Wall clock time and date at job start Wed Apr 1 2020 01:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86807 * 119.99647 * 2 1 4 4 H 1.48507 * 109.46581 * 269.99420 * 3 2 1 5 5 H 1.48496 * 109.47073 * 29.99309 * 3 2 1 6 6 H 1.48498 * 109.47263 * 149.99857 * 3 2 1 7 7 C 1.38806 * 120.00516 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00317 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99714 * 0.02562 * 7 2 1 10 10 C 1.46589 * 125.30856 * 179.97438 * 9 7 2 11 11 C 1.53753 * 108.10498 * 181.26141 * 10 9 7 12 12 H 1.09001 * 113.83655 * 251.30788 * 11 10 9 13 13 C 1.55172 * 108.31348 * 124.38125 * 11 10 9 14 14 C 1.54867 * 101.72855 * 285.39264 * 13 11 10 15 15 N 1.47402 * 104.81656 * 322.76638 * 14 13 11 16 16 C 1.34776 * 125.59012 * 204.36101 * 15 14 13 17 17 O 1.21550 * 120.00517 * 180.02562 * 16 15 14 18 18 C 1.47881 * 119.99969 * 0.02814 * 16 15 14 19 19 N 1.32463 * 119.74670 * 0.02562 * 18 16 15 20 20 C 1.31764 * 121.98229 * 179.97438 * 19 18 16 21 21 C 1.37670 * 121.49004 * 359.96750 * 20 19 18 22 22 C 1.41117 * 119.39273 * 0.02999 * 21 20 19 23 23 C 1.44979 * 130.46660 * 179.97438 * 22 21 20 24 24 C 1.32000 * 114.84865 * 180.02562 * 23 22 21 25 25 S 1.75347 * 111.45456 * 359.97438 * 24 23 22 26 26 C 1.40258 * 117.63296 * 359.74752 * 22 21 20 27 27 C 1.46710 * 108.82394 * 24.39797 * 15 14 13 28 28 H 1.09003 * 111.53346 * 236.10861 * 27 15 14 29 29 C 1.46712 * 125.31302 * 359.96832 * 9 7 2 30 30 H 0.96998 * 120.00203 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.74718 * 61.59079 * 10 9 7 32 32 H 1.08998 * 109.74676 * 300.93013 * 10 9 7 33 33 H 1.09001 * 110.97915 * 167.28524 * 13 11 10 34 34 H 1.08995 * 110.98050 * 43.50044 * 13 11 10 35 35 H 1.09001 * 110.37222 * 81.60635 * 14 13 11 36 36 H 1.09005 * 110.36554 * 203.93181 * 14 13 11 37 37 H 1.07998 * 119.25387 * 179.97438 * 20 19 18 38 38 H 1.08005 * 120.30393 * 180.02562 * 21 20 19 39 39 H 1.07998 * 122.57789 * 0.02562 * 23 22 21 40 40 H 1.08005 * 124.27489 * 180.02562 * 24 23 22 41 41 H 1.09008 * 109.98498 * 42.73228 * 29 9 7 42 42 H 1.08993 * 110.02426 * 281.44425 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 2.4977 2.0464 -1.4002 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4404 0.7001 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 1.9381 -3.7199 0.0005 11 6 0.8103 -4.7644 -0.0316 12 1 0.6853 -5.3067 0.9055 13 6 1.0421 -5.6948 -1.2516 14 6 0.6168 -4.7825 -2.4286 15 7 -0.5336 -4.0170 -1.9156 16 6 -1.5037 -3.4605 -2.6677 17 8 -2.4090 -2.8479 -2.1360 18 6 -1.4668 -3.5952 -4.1399 19 7 -0.4783 -4.2643 -4.7141 20 6 -0.4022 -4.4118 -6.0212 21 6 -1.3517 -3.8759 -6.8618 22 6 -2.4316 -3.1511 -6.3143 23 6 -3.5490 -2.4937 -6.9633 24 6 -4.3935 -1.8964 -6.1433 25 16 -3.9017 -2.0803 -4.4703 26 6 -2.4844 -3.0172 -4.9191 27 6 -0.4491 -3.9593 -0.4520 28 1 -1.3519 -4.3511 0.0166 29 6 -0.1351 -2.5239 0.0007 30 1 -0.4850 0.8400 -0.0004 31 1 2.5354 -3.8506 0.9029 32 1 2.5710 -3.8342 -0.8795 33 1 0.4072 -6.5790 -1.1942 34 1 2.0921 -5.9750 -1.3348 35 1 1.4300 -4.1093 -2.6999 36 1 0.3194 -5.3848 -3.2871 37 1 0.4235 -4.9658 -6.4427 38 1 -1.2707 -4.0089 -7.9306 39 1 -3.6803 -2.4928 -8.0353 40 1 -5.2765 -1.3625 -6.4625 41 1 -0.5759 -1.8092 -0.6944 42 1 -0.5255 -2.3562 1.0044 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075906813.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:58:02 Heat of formation + Delta-G solvation = 78.967841 kcal Electronic energy + Delta-G solvation = -28112.490318 eV Core-core repulsion = 24378.610574 eV Total energy + Delta-G solvation = -3733.879744 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 343.110 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.71726 -39.63756 -37.63290 -36.09442 -34.62602 -32.28622 -31.39440 -30.73607 -30.37959 -28.71225 -26.42161 -24.72827 -24.52094 -24.32628 -22.30325 -21.34464 -20.73445 -19.66114 -18.83784 -17.90245 -17.11490 -16.66891 -16.40229 -15.98391 -15.18308 -14.98990 -14.73918 -14.61920 -14.37736 -14.16890 -13.71813 -13.66181 -13.15129 -12.94714 -12.59937 -12.46584 -12.17632 -12.06834 -11.84364 -11.75256 -11.44758 -11.08038 -10.96356 -10.79719 -10.69058 -10.43413 -10.22603 -10.09514 -9.87236 -9.78695 -9.65914 -9.61447 -9.28009 -9.20559 -8.54250 -8.07119 -7.76947 -6.72703 -5.56865 -2.97430 0.34973 0.75865 1.47662 2.03215 2.05921 3.05684 3.31494 3.44584 3.48791 3.51616 3.90330 4.20188 4.33008 4.54708 4.57252 4.75048 4.94918 5.03441 5.06689 5.26573 5.28126 5.36087 5.38164 5.56018 5.62761 5.65852 5.78105 5.88320 5.90616 5.99342 6.09639 6.13653 6.18748 6.39064 6.40785 6.49234 6.62248 6.70790 6.76044 6.95613 7.52332 7.67632 7.72719 7.98994 8.05199 8.46676 8.57180 9.30880 9.92494 10.55314 11.48050 Molecular weight = 343.11amu Principal moments of inertia in cm(-1) A = 0.011103 B = 0.004397 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.309280 B = 6366.801163 C = 7577.636622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.229 4.229 8 H 0.077 0.923 9 N -0.599 5.599 10 C 0.143 3.857 11 C -0.110 4.110 12 H 0.095 0.905 13 C -0.129 4.129 14 C 0.106 3.894 15 N -0.572 5.572 16 C 0.574 3.426 17 O -0.520 6.520 18 C 0.149 3.851 19 N -0.439 5.439 20 C 0.077 3.923 21 C -0.116 4.116 22 C -0.046 4.046 23 C -0.135 4.135 24 C -0.206 4.206 25 S 0.204 5.796 26 C -0.166 4.166 27 C 0.112 3.888 28 H 0.080 0.920 29 C 0.156 3.844 30 H 0.252 0.748 31 H 0.020 0.980 32 H 0.025 0.975 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.098 0.902 37 H 0.165 0.835 38 H 0.141 0.859 39 H 0.146 0.854 40 H 0.170 0.830 41 H 0.106 0.894 42 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.370 -12.107 -14.364 19.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.204 4.204 3 Si 0.741 3.259 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.357 4.357 8 H 0.094 0.906 9 N -0.326 5.326 10 C 0.017 3.983 11 C -0.129 4.129 12 H 0.114 0.886 13 C -0.167 4.167 14 C -0.017 4.017 15 N -0.303 5.303 16 C 0.360 3.640 17 O -0.396 6.396 18 C -0.001 4.001 19 N -0.151 5.151 20 C -0.077 4.077 21 C -0.138 4.138 22 C -0.062 4.062 23 C -0.165 4.165 24 C -0.341 4.341 25 S 0.469 5.531 26 C -0.286 4.286 27 C 0.008 3.992 28 H 0.098 0.902 29 C 0.031 3.969 30 H 0.063 0.937 31 H 0.038 0.962 32 H 0.043 0.957 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.116 0.884 37 H 0.182 0.818 38 H 0.159 0.841 39 H 0.164 0.836 40 H 0.188 0.812 41 H 0.124 0.876 42 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -5.956 -11.361 -12.238 17.728 hybrid contribution 0.596 0.824 -1.996 2.240 sum -5.359 -10.536 -14.233 18.502 Atomic orbital electron populations 1.69907 1.04714 1.24838 1.56693 1.24813 0.95673 0.97627 1.02269 0.86147 0.78558 0.83741 0.77482 1.21748 1.21642 1.20726 1.18998 0.90354 0.82379 1.43962 0.90551 1.44176 1.01549 0.99848 1.86987 1.21157 0.93451 0.85689 0.97985 1.23067 0.95807 0.96156 0.97913 0.88644 1.22896 1.01574 0.97376 0.94891 1.22618 0.88408 0.93905 0.96742 1.47994 1.23508 1.51479 1.07301 1.17233 0.82312 0.80092 0.84336 1.90797 1.35405 1.41393 1.72017 1.20737 0.89946 0.95103 0.94270 1.67913 1.20928 1.13330 1.12961 1.22548 0.98337 0.98353 0.88450 1.22047 0.93374 0.96997 1.01360 1.19489 0.96487 0.99081 0.91143 1.20719 0.93959 1.01046 1.00781 1.25817 1.04164 1.04433 0.99731 1.85238 1.16020 1.50723 1.01091 1.23664 1.02316 1.05464 0.97106 1.22755 0.97109 1.00284 0.79047 0.90188 1.21674 0.84731 0.90550 0.99989 0.93696 0.96187 0.95693 0.91378 0.90145 0.91201 0.88385 0.81752 0.84112 0.83631 0.81231 0.87644 0.95962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.24 10.17 55.49 0.56 -27.68 16 2 C -0.01 -0.22 5.48 -17.43 -0.10 -0.31 16 3 Si 0.91 22.95 29.55 -169.99 -5.02 17.93 16 4 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.23 -6.58 10.25 -15.06 -0.15 -6.74 16 8 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 9 N -0.60 -15.82 3.38 -172.07 -0.58 -16.40 16 10 C 0.14 2.99 6.41 -3.60 -0.02 2.97 16 11 C -0.11 -1.90 4.25 -87.88 -0.37 -2.27 16 12 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 13 C -0.13 -1.80 6.30 -24.60 -0.16 -1.96 16 14 C 0.11 1.74 5.48 -2.56 -0.01 1.72 16 15 N -0.57 -11.31 3.01 -163.36 -0.49 -11.81 16 16 C 0.57 12.00 7.45 -12.31 -0.09 11.91 16 17 O -0.52 -12.14 14.74 5.32 0.08 -12.06 16 18 C 0.15 2.67 6.75 -82.76 -0.56 2.11 16 19 N -0.44 -6.70 6.56 -9.79 -0.06 -6.77 16 20 C 0.08 0.89 11.12 -17.79 -0.20 0.69 16 21 C -0.12 -1.23 10.18 -38.70 -0.39 -1.62 16 22 C -0.05 -0.60 6.10 -105.38 -0.64 -1.24 16 23 C -0.13 -1.43 10.39 -38.83 -0.40 -1.83 16 24 C -0.21 -2.24 11.02 28.82 0.32 -1.92 16 25 S 0.20 3.09 21.43 -107.50 -2.30 0.79 16 26 C -0.17 -2.71 6.33 -37.93 -0.24 -2.95 16 27 C 0.11 2.29 3.66 -66.22 -0.24 2.05 16 28 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 29 C 0.16 4.06 5.17 -3.54 -0.02 4.04 16 30 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 31 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.03 0.52 6.78 -51.93 -0.35 0.16 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.08 0.98 7.96 -51.93 -0.41 0.56 16 35 H 0.07 1.28 7.49 -51.93 -0.39 0.89 16 36 H 0.10 1.44 5.86 -51.93 -0.30 1.14 16 37 H 0.17 1.26 8.06 -52.49 -0.42 0.84 16 38 H 0.14 0.96 8.06 -52.48 -0.42 0.54 16 39 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 40 H 0.17 1.29 8.06 -52.48 -0.42 0.86 16 41 H 0.11 3.18 5.30 -51.92 -0.28 2.91 16 42 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 348.97 15.07 5.26 5.26 Total: -1.00 -35.16 348.97 -10.93 -46.09 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -5.08 Total: -0.03 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: -3.29 Total: 4.66 kcal Atomic # 7 Polarization: -62.08 SS G_CDS: -0.57 Total: -62.65 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.08 Total: -12.06 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.93 kcal Atomic # 16 Polarization: 3.09 SS G_CDS: -2.30 Total: 0.79 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -35.16 -10.93 -46.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075906813.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.062 kcal (2) G-P(sol) polarization free energy of solvation -35.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds