Wall clock time and date at job start Wed Apr 1 2020 02:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47329 * 30.22006 * 3 2 1 5 5 N 1.46495 * 109.47025 * 179.97438 * 4 3 2 6 6 C 1.46494 * 120.00300 * 274.91799 * 5 4 3 7 7 C 1.50701 * 109.47533 * 270.00251 * 6 5 4 8 8 H 1.08004 * 119.99804 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00230 * 179.97438 * 7 6 5 10 10 N 1.31509 * 120.00062 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99793 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47109 * 90.00052 * 11 9 7 13 13 H 1.48497 * 109.47031 * 209.99596 * 11 9 7 14 14 H 1.48496 * 109.47234 * 330.00026 * 11 9 7 15 15 C 1.34781 * 119.99896 * 94.92441 * 5 4 3 16 16 O 1.21619 * 120.00121 * 185.25618 * 15 5 4 17 17 C 1.47263 * 119.99718 * 5.25049 * 15 5 4 18 18 C 1.38301 * 120.39181 * 75.32254 * 17 15 5 19 19 C 1.41554 * 119.09624 * 179.97438 * 18 17 15 20 20 C 1.40392 * 120.23689 * 180.02562 * 19 18 17 21 21 C 1.37596 * 119.74308 * 180.30066 * 20 19 18 22 22 F 1.35101 * 119.81687 * 179.72042 * 21 20 19 23 23 C 1.39122 * 120.36283 * 359.44338 * 21 20 19 24 24 C 1.37694 * 120.63545 * 0.56429 * 23 21 20 25 25 C 1.39262 * 120.10183 * 359.71577 * 24 23 21 26 26 N 1.37958 * 120.01164 * 179.97438 * 25 24 23 27 27 H 0.97004 * 119.52916 * 0.02562 * 26 25 24 28 28 C 1.34606 * 120.93830 * 180.02562 * 26 25 24 29 29 O 1.21780 * 119.92328 * 179.97438 * 28 26 25 30 30 H 1.08996 * 109.46844 * 270.22206 * 3 2 1 31 31 H 1.08997 * 109.47071 * 150.22255 * 3 2 1 32 32 H 1.09006 * 109.47144 * 59.99744 * 4 3 2 33 33 H 1.08997 * 109.47248 * 300.00141 * 4 3 2 34 34 H 1.09003 * 109.47121 * 30.00362 * 6 5 4 35 35 H 1.09001 * 109.47417 * 149.99955 * 6 5 4 36 36 H 0.97001 * 119.99982 * 180.02562 * 10 9 7 37 37 H 1.07997 * 120.45402 * 0.05960 * 18 17 15 38 38 H 1.07998 * 120.12913 * 0.02772 * 20 19 18 39 39 H 1.08000 * 119.68308 * 180.27799 * 23 21 20 40 40 H 1.08001 * 119.94837 * 179.74628 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1187 -1.2455 -0.7260 5 7 4.5836 -1.2445 -0.7265 6 6 5.3153 -0.5140 -1.7643 7 6 5.5667 -1.4254 -2.9379 8 1 5.2168 -2.4469 -2.9129 9 6 6.2434 -0.9553 -4.0433 10 7 6.6698 0.2884 -4.0735 11 14 6.5556 -2.0854 -5.4976 12 1 5.4251 -1.9838 -6.4551 13 1 7.8150 -1.6844 -6.1746 14 1 6.6749 -3.4861 -5.0194 15 6 5.2583 -1.9158 0.2278 16 8 6.4706 -1.8374 0.2848 17 6 4.5274 -2.7442 1.2016 18 6 4.0107 -3.9714 0.8280 19 6 3.3134 -4.7454 1.7864 20 6 2.7795 -5.9948 1.4331 21 6 2.0982 -6.7359 2.3711 22 9 1.5789 -7.9359 2.0313 23 6 1.9460 -6.2588 3.6691 24 6 2.4633 -5.0354 4.0321 25 6 3.1521 -4.2638 3.0996 26 7 3.6691 -3.0381 3.4652 27 1 3.5493 -2.7205 4.3739 28 6 4.3375 -2.2768 2.5789 29 8 4.7858 -1.1976 2.9214 30 1 2.9713 -0.0032 1.0276 31 1 2.9710 0.8928 -0.5104 32 1 2.7553 -1.2418 -1.7537 33 1 2.7557 -2.1377 -0.2157 34 1 4.7255 0.3430 -2.0897 35 1 6.2676 -0.1681 -1.3624 36 1 7.1456 0.6192 -4.8514 37 1 4.1387 -4.3350 -0.1809 38 1 2.8993 -6.3709 0.4279 39 1 1.4131 -6.8516 4.3978 40 1 2.3352 -4.6740 5.0418 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417618286.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:38:54 Heat of formation + Delta-G solvation = -40.254076 kcal Electronic energy + Delta-G solvation = -29114.432072 eV Core-core repulsion = 24809.169302 eV Total energy + Delta-G solvation = -4305.262770 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.112 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.21681 -41.55601 -39.32384 -38.56263 -36.83256 -35.56959 -35.24226 -34.51708 -32.86682 -30.91326 -30.78773 -29.54920 -27.43336 -25.19179 -23.99805 -23.86326 -23.35208 -22.77176 -20.13717 -18.85605 -18.16727 -18.10264 -17.46230 -16.81377 -16.51109 -16.44978 -16.10794 -15.93225 -15.75325 -15.35560 -15.23785 -14.71506 -14.47428 -14.33171 -14.03378 -13.89383 -13.63749 -13.34003 -13.24915 -12.94286 -12.76566 -12.42810 -12.37837 -12.14525 -11.78892 -11.73417 -11.34934 -11.21149 -11.01165 -10.93136 -10.74857 -10.60022 -10.41077 -10.23191 -9.75938 -9.32043 -8.94640 -8.50041 -8.26202 -7.90488 -6.11279 -4.16889 -0.15035 0.57634 1.38456 2.38984 2.53955 2.74758 2.83825 3.14253 3.26544 3.34270 3.36250 3.38902 3.59079 3.79806 3.97033 4.10416 4.11845 4.34189 4.38560 4.48961 4.60297 4.81961 5.02547 5.06109 5.16668 5.19366 5.24129 5.32825 5.41751 5.50920 5.56984 5.69892 5.80507 5.84371 6.06492 6.17307 6.31647 6.58788 6.89337 7.32481 7.38510 7.59402 7.70691 7.83682 8.12278 8.15461 8.72831 8.89852 9.48624 10.96851 Molecular weight = 343.11amu Principal moments of inertia in cm(-1) A = 0.010128 B = 0.003546 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2764.053037 B = 7893.771162 C = 8708.522531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C 0.219 3.781 3 C -0.052 4.052 4 C 0.116 3.884 5 N -0.585 5.585 6 C 0.244 3.756 7 C -0.533 4.533 8 H 0.059 0.941 9 C 0.064 3.936 10 N -0.891 5.891 11 Si 0.897 3.103 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.572 3.428 16 O -0.512 6.512 17 C -0.189 4.189 18 C -0.005 4.005 19 C -0.096 4.096 20 C -0.086 4.086 21 C 0.066 3.934 22 F -0.137 7.137 23 C -0.096 4.096 24 C -0.136 4.136 25 C 0.182 3.818 26 N -0.626 5.626 27 H 0.419 0.581 28 C 0.550 3.450 29 O -0.507 6.507 30 H 0.107 0.893 31 H 0.120 0.880 32 H 0.096 0.904 33 H 0.073 0.927 34 H 0.039 0.961 35 H 0.050 0.950 36 H 0.265 0.735 37 H 0.156 0.844 38 H 0.152 0.848 39 H 0.145 0.855 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.927 -12.112 15.564 22.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.124 5.124 2 C -0.099 4.099 3 C -0.093 4.093 4 C -0.010 4.010 5 N -0.316 5.316 6 C 0.126 3.874 7 C -0.571 4.571 8 H 0.077 0.923 9 C -0.139 4.139 10 N -0.529 5.529 11 Si 0.725 3.275 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.356 3.644 16 O -0.387 6.387 17 C -0.196 4.196 18 C -0.026 4.026 19 C -0.099 4.099 20 C -0.105 4.105 21 C 0.046 3.954 22 F -0.115 7.115 23 C -0.115 4.115 24 C -0.157 4.157 25 C 0.079 3.921 26 N -0.265 5.265 27 H 0.258 0.742 28 C 0.342 3.658 29 O -0.383 6.383 30 H 0.125 0.875 31 H 0.138 0.862 32 H 0.114 0.886 33 H 0.091 0.909 34 H 0.057 0.943 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.173 0.827 38 H 0.170 0.830 39 H 0.162 0.838 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -11.512 -11.264 15.455 22.322 hybrid contribution 0.409 -0.764 -0.492 0.996 sum -11.103 -12.028 14.963 22.178 Atomic orbital electron populations 1.81189 1.12940 1.08924 1.09319 1.29105 0.95080 0.92970 0.92746 1.19881 0.81328 1.03358 1.04773 1.21331 0.82085 0.95424 1.02145 1.48140 1.04969 1.50268 1.28255 1.19436 0.92883 0.91358 0.83762 1.21390 1.37173 0.98126 1.00441 0.92275 1.24913 0.95206 0.95190 0.98562 1.69919 1.38019 1.14787 1.30186 0.86512 0.77761 0.80953 0.82278 1.20621 1.21086 1.19868 1.17341 0.86897 0.79954 0.80200 1.90829 1.13192 1.62245 1.72388 1.22381 1.04541 0.98222 0.94473 1.21983 0.89659 0.91375 0.99540 1.17333 1.04304 0.96153 0.92099 1.21282 0.96175 0.92685 1.00372 1.17410 1.00623 0.83316 0.94019 1.91531 1.84870 1.42370 1.92779 1.21100 0.99370 0.96069 0.95009 1.20611 1.00883 0.94653 0.99513 1.18024 0.94619 0.85996 0.93461 1.43434 1.50920 1.16697 1.15497 0.74211 1.17928 0.78274 0.84399 0.85156 1.90986 1.47828 1.20566 1.78871 0.87508 0.86221 0.88550 0.90873 0.94335 0.93158 0.92575 0.82675 0.83029 0.83755 0.83764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.84 18.54 42.15 0.78 -6.06 16 2 C 0.22 2.89 15.43 -20.76 -0.32 2.57 16 3 C -0.05 -0.64 6.02 -29.52 -0.18 -0.82 16 4 C 0.12 1.64 5.32 -4.05 -0.02 1.62 16 5 N -0.59 -11.05 2.46 -176.40 -0.43 -11.48 16 6 C 0.24 5.78 5.22 -5.20 -0.03 5.75 16 7 C -0.53 -13.82 9.39 -34.44 -0.32 -14.14 16 8 H 0.06 1.50 7.81 -52.48 -0.41 1.09 16 9 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 10 N -0.89 -25.12 13.29 55.43 0.74 -24.38 16 11 Si 0.90 20.68 29.54 -169.99 -5.02 15.65 16 12 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 13 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 14 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 15 C 0.57 11.28 6.74 -12.59 -0.08 11.19 16 16 O -0.51 -12.61 16.66 5.26 0.09 -12.52 16 17 C -0.19 -2.83 4.35 -102.80 -0.45 -3.27 16 18 C 0.00 -0.05 8.46 -38.30 -0.32 -0.38 16 19 C -0.10 -0.89 5.74 -106.85 -0.61 -1.51 16 20 C -0.09 -0.68 9.74 -39.01 -0.38 -1.06 16 21 C 0.07 0.51 7.28 -39.49 -0.29 0.22 16 22 F -0.14 -1.19 17.26 2.25 0.04 -1.15 16 23 C -0.10 -0.57 9.99 -39.45 -0.39 -0.96 16 24 C -0.14 -0.78 9.85 -39.40 -0.39 -1.17 16 25 C 0.18 1.54 6.64 -83.76 -0.56 0.98 16 26 N -0.63 -5.98 5.30 -10.96 -0.06 -6.04 16 27 H 0.42 2.85 8.75 -40.82 -0.36 2.50 16 28 C 0.55 7.78 7.88 -12.93 -0.10 7.68 16 29 O -0.51 -8.94 17.47 5.12 0.09 -8.85 16 30 H 0.11 1.31 8.14 -51.93 -0.42 0.88 16 31 H 0.12 1.45 8.14 -51.93 -0.42 1.02 16 32 H 0.10 1.36 8.11 -51.93 -0.42 0.94 16 33 H 0.07 0.87 5.76 -51.93 -0.30 0.57 16 34 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 35 H 0.05 1.38 7.35 -51.93 -0.38 1.00 16 36 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 37 H 0.16 1.60 8.06 -52.49 -0.42 1.18 16 38 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 39 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 40 H 0.14 0.42 8.06 -52.49 -0.42 0.00 16 LS Contribution 368.03 15.07 5.55 5.55 Total: -1.00 -35.13 368.03 -6.74 -41.87 By element: Atomic # 1 Polarization: 3.05 SS G_CDS: -3.96 Total: -0.91 kcal Atomic # 6 Polarization: 12.86 SS G_CDS: -4.54 Total: 8.32 kcal Atomic # 7 Polarization: -48.98 SS G_CDS: 1.03 Total: -47.95 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: 0.18 Total: -21.37 kcal Atomic # 9 Polarization: -1.19 SS G_CDS: 0.04 Total: -1.15 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.13 -6.74 -41.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417618286.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.615 kcal (2) G-P(sol) polarization free energy of solvation -35.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds