910 6.77214 6.89809 7.11446 7.15797 7.46514 7.59603 7.84326 7.90789 8.17857 8.37169 8.56226 8.85533 9.08844 10.20909 10.40641 Molecular weight = 343.10amu Principal moments of inertia in cm(-1) A = 0.012428 B = 0.004373 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.354234 B = 6401.916593 C = 8493.834959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.309 6.309 3 C 0.169 3.831 4 C -0.187 4.187 5 C -0.049 4.049 6 C -0.121 4.121 7 C -0.035 4.035 8 C 0.499 3.501 9 O -0.378 6.378 10 N -0.649 5.649 11 C 0.373 3.627 12 C -0.369 4.369 13 C -0.030 4.030 14 C -0.315 4.315 15 C 0.264 3.736 16 C -0.421 4.421 17 H 0.087 0.913 18 C 0.056 3.944 19 N -0.632 5.632 20 Si 0.902 3.098 21 H -0.270 1.270 22 H -0.261 1.261 23 H -0.273 1.273 24 N -0.484 5.484 25 C 0.021 3.979 26 N -0.007 5.007 27 O -0.136 6.136 28 O -0.127 6.127 29 H 0.109 0.891 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.152 0.848 33 H 0.149 0.851 34 H 0.150 0.850 35 H 0.400 0.600 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.910 5.020 0.652 20.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.221 6.221 3 C 0.121 3.879 4 C -0.207 4.207 5 C -0.067 4.067 6 C -0.141 4.141 7 C -0.039 4.039 8 C 0.279 3.721 9 O -0.240 6.240 10 N -0.297 5.297 11 C 0.132 3.868 12 C -0.395 4.395 13 C -0.054 4.054 14 C -0.339 4.339 15 C 0.143 3.857 16 C -0.449 4.449 17 H 0.105 0.895 18 C -0.180 4.180 19 N -0.248 5.248 20 Si 0.725 3.275 21 H -0.195 1.195 22 H -0.185 1.185 23 H -0.197 1.197 24 N -0.203 5.203 25 C -0.063 4.063 26 N 0.490 4.510 27 O -0.340 6.340 28 O -0.334 6.334 29 H 0.128 0.872 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.170 0.830 33 H 0.167 0.833 34 H 0.168 0.832 35 H 0.235 0.765 36 H 0.107 0.893 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -20.349 3.647 0.691 20.685 hybrid contribution 0.315 0.538 0.022 0.624 sum -20.034 4.185 0.713 20.479 Atomic orbital electron populations 1.23253 0.76536 1.05184 1.01900 1.86215 1.23033 1.25161 1.87680 1.18301 0.88482 0.86499 0.94614 1.21350 1.00821 0.90882 1.07627 1.21203 0.94287 0.97720 0.93485 1.21324 0.93787 0.97343 1.01616 1.20273 0.96341 0.90272 0.97057 1.18241 0.85400 0.86186 0.82301 1.91351 1.62362 1.32254 1.38052 1.43032 1.06349 1.07548 1.72738 1.18476 0.82462 0.91101 0.94721 1.20412 0.95117 0.94211 1.29733 1.20512 0.93026 0.96483 0.95355 1.21615 0.98474 0.93464 1.20310 1.18227 0.86883 0.91891 0.88687 1.20838 0.93595 0.88415 1.42058 0.89503 1.27523 0.94850 1.00763 0.94851 1.69462 1.07819 1.28602 1.18915 0.86414 0.80669 0.81184 0.79225 1.19475 1.18476 1.19741 1.68350 1.06584 1.24637 1.20728 1.19369 0.87395 0.83956 1.15546 1.49652 0.97733 1.00875 1.02740 1.96263 1.57634 1.64666 1.15455 1.96268 1.57238 1.65219 1.14636 0.87239 0.91795 0.91780 0.83010 0.83291 0.83198 0.76501 0.89251 0.88713 0.88666 0.90017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.31 -3.87 10.25 -19.46 -0.20 -4.07 16 3 C 0.17 2.18 6.68 -39.28 -0.26 1.92 16 4 C -0.19 -1.54 9.03 -39.35 -0.36 -1.90 16 5 C -0.05 -0.36 10.03 -39.66 -0.40 -0.76 16 6 C -0.12 -1.26 9.53 -39.17 -0.37 -1.63 16 7 C -0.03 -0.56 5.87 -104.99 -0.62 -1.18 16 8 C 0.50 10.61 7.73 -12.34 -0.10 10.51 16 9 O -0.38 -9.96 10.37 -7.63 -0.08 -10.04 16 10 N -0.65 -12.83 5.32 -12.20 -0.06 -12.89 16 11 C 0.37 9.20 7.44 -155.24 -1.15 8.05 16 12 C -0.37 -8.32 9.98 -38.69 -0.39 -8.71 16 13 C -0.03 -0.69 10.15 -39.38 -0.40 -1.09 16 14 C -0.32 -8.12 9.86 -38.45 -0.38 -8.50 16 15 C 0.26 7.59 6.54 -85.01 -0.56 7.03 16 16 C -0.42 -11.82 9.40 -35.32 -0.33 -12.15 16 17 H 0.09 2.28 7.94 -52.49 -0.42 1.86 16 18 C 0.06 1.51 5.65 -15.24 -0.09 1.43 16 19 N -0.63 -18.18 9.26 55.97 0.52 -17.67 16 20 Si 0.90 20.00 29.65 -169.99 -5.04 14.96 16 21 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 22 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 23 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 24 N -0.48 -13.88 5.85 -10.21 -0.06 -13.94 16 25 C 0.02 0.37 6.29 -79.38 -0.50 -0.13 16 26 N -0.01 -0.15 2.70 34.24 0.09 -0.06 16 27 O -0.14 -3.15 19.72 -34.61 -0.68 -3.83 16 28 O -0.13 -2.94 19.73 -34.46 -0.68 -3.62 16 29 H 0.11 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.28 7.66 -51.93 -0.40 -0.12 16 31 H 0.06 0.28 7.66 -51.93 -0.40 -0.12 16 32 H 0.15 0.67 6.28 -52.49 -0.33 0.34 16 33 H 0.15 0.48 8.06 -52.49 -0.42 0.06 16 34 H 0.15 1.13 6.41 -52.49 -0.34 0.79 16 35 H 0.40 5.76 6.75 -40.82 -0.28 5.49 16 36 H 0.09 1.69 8.06 -52.48 -0.42 1.27 16 37 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 38 H 0.10 2.28 8.06 -52.49 -0.42 1.86 16 39 H 0.29 7.97 8.27 -40.82 -0.34 7.63 16 LS Contribution 349.49 15.07 5.27 5.27 Total: -1.00 -38.33 349.49 -9.23 -47.56 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -3.40 Total: 4.28 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -4.90 Total: -5.95 kcal Atomic # 7 Polarization: -45.05 SS G_CDS: 0.49 Total: -44.56 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -1.64 Total: -21.56 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.04 Total: 14.96 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -38.33 -9.23 -47.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132801310.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.126 kcal (2) G-P(sol) polarization free energy of solvation -38.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds