Wall clock time and date at job start Wed Apr 1 2020 02:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35910 * 117.00011 * 2 1 4 4 C 1.38856 * 119.98174 * 359.97438 * 3 2 1 5 5 C 1.38254 * 120.24261 * 179.97438 * 4 3 2 6 6 C 1.37998 * 120.20565 * 0.02562 * 5 4 3 7 7 C 1.39579 * 119.96787 * 0.02562 * 6 5 4 8 8 C 1.47813 * 120.12304 * 180.02562 * 7 6 5 9 9 O 1.21546 * 120.00348 * 179.97438 * 8 7 6 10 10 N 1.34777 * 119.99978 * 0.02562 * 8 7 6 11 11 C 1.39043 * 119.99984 * 185.43915 * 10 8 7 12 12 C 1.40482 * 119.56945 * 175.00064 * 11 10 8 13 13 C 1.38373 * 119.48623 * 179.97438 * 12 11 10 14 14 C 1.38653 * 118.63568 * 359.97438 * 13 12 11 15 15 C 1.40831 * 119.11301 * 0.02562 * 14 13 12 16 16 C 1.40899 * 119.77826 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00359 * 5.72506 * 16 15 14 18 18 C 1.46340 * 119.99399 * 185.72159 * 16 15 14 19 19 N 1.29595 * 120.00579 * 5.56890 * 18 16 15 20 20 Si 1.86807 * 119.99636 * 185.56337 * 18 16 15 21 21 H 1.48499 * 109.47180 * 265.00228 * 20 18 16 22 22 H 1.48501 * 109.47175 * 25.00345 * 20 18 16 23 23 H 1.48501 * 109.46780 * 145.00088 * 20 18 16 24 24 N 1.31485 * 119.56896 * 355.25061 * 11 10 8 25 25 C 1.38447 * 119.98705 * 180.30270 * 3 2 1 26 26 N 1.48019 * 120.10307 * 359.97438 * 25 3 2 27 27 O 1.31703 * 120.00151 * 270.29982 * 26 25 3 28 28 O 1.31697 * 120.00558 * 90.29772 * 26 25 3 29 29 H 1.09001 * 109.47013 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47106 * 300.00219 * 1 2 3 31 31 H 1.09000 * 109.47253 * 60.00076 * 1 2 3 32 32 H 1.08000 * 119.87992 * 0.02562 * 4 3 2 33 33 H 1.07999 * 119.89870 * 180.02562 * 5 4 3 34 34 H 1.08002 * 120.01653 * 179.97438 * 6 5 4 35 35 H 0.96999 * 120.00123 * 5.43172 * 10 8 7 36 36 H 1.08006 * 120.25909 * 359.97438 * 12 11 10 37 37 H 1.07995 * 120.68694 * 179.97438 * 13 12 11 38 38 H 1.07996 * 120.43937 * 180.02562 * 14 13 12 39 39 H 0.96997 * 120.00677 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2893 2.3753 -0.0005 5 6 1.9114 3.6100 0.0000 6 6 3.2888 3.6934 0.0005 7 6 4.0579 2.5286 0.0000 8 6 5.5336 2.6140 0.0011 9 8 6.2011 1.5982 0.0011 10 7 6.1389 3.8181 0.0032 11 6 7.5222 3.9010 -0.1098 12 6 8.1351 5.1609 -0.2129 13 6 9.5119 5.2415 -0.3248 14 6 10.2480 4.0664 -0.3311 15 6 9.5734 2.8348 -0.2244 16 6 10.3074 1.6321 -0.2299 17 1 11.3871 1.6583 -0.2224 18 6 9.6067 0.3475 -0.2457 19 7 8.3166 0.3143 -0.3636 20 14 10.5721 -1.2448 -0.0962 21 1 10.8522 -1.7831 -1.4516 22 1 11.8536 -0.9825 0.6068 23 1 9.7779 -2.2345 0.6752 24 7 8.2393 2.7990 -0.1239 25 6 3.4285 1.2831 -0.0063 26 7 4.2366 0.0430 -0.0125 27 8 4.5965 -0.5142 1.1252 28 8 4.5958 -0.5033 -1.1558 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 0.2110 2.3161 -0.0005 33 1 1.3175 4.5120 0.0000 34 1 3.7716 4.6595 0.0005 35 1 5.6095 4.6270 0.0835 36 1 7.5363 6.0598 -0.2048 37 1 10.0032 6.1998 -0.4056 38 1 11.3241 4.0954 -0.4167 39 1 7.8522 -0.5372 -0.3745 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132801310.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:20:40 Heat of formation + Delta-G solvation = 32.750415 kcal Electronic energy + Delta-G solvation = -29958.057128 eV Core-core repulsion = 25643.587280 eV Total energy + Delta-G solvation = -4314.469847 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.105 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.21404 -41.04143 -39.81788 -39.31136 -38.37803 -36.07168 -35.43425 -34.98337 -33.13327 -32.42525 -32.19652 -30.67645 -28.62264 -27.90610 -27.24776 -25.32550 -23.74091 -23.42567 -22.86145 -21.42643 -20.35605 -19.55425 -19.23851 -18.98854 -18.34270 -17.89287 -17.44265 -17.09000 -16.52708 -16.28999 -16.20059 -16.18713 -16.15942 -15.61727 -15.47067 -14.76044 -14.64069 -14.30893 -13.84956 -13.76212 -13.70167 -13.24529 -12.95896 -12.79018 -12.70539 -12.60779 -12.58435 -12.34303 -12.31169 -12.16518 -11.86874 -11.80062 -11.57531 -11.10864 -10.95420 -10.69752 -10.01442 -9.86832 -9.19995 -8.94312 -8.23738 -6.41283 -1.40298 -0.85481 -0.28612 0.06575 0.91751 1.24604 1.35103 1.49154 1.52017 1.58245 1.78280 2.09362 2.20117 2.37370 2.87907 3.21261 3.40358 3.45062 3.56325 3.81531 3.99626 4.02758 4.19310 4.29537 4.36329 4.52812 4.59092 4.63936 4.70734 4.81005 4.83876 4.90420 4.96798 4.97795 5.10152 5.21035 5.38609 5.65438 5.73037 5.85320 5.92767 6.05258 6.32962 6.49009 6.65230 7.02022 7.31308 8.25832 8.42420 Molecular weight = 343.10amu Principal moments of inertia in cm(-1) A = 0.012428 B = 0.004373 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.354234 B = 6401.916593 C = 8493.834959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.346 6.346 3 C 0.163 3.837 4 C -0.158 4.158 5 C -0.018 4.018 6 C -0.102 4.102 7 C -0.068 4.068 8 C 0.486 3.514 9 O -0.441 6.441 10 N -0.634 5.634 11 C 0.350 3.650 12 C -0.350 4.350 13 C -0.029 4.029 14 C -0.342 4.342 15 C 0.234 3.766 16 C -0.468 4.468 17 H 0.091 0.909 18 C 0.011 3.989 19 N -0.669 5.669 20 Si 0.976 3.024 21 H -0.259 1.259 22 H -0.247 1.247 23 H -0.277 1.277 24 N -0.524 5.524 25 C -0.031 4.031 26 N 0.007 4.993 27 O -0.177 6.177 28 O -0.170 6.170 29 H 0.117 0.883 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.205 0.795 33 H 0.214 0.786 34 H 0.183 0.817 35 H 0.425 0.575 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.102 0.898 39 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.876 9.178 0.724 25.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.259 6.259 3 C 0.115 3.885 4 C -0.177 4.177 5 C -0.036 4.036 6 C -0.121 4.121 7 C -0.073 4.073 8 C 0.269 3.731 9 O -0.307 6.307 10 N -0.284 5.284 11 C 0.110 3.890 12 C -0.375 4.375 13 C -0.052 4.052 14 C -0.365 4.365 15 C 0.112 3.888 16 C -0.497 4.497 17 H 0.109 0.891 18 C -0.220 4.220 19 N -0.285 5.285 20 Si 0.796 3.204 21 H -0.184 1.184 22 H -0.170 1.170 23 H -0.202 1.202 24 N -0.244 5.244 25 C -0.114 4.114 26 N 0.500 4.500 27 O -0.381 6.381 28 O -0.375 6.375 29 H 0.135 0.865 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.222 0.778 33 H 0.231 0.769 34 H 0.200 0.800 35 H 0.265 0.735 36 H 0.156 0.844 37 H 0.157 0.843 38 H 0.120 0.880 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -24.362 7.870 0.759 25.613 hybrid contribution 1.230 -0.425 0.006 1.301 sum -23.133 7.445 0.765 24.313 Atomic orbital electron populations 1.23704 0.73310 1.06764 1.04334 1.86193 1.26421 1.25769 1.87560 1.18637 0.86856 0.88470 0.94548 1.22070 1.02886 0.89115 1.03606 1.21955 0.92913 0.99567 0.89117 1.21825 0.95222 0.96103 0.98956 1.19910 0.93330 0.91929 1.02093 1.19102 0.87839 0.85577 0.80559 1.91343 1.64565 1.34148 1.40686 1.42897 1.04802 1.08649 1.72043 1.19053 0.84392 0.91304 0.94288 1.20968 0.95518 0.94987 1.26043 1.21027 0.93425 0.97318 0.93474 1.21806 0.99182 0.93792 1.21700 1.18722 0.87678 0.93347 0.89074 1.21124 0.93973 0.89511 1.45110 0.89104 1.28438 0.95692 1.04039 0.93869 1.69685 1.09456 1.28415 1.20959 0.85301 0.79270 0.76271 0.79548 1.18362 1.17007 1.20234 1.68331 1.06984 1.27161 1.21902 1.19977 0.88826 0.81777 1.20783 1.50244 0.96390 1.01847 1.01470 1.96216 1.59341 1.66582 1.15914 1.96224 1.59028 1.67145 1.15103 0.86514 0.89169 0.89206 0.77834 0.76880 0.79950 0.73466 0.84384 0.84341 0.87992 0.91181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.81 113.37 1.11 1.22 16 2 O -0.35 -8.40 10.25 -92.53 -0.95 -9.34 16 3 C 0.16 3.93 6.68 22.47 0.15 4.08 16 4 C -0.16 -1.64 9.03 22.42 0.20 -1.44 16 5 C -0.02 -0.13 10.03 22.22 0.22 0.09 16 6 C -0.10 -1.65 9.53 22.54 0.21 -1.43 16 7 C -0.07 -2.18 5.87 -20.10 -0.12 -2.30 16 8 C 0.49 21.56 7.73 86.78 0.67 22.23 16 9 O -0.44 -25.23 10.37 8.53 0.09 -25.14 16 10 N -0.63 -24.82 5.32 -310.78 -1.65 -26.47 16 11 C 0.35 17.41 7.44 133.65 0.99 18.40 16 12 C -0.35 -14.93 9.98 22.85 0.23 -14.70 16 13 C -0.03 -1.27 10.15 22.40 0.23 -1.04 16 14 C -0.34 -17.93 9.86 23.00 0.23 -17.70 16 15 C 0.23 14.15 6.54 40.12 0.26 14.41 16 16 C -0.47 -28.12 9.40 25.03 0.24 -27.88 16 17 H 0.09 5.09 7.94 -2.91 -0.02 5.07 16 18 C 0.01 0.64 5.65 87.13 0.49 1.13 16 19 N -0.67 -42.02 9.26 23.17 0.21 -41.80 16 20 Si 0.98 44.20 29.65 68.60 2.03 46.23 16 21 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 22 H -0.25 -10.46 7.11 99.48 0.71 -9.75 16 23 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 24 N -0.52 -31.65 5.85 -186.21 -1.09 -32.74 16 25 C -0.03 -1.09 6.29 36.74 0.23 -0.86 16 26 N 0.01 0.35 2.70 -45.59 -0.12 0.23 16 27 O -0.18 -9.17 19.72 6.42 0.13 -9.05 16 28 O -0.17 -8.81 19.73 6.28 0.12 -8.68 16 29 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.09 0.35 7.66 -2.39 -0.02 0.33 16 31 H 0.09 0.36 7.66 -2.39 -0.02 0.34 16 32 H 0.20 0.05 6.28 -2.91 -0.02 0.03 16 33 H 0.21 -0.94 8.06 -2.91 -0.02 -0.96 16 34 H 0.18 1.64 6.41 -2.91 -0.02 1.62 16 35 H 0.43 11.04 6.75 -92.71 -0.63 10.41 16 36 H 0.14 4.49 8.06 -2.91 -0.02 4.46 16 37 H 0.14 4.85 8.06 -2.91 -0.02 4.83 16 38 H 0.10 5.02 8.06 -2.91 -0.02 4.99 16 39 H 0.28 17.07 8.27 -92.71 -0.77 16.30 16 Total: -1.00 -100.99 349.49 4.64 -96.34 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: 0.52 Total: 16.21 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: 5.35 Total: -5.79 kcal Atomic # 7 Polarization: -98.13 SS G_CDS: -2.65 Total: -100.78 kcal Atomic # 8 Polarization: -51.60 SS G_CDS: -0.61 Total: -52.21 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -100.99 4.64 -96.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132801310.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.093 kcal (2) G-P(sol) polarization free energy of solvation -100.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds