Wall clock time and date at job start Wed Apr 1 2020 03:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35044 * 126.39523 * 2 1 4 4 N 1.30501 * 108.69892 * 179.97438 * 3 2 1 5 5 C 1.34134 * 109.25535 * 359.97438 * 4 3 2 6 6 N 1.48025 * 125.98623 * 180.02562 * 5 4 3 7 7 O 1.21802 * 120.00375 * 359.97172 * 6 5 4 8 8 O 1.21801 * 119.99724 * 179.97438 * 6 5 4 9 9 C 1.34668 * 108.01972 * 0.02562 * 5 4 3 10 10 C 1.50703 * 126.58740 * 179.97438 * 9 5 4 11 11 N 1.46907 * 109.46866 * 270.01856 * 10 9 5 12 12 C 1.46898 * 110.99790 * 180.02562 * 11 10 9 13 13 C 1.53001 * 109.46703 * 180.02562 * 12 11 10 14 14 N 1.46509 * 109.46602 * 180.02562 * 13 12 11 15 15 C 1.34773 * 119.99714 * 180.02562 * 14 13 12 16 16 O 1.21289 * 120.00164 * 0.02562 * 15 14 13 17 17 C 1.50694 * 120.00126 * 179.97438 * 15 14 13 18 18 S 1.81005 * 109.47398 * 180.02562 * 17 15 14 19 19 C 1.76202 * 99.99948 * 180.02562 * 18 17 15 20 20 H 1.07995 * 119.99982 * 359.97438 * 19 18 17 21 21 C 1.38802 * 119.99681 * 180.02562 * 19 18 17 22 22 N 1.31630 * 120.00083 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99563 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47273 * 59.99877 * 23 21 19 25 25 H 1.48499 * 109.46609 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47328 * 299.99656 * 23 21 19 27 27 H 1.09001 * 109.47253 * 269.99983 * 1 2 3 28 28 H 1.08997 * 109.46870 * 30.00133 * 1 2 3 29 29 H 1.09004 * 109.46937 * 150.00289 * 1 2 3 30 30 H 1.07996 * 125.65212 * 0.02562 * 3 2 1 31 31 H 1.08994 * 109.47202 * 30.02117 * 10 9 5 32 32 H 1.09004 * 109.46548 * 150.02454 * 10 9 5 33 33 H 1.00899 * 110.99791 * 303.95942 * 11 10 9 34 34 H 1.08999 * 109.47274 * 300.00589 * 12 11 10 35 35 H 1.09003 * 109.46795 * 60.00705 * 12 11 10 36 36 H 1.09001 * 109.47012 * 299.99603 * 13 12 11 37 37 H 1.08994 * 109.47365 * 60.00533 * 13 12 11 38 38 H 0.97001 * 120.00078 * 359.97438 * 14 13 12 39 39 H 1.09005 * 109.47463 * 300.00351 * 17 15 14 40 40 H 1.09004 * 109.47227 * 60.00257 * 17 15 14 41 41 H 0.96999 * 119.99840 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0870 0.0000 4 7 3.5095 0.6903 0.0006 5 6 3.5460 -0.6505 0.0015 6 7 4.7670 -1.4874 0.0029 7 8 5.8657 -0.9617 0.0027 8 8 4.6729 -2.7017 0.0041 9 6 2.2772 -1.1018 0.0009 10 6 1.8364 -2.5429 0.0011 11 7 1.6943 -3.0116 -1.3839 12 6 1.2642 -4.4157 -1.4230 13 6 1.1282 -4.8670 -2.8786 14 7 0.6987 -6.2671 -2.9175 15 6 0.5125 -6.8821 -4.1022 16 8 0.7011 -6.2766 -5.1361 17 6 0.0713 -8.3225 -4.1424 18 16 -0.0883 -8.8569 -5.8644 19 6 -0.6009 -10.5250 -5.6207 20 1 -0.7218 -10.9121 -4.6198 21 6 -0.8482 -11.3419 -6.7153 22 7 -0.7004 -10.8703 -7.9353 23 14 -1.3909 -13.1106 -6.4570 24 1 -2.6674 -13.1310 -5.6984 25 1 -1.5886 -13.7652 -7.7752 26 1 -0.3489 -13.8415 -5.6922 27 1 -0.3634 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 1.9334 2.1144 0.0004 31 1 2.5807 -3.1505 0.5158 32 1 0.8785 -2.6297 0.5141 33 1 1.0575 -2.4240 -1.9009 34 1 2.0042 -5.0365 -0.9180 35 1 0.3023 -4.5151 -0.9200 36 1 0.3883 -4.2461 -3.3839 37 1 2.0902 -4.7676 -3.3812 38 1 0.5490 -6.7517 -2.0907 39 1 0.8108 -8.9434 -3.6367 40 1 -0.8910 -8.4218 -3.6401 41 1 -0.8736 -11.4410 -8.7002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123787887.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:00 Heat of formation + Delta-G solvation = 34.488872 kcal Electronic energy + Delta-G solvation = -25998.658884 eV Core-core repulsion = 21852.001124 eV Total energy + Delta-G solvation = -4146.657760 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 343.115 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.57666 -41.88817 -39.25483 -37.41122 -36.61357 -35.25515 -34.48618 -32.43657 -32.00154 -30.04631 -28.84178 -28.03571 -26.38768 -25.49775 -24.88315 -22.57816 -22.35130 -21.37754 -20.41686 -19.24062 -18.65147 -17.92741 -17.88019 -17.19839 -16.79350 -16.71817 -16.28180 -16.07246 -15.48899 -15.30880 -14.89108 -14.80840 -14.56351 -14.02930 -13.94531 -13.78099 -13.62715 -13.13314 -13.06613 -12.55687 -12.32906 -11.94898 -11.65938 -11.61036 -11.54168 -11.25049 -11.05642 -11.05229 -11.04345 -10.85581 -10.77877 -9.84308 -9.81294 -9.45734 -9.15508 -9.07378 -8.94658 -8.25210 -6.51173 -6.22225 -3.93145 -0.10648 0.81481 1.00363 1.71332 2.06660 2.88663 3.06775 3.22276 3.23051 3.28105 3.37843 3.55909 3.66347 3.75560 3.83239 3.95525 4.13860 4.19711 4.42257 4.47203 4.54256 4.72663 4.81386 4.89661 5.06087 5.12751 5.13553 5.15816 5.56642 5.67823 5.78100 5.84821 5.87621 6.11651 6.18365 6.19341 6.51363 6.61755 6.63430 7.57322 7.58352 7.64489 8.34187 8.57375 9.22842 10.85124 Molecular weight = 343.11amu Principal moments of inertia in cm(-1) A = 0.024372 B = 0.001605 C = 0.001560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.585972 B =17441.568838 C =17947.539706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.449 5.449 3 C 0.225 3.775 4 N -0.448 5.448 5 C 0.064 3.936 6 N 0.066 4.934 7 O -0.142 6.142 8 O -0.141 6.141 9 C 0.087 3.913 10 C 0.120 3.880 11 N -0.674 5.674 12 C 0.052 3.948 13 C 0.123 3.877 14 N -0.739 5.739 15 C 0.533 3.467 16 O -0.516 6.516 17 C -0.153 4.153 18 S -0.060 6.060 19 C -0.537 4.537 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 H 0.091 0.909 28 H 0.105 0.895 29 H 0.093 0.907 30 H 0.232 0.768 31 H 0.123 0.877 32 H 0.053 0.947 33 H 0.341 0.659 34 H 0.090 0.910 35 H 0.040 0.960 36 H 0.062 0.938 37 H 0.078 0.922 38 H 0.398 0.602 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.322 24.369 22.781 33.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.132 5.132 3 C -0.060 4.060 4 N -0.167 5.167 5 C -0.147 4.147 6 N 0.589 4.411 7 O -0.360 6.360 8 O -0.356 6.356 9 C -0.036 4.036 10 C -0.010 4.010 11 N -0.306 5.306 12 C -0.077 4.077 13 C -0.001 4.001 14 N -0.394 5.394 15 C 0.319 3.681 16 O -0.389 6.389 17 C -0.304 4.304 18 S 0.167 5.833 19 C -0.685 4.685 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.200 1.200 25 H -0.208 1.208 26 H -0.199 1.199 27 H 0.110 0.890 28 H 0.124 0.876 29 H 0.111 0.889 30 H 0.248 0.752 31 H 0.141 0.859 32 H 0.071 0.929 33 H 0.159 0.841 34 H 0.109 0.891 35 H 0.058 0.942 36 H 0.080 0.920 37 H 0.096 0.904 38 H 0.232 0.768 39 H 0.109 0.891 40 H 0.107 0.893 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.380 26.093 20.768 33.351 hybrid contribution -2.000 -2.354 2.011 3.686 sum -2.380 23.739 22.780 32.987 Atomic orbital electron populations 1.22363 0.74076 1.06194 1.05047 1.45629 1.08997 1.05881 1.52652 1.25266 0.83153 0.94349 1.03195 1.69795 1.20763 1.08170 1.17936 1.20382 0.84661 0.90180 1.19484 1.42172 1.00680 1.00501 0.97775 1.94595 1.11975 1.76559 1.52855 1.94562 1.93148 0.94373 1.53518 1.20760 0.88829 0.91185 1.02866 1.20713 1.02076 0.86417 0.91770 1.60218 1.55417 1.03585 1.11347 1.22138 0.99647 0.88660 0.97238 1.21097 1.01303 0.82557 0.95179 1.45871 1.72070 1.12564 1.08920 1.20306 0.76388 0.88550 0.82883 1.90716 1.49049 1.66499 1.32669 1.23528 1.03932 0.94355 1.08559 1.85419 1.88823 1.12459 0.96644 1.22826 1.53245 0.96941 0.95472 0.90954 1.24997 0.94969 0.99184 0.94437 1.70007 1.45764 1.36661 0.97825 0.86219 0.79118 0.82519 0.77611 1.19981 1.20807 1.19903 0.89027 0.87647 0.88866 0.75170 0.85863 0.92930 0.84077 0.89114 0.94163 0.91958 0.90376 0.76825 0.89086 0.89252 0.92111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.06 10.87 59.85 0.65 0.59 16 2 N -0.45 -1.58 3.15 -121.37 -0.38 -1.96 16 3 C 0.23 1.02 12.56 -90.37 -1.14 -0.12 16 4 N -0.45 -4.37 11.23 -11.69 -0.13 -4.50 16 5 C 0.06 0.67 8.02 -145.54 -1.17 -0.50 16 6 N 0.07 0.86 4.45 32.62 0.15 1.01 16 7 O -0.14 -2.09 19.24 -29.46 -0.57 -2.66 16 8 O -0.14 -1.81 16.85 -29.46 -0.50 -2.31 16 9 C 0.09 0.59 6.46 -81.60 -0.53 0.07 16 10 C 0.12 0.66 5.20 -4.97 -0.03 0.63 16 11 N -0.67 -4.48 6.49 -115.05 -0.75 -5.23 16 12 C 0.05 0.35 5.80 -3.82 -0.02 0.33 16 13 C 0.12 1.30 5.94 -4.04 -0.02 1.28 16 14 N -0.74 -9.09 5.56 -60.29 -0.33 -9.43 16 15 C 0.53 9.67 7.85 -10.99 -0.09 9.59 16 16 O -0.52 -11.62 15.86 5.55 0.09 -11.53 16 17 C -0.15 -3.01 6.16 36.00 0.22 -2.79 16 18 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 19 C -0.54 -15.18 9.50 30.94 0.29 -14.89 16 20 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 21 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -26.08 13.22 55.49 0.73 -25.35 16 23 Si 0.92 21.26 29.55 -169.99 -5.02 16.24 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 26 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 27 H 0.09 -0.19 8.14 -51.93 -0.42 -0.62 16 28 H 0.10 -0.31 8.14 -51.93 -0.42 -0.73 16 29 H 0.09 -0.11 7.81 -51.93 -0.41 -0.51 16 30 H 0.23 -0.09 8.06 -52.49 -0.42 -0.51 16 31 H 0.12 0.83 6.40 -51.93 -0.33 0.49 16 32 H 0.05 0.15 7.87 -51.93 -0.41 -0.26 16 33 H 0.34 1.87 8.72 -39.29 -0.34 1.53 16 34 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.40 3.59 8.47 -40.82 -0.35 3.24 16 39 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 40 H 0.09 1.60 8.14 -51.91 -0.42 1.17 16 41 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 379.93 15.07 5.73 5.73 Total: -1.00 -40.36 379.93 -10.30 -50.66 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: -5.18 Total: -3.02 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: -1.92 Total: -3.81 kcal Atomic # 7 Polarization: -44.74 SS G_CDS: -0.72 Total: -45.46 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: -0.98 Total: -16.50 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -40.36 -10.30 -50.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123787887.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.150 kcal (2) G-P(sol) polarization free energy of solvation -40.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds