Wall clock time and date at job start Wed Apr 1 2020 01:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48501 * 109.47088 * 270.27618 * 3 2 1 5 5 H 1.48495 * 109.47293 * 30.27820 * 3 2 1 6 6 H 1.48507 * 109.47015 * 150.27778 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 C 1.50697 * 109.47266 * 180.02562 * 9 7 2 11 11 O 1.21282 * 119.99595 * 359.97438 * 10 9 7 12 12 N 1.34773 * 119.99843 * 179.97438 * 10 9 7 13 13 C 1.47048 * 120.85148 * 359.72046 * 12 10 9 14 14 C 1.53916 * 109.14074 * 115.91893 * 13 12 10 15 15 C 1.50563 * 108.73321 * 45.48475 * 14 13 12 16 16 O 1.33288 * 129.35631 * 162.12113 * 15 14 13 17 17 N 1.21412 * 111.62338 * 179.79333 * 16 15 14 18 18 C 1.31510 * 111.52582 * 0.08200 * 17 16 15 19 19 C 1.48332 * 127.17854 * 180.02562 * 18 17 16 20 20 O 1.21500 * 119.99837 * 179.97438 * 19 18 17 21 21 N 1.34779 * 120.00009 * 359.96044 * 19 18 17 22 22 C 1.46496 * 119.99745 * 180.02562 * 21 19 18 23 23 C 1.53006 * 109.46964 * 180.02562 * 22 21 19 24 24 F 1.39904 * 109.46717 * 299.99740 * 23 22 21 25 25 F 1.39905 * 109.47044 * 59.99690 * 23 22 21 26 26 C 1.35383 * 124.16202 * 342.05393 * 15 14 13 27 27 C 1.47627 * 120.84345 * 179.97438 * 12 10 9 28 28 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 29 29 H 1.09004 * 109.46932 * 300.00367 * 9 7 2 30 30 H 1.08997 * 109.47392 * 59.99705 * 9 7 2 31 31 H 1.08998 * 109.48127 * 235.89775 * 13 12 10 32 32 H 1.09000 * 109.47927 * 355.93657 * 13 12 10 33 33 H 1.08992 * 109.69466 * 285.65231 * 14 13 12 34 34 H 1.09006 * 109.62873 * 165.27301 * 14 13 12 35 35 H 0.96999 * 119.99470 * 359.97438 * 21 19 18 36 36 H 1.08999 * 109.47062 * 299.99656 * 22 21 19 37 37 H 1.09000 * 109.47347 * 59.99754 * 22 21 19 38 38 H 1.08996 * 109.46895 * 179.97438 * 23 22 21 39 39 H 1.08990 * 109.94282 * 343.02462 * 27 12 10 40 40 H 1.09005 * 109.93710 * 104.25919 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4909 2.0497 -1.4001 5 1 1.4497 2.6509 0.7059 6 1 3.5497 1.4383 0.6942 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 6 2.2302 -3.6447 -0.0121 11 8 3.4226 -3.4230 -0.0166 12 7 1.7809 -4.9153 -0.0127 13 6 0.3394 -5.2054 -0.0011 14 6 -0.0414 -5.9234 -1.3082 15 6 0.9747 -7.0001 -1.5822 16 8 0.8898 -8.0563 -2.3907 17 7 1.9069 -8.7190 -2.3693 18 6 2.8005 -8.2052 -1.5526 19 6 4.1573 -8.7303 -1.2634 20 8 4.8805 -8.1466 -0.4808 21 7 4.5878 -9.8550 -1.8686 22 6 5.9276 -10.3738 -1.5825 23 6 6.1646 -11.6492 -2.3939 24 9 5.2084 -12.6087 -2.0442 25 9 6.0579 -11.3602 -3.7586 26 6 2.2005 -7.0520 -1.0099 27 6 2.7235 -6.0514 -0.0193 28 1 -0.4849 0.8401 0.0041 29 1 0.6280 -2.5591 0.8866 30 1 0.6206 -2.5548 -0.8933 31 1 0.1041 -5.8449 0.8496 32 1 -0.2185 -4.2724 0.0799 33 1 -0.0479 -5.2089 -2.1313 34 1 -1.0299 -6.3713 -1.2054 35 1 4.0101 -10.3213 -2.4929 36 1 6.6725 -9.6264 -1.8554 37 1 6.0108 -10.5985 -0.5192 38 1 7.1616 -12.0349 -2.1814 39 1 3.7137 -5.7112 -0.3223 40 1 2.7711 -6.5007 0.9727 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269024708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:34 Heat of formation + Delta-G solvation = -106.542477 kcal Electronic energy + Delta-G solvation = -29526.715408 eV Core-core repulsion = 24787.808932 eV Total energy + Delta-G solvation = -4738.906476 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.118 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.54805 -47.53815 -45.26845 -39.96891 -39.32084 -36.58171 -35.46417 -34.22345 -33.01281 -32.36591 -30.95322 -30.01998 -28.99021 -26.50691 -25.11737 -23.94111 -23.43581 -22.98324 -21.36549 -20.75025 -18.95344 -18.10205 -18.07433 -17.94035 -17.62448 -17.09884 -16.60698 -16.37346 -15.85129 -15.60799 -15.48935 -15.37285 -15.22026 -14.45576 -14.40368 -14.37592 -13.90020 -13.85631 -13.50310 -13.43060 -13.11618 -13.01469 -12.90199 -12.67295 -12.21210 -11.86467 -11.72365 -11.54158 -11.51231 -11.22257 -10.79956 -10.69261 -10.66821 -10.51696 -9.99081 -9.75441 -9.26932 -9.24485 -8.73971 -8.48116 -8.36894 -6.10124 -4.09246 0.82968 1.47532 2.32148 2.68266 2.82746 3.07259 3.30372 3.33508 3.39157 3.47804 3.55529 3.57902 3.66457 3.95955 4.15545 4.31939 4.45549 4.65296 4.74475 4.86363 4.91042 4.97482 5.12698 5.22311 5.28822 5.36654 5.53779 5.65046 5.66778 5.72090 5.88836 5.94673 6.21107 6.78712 6.81469 7.08146 7.23683 7.56025 7.79853 7.84188 7.93419 8.29225 9.01215 9.08888 9.56115 11.02147 Molecular weight = 343.12amu Principal moments of inertia in cm(-1) A = 0.019780 B = 0.002333 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.243818 B =12000.062964 C =12896.117006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.056 3.944 3 Si 0.901 3.099 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.509 4.509 8 H 0.075 0.925 9 C 0.009 3.991 10 C 0.520 3.480 11 O -0.535 6.535 12 N -0.636 5.636 13 C 0.113 3.887 14 C -0.056 4.056 15 C -0.015 4.015 16 O 0.129 5.871 17 N -0.340 5.340 18 C -0.013 4.013 19 C 0.608 3.392 20 O -0.505 6.505 21 N -0.719 5.719 22 C 0.070 3.930 23 C 0.255 3.745 24 F -0.200 7.200 25 F -0.200 7.200 26 C -0.167 4.167 27 C 0.190 3.810 28 H 0.262 0.738 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.074 0.926 32 H 0.118 0.882 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.412 0.588 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.131 0.869 39 H 0.111 0.889 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.461 -24.568 -3.733 25.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.145 4.145 3 Si 0.729 3.271 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.548 4.548 8 H 0.093 0.907 9 C -0.030 4.030 10 C 0.312 3.688 11 O -0.409 6.409 12 N -0.373 5.373 13 C -0.011 4.011 14 C -0.095 4.095 15 C -0.080 4.080 16 O 0.056 5.944 17 N -0.043 5.043 18 C -0.171 4.171 19 C 0.392 3.608 20 O -0.378 6.378 21 N -0.374 5.374 22 C -0.054 4.054 23 C 0.201 3.799 24 F -0.182 7.182 25 F -0.181 7.181 26 C -0.173 4.173 27 C 0.067 3.933 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.092 0.908 32 H 0.136 0.864 33 H 0.124 0.876 34 H 0.123 0.877 35 H 0.248 0.752 36 H 0.123 0.877 37 H 0.123 0.877 38 H 0.148 0.852 39 H 0.129 0.871 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.573 -24.969 -3.944 25.689 hybrid contribution 0.134 0.887 -0.063 0.899 sum 4.708 -24.082 -4.007 24.863 Atomic orbital electron populations 1.69941 1.05990 1.26990 1.51099 1.24986 0.94929 0.99460 0.95111 0.86430 0.79905 0.82599 0.78189 1.20609 1.21246 1.19652 1.21174 0.94315 0.89070 1.50220 0.90691 1.19271 0.94078 0.90281 0.99408 1.22147 0.91164 0.82642 0.72841 1.90561 1.18076 1.83758 1.48549 1.48691 1.05791 1.05966 1.76836 1.21833 0.82352 1.02096 0.94859 1.20906 0.95454 0.92215 1.00893 1.24145 0.98240 0.91679 0.93907 1.84673 1.30794 1.28964 1.49996 1.74516 0.94312 1.16863 1.18562 1.22628 0.96817 0.97339 1.00360 1.16765 0.83652 0.79987 0.80389 1.90865 1.54893 1.57797 1.34210 1.45543 1.16936 1.27296 1.47586 1.22591 0.86270 0.94817 1.01761 1.22256 0.93233 0.87216 0.77238 1.93033 1.67680 1.65762 1.91694 1.93040 1.97145 1.93933 1.33978 1.21004 0.94310 0.98154 1.03851 1.19713 0.94813 0.83455 0.95292 0.92861 0.93225 0.93279 0.90793 0.86441 0.87649 0.87664 0.75172 0.87663 0.87706 0.85186 0.87120 0.90011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.43 13.29 55.43 0.74 -24.69 16 2 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.51 -14.41 8.92 -34.44 -0.31 -14.72 16 8 H 0.07 2.24 6.75 -52.49 -0.35 1.89 16 9 C 0.01 0.21 3.81 -29.04 -0.11 0.10 16 10 C 0.52 11.60 7.70 -10.99 -0.08 11.52 16 11 O -0.53 -13.95 14.99 5.56 0.08 -13.87 16 12 N -0.64 -10.91 2.95 -173.42 -0.51 -11.42 16 13 C 0.11 1.41 6.31 -3.27 -0.02 1.39 16 14 C -0.06 -0.57 6.48 -27.47 -0.18 -0.75 16 15 C -0.02 -0.19 7.40 -35.39 -0.26 -0.45 16 16 O 0.13 1.59 11.18 18.96 0.21 1.80 16 17 N -0.34 -4.43 11.89 33.28 0.40 -4.04 16 18 C -0.01 -0.19 7.19 -82.85 -0.60 -0.78 16 19 C 0.61 8.06 7.85 -12.11 -0.10 7.96 16 20 O -0.51 -7.95 16.30 5.37 0.09 -7.86 16 21 N -0.72 -7.09 5.41 -61.09 -0.33 -7.42 16 22 C 0.07 0.46 5.91 -4.04 -0.02 0.44 16 23 C 0.25 1.29 5.42 37.16 0.20 1.50 16 24 F -0.20 -1.48 17.20 2.25 0.04 -1.44 16 25 F -0.20 -1.54 17.20 2.25 0.04 -1.50 16 26 C -0.17 -2.42 6.14 -104.89 -0.64 -3.07 16 27 C 0.19 3.10 6.04 -4.82 -0.03 3.08 16 28 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 29 H 0.05 1.19 7.74 -51.93 -0.40 0.79 16 30 H 0.05 1.17 7.92 -51.93 -0.41 0.76 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.12 1.52 5.94 -51.93 -0.31 1.21 16 33 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.41 3.85 8.13 -40.82 -0.33 3.51 16 36 H 0.11 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.13 0.14 8.14 -51.93 -0.42 -0.28 16 39 H 0.11 2.11 7.17 -51.93 -0.37 1.74 16 40 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 LS Contribution 354.84 15.07 5.35 5.35 Total: -1.00 -35.22 354.84 -5.44 -40.66 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -4.27 Total: -0.02 kcal Atomic # 6 Polarization: 9.92 SS G_CDS: -2.25 Total: 7.67 kcal Atomic # 7 Polarization: -47.86 SS G_CDS: 0.29 Total: -47.57 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: 0.38 Total: -19.93 kcal Atomic # 9 Polarization: -3.01 SS G_CDS: 0.08 Total: -2.94 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -35.22 -5.44 -40.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269024708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.882 kcal (2) G-P(sol) polarization free energy of solvation -35.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds