Wall clock time and date at job start Wed Apr 1 2020 01:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48501 * 109.47088 * 270.27618 * 3 2 1 5 5 H 1.48495 * 109.47293 * 30.27820 * 3 2 1 6 6 H 1.48507 * 109.47015 * 150.27778 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 C 1.50697 * 109.47266 * 180.02562 * 9 7 2 11 11 O 1.21282 * 119.99595 * 359.97438 * 10 9 7 12 12 N 1.34773 * 119.99843 * 179.97438 * 10 9 7 13 13 C 1.47048 * 120.85148 * 359.72046 * 12 10 9 14 14 C 1.53916 * 109.14074 * 115.91893 * 13 12 10 15 15 C 1.50563 * 108.73321 * 45.48475 * 14 13 12 16 16 O 1.33288 * 129.35631 * 162.12113 * 15 14 13 17 17 N 1.21412 * 111.62338 * 179.79333 * 16 15 14 18 18 C 1.31510 * 111.52582 * 0.08200 * 17 16 15 19 19 C 1.48332 * 127.17854 * 180.02562 * 18 17 16 20 20 O 1.21500 * 119.99837 * 179.97438 * 19 18 17 21 21 N 1.34779 * 120.00009 * 359.96044 * 19 18 17 22 22 C 1.46496 * 119.99745 * 180.02562 * 21 19 18 23 23 C 1.53006 * 109.46964 * 180.02562 * 22 21 19 24 24 F 1.39904 * 109.46717 * 299.99740 * 23 22 21 25 25 F 1.39905 * 109.47044 * 59.99690 * 23 22 21 26 26 C 1.35383 * 124.16202 * 342.05393 * 15 14 13 27 27 C 1.47627 * 120.84345 * 179.97438 * 12 10 9 28 28 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 29 29 H 1.09004 * 109.46932 * 300.00367 * 9 7 2 30 30 H 1.08997 * 109.47392 * 59.99705 * 9 7 2 31 31 H 1.08998 * 109.48127 * 235.89775 * 13 12 10 32 32 H 1.09000 * 109.47927 * 355.93657 * 13 12 10 33 33 H 1.08992 * 109.69466 * 285.65231 * 14 13 12 34 34 H 1.09006 * 109.62873 * 165.27301 * 14 13 12 35 35 H 0.96999 * 119.99470 * 359.97438 * 21 19 18 36 36 H 1.08999 * 109.47062 * 299.99656 * 22 21 19 37 37 H 1.09000 * 109.47347 * 59.99754 * 22 21 19 38 38 H 1.08996 * 109.46895 * 179.97438 * 23 22 21 39 39 H 1.08990 * 109.94282 * 343.02462 * 27 12 10 40 40 H 1.09005 * 109.93710 * 104.25919 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4909 2.0497 -1.4001 5 1 1.4497 2.6509 0.7059 6 1 3.5497 1.4383 0.6942 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 6 2.2302 -3.6447 -0.0121 11 8 3.4226 -3.4230 -0.0166 12 7 1.7809 -4.9153 -0.0127 13 6 0.3394 -5.2054 -0.0011 14 6 -0.0414 -5.9234 -1.3082 15 6 0.9747 -7.0001 -1.5822 16 8 0.8898 -8.0563 -2.3907 17 7 1.9069 -8.7190 -2.3693 18 6 2.8005 -8.2052 -1.5526 19 6 4.1573 -8.7303 -1.2634 20 8 4.8805 -8.1466 -0.4808 21 7 4.5878 -9.8550 -1.8686 22 6 5.9276 -10.3738 -1.5825 23 6 6.1646 -11.6492 -2.3939 24 9 5.2084 -12.6087 -2.0442 25 9 6.0579 -11.3602 -3.7586 26 6 2.2005 -7.0520 -1.0099 27 6 2.7235 -6.0514 -0.0193 28 1 -0.4849 0.8401 0.0041 29 1 0.6280 -2.5591 0.8866 30 1 0.6206 -2.5548 -0.8933 31 1 0.1041 -5.8449 0.8496 32 1 -0.2185 -4.2724 0.0799 33 1 -0.0479 -5.2089 -2.1313 34 1 -1.0299 -6.3713 -1.2054 35 1 4.0101 -10.3213 -2.4929 36 1 6.6725 -9.6264 -1.8554 37 1 6.0108 -10.5985 -0.5192 38 1 7.1616 -12.0349 -2.1814 39 1 3.7137 -5.7112 -0.3223 40 1 2.7711 -6.5007 0.9727 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269024708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:33 Heat of formation + Delta-G solvation = -131.701745 kcal Electronic energy + Delta-G solvation = -29527.806395 eV Core-core repulsion = 24787.808932 eV Total energy + Delta-G solvation = -4739.997464 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.04583 -48.05133 -46.32396 -41.01125 -40.81929 -38.03117 -36.32455 -35.33540 -35.05637 -33.65014 -32.09663 -30.87366 -30.65278 -27.91857 -26.07206 -25.34013 -24.96652 -23.63895 -22.52318 -21.82378 -20.16403 -19.15703 -18.84941 -18.60711 -18.52956 -18.45437 -18.13429 -17.26540 -17.08669 -17.00806 -16.66723 -16.48729 -16.45416 -16.18710 -15.34986 -15.07158 -15.02882 -14.71046 -14.53366 -14.42934 -14.41671 -14.14644 -14.07369 -13.88467 -13.51938 -13.18277 -12.97783 -12.81319 -12.70863 -12.57827 -12.49147 -12.23647 -12.02676 -11.70451 -11.60963 -11.35150 -10.59404 -10.57963 -10.55116 -10.30855 -9.81557 -8.23373 -6.28863 -0.19681 0.40720 1.41571 1.42084 1.47264 1.54239 1.65359 1.78588 1.86162 1.94013 2.44804 2.59592 2.64695 3.12312 3.22350 3.32388 3.49577 3.54461 3.71091 3.82666 3.91524 4.04272 4.14397 4.25379 4.41152 4.42143 4.43062 4.48338 4.58441 4.74753 4.85583 4.89164 5.02093 5.07703 5.30090 5.47407 5.76448 5.90979 6.04974 6.48578 6.61223 6.77933 6.82489 7.33145 7.43041 8.88112 Molecular weight = 343.12amu Principal moments of inertia in cm(-1) A = 0.019780 B = 0.002333 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.243818 B =12000.062964 C =12896.117006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.017 3.983 3 Si 0.957 3.043 4 H -0.273 1.273 5 H -0.272 1.272 6 H -0.279 1.279 7 C -0.540 4.540 8 H 0.048 0.952 9 C 0.018 3.982 10 C 0.521 3.479 11 O -0.585 6.585 12 N -0.626 5.626 13 C 0.102 3.898 14 C -0.049 4.049 15 C 0.004 3.996 16 O 0.141 5.859 17 N -0.338 5.338 18 C -0.022 4.022 19 C 0.603 3.397 20 O -0.539 6.539 21 N -0.708 5.708 22 C 0.062 3.938 23 C 0.258 3.742 24 F -0.213 7.213 25 F -0.215 7.215 26 C -0.195 4.195 27 C 0.199 3.801 28 H 0.268 0.732 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.104 0.896 32 H 0.115 0.885 33 H 0.108 0.892 34 H 0.154 0.846 35 H 0.415 0.585 36 H 0.110 0.890 37 H 0.116 0.884 38 H 0.180 0.820 39 H 0.076 0.924 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.281 -25.826 -4.151 26.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.182 4.182 3 Si 0.782 3.218 4 H -0.199 1.199 5 H -0.197 1.197 6 H -0.204 1.204 7 C -0.578 4.578 8 H 0.067 0.933 9 C -0.021 4.021 10 C 0.312 3.688 11 O -0.464 6.464 12 N -0.360 5.360 13 C -0.019 4.019 14 C -0.088 4.088 15 C -0.061 4.061 16 O 0.067 5.933 17 N -0.040 5.040 18 C -0.180 4.180 19 C 0.388 3.612 20 O -0.415 6.415 21 N -0.361 5.361 22 C -0.062 4.062 23 C 0.204 3.796 24 F -0.195 7.195 25 F -0.197 7.197 26 C -0.201 4.201 27 C 0.076 3.924 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.122 0.878 32 H 0.133 0.867 33 H 0.126 0.874 34 H 0.172 0.828 35 H 0.252 0.748 36 H 0.128 0.872 37 H 0.134 0.866 38 H 0.197 0.803 39 H 0.094 0.906 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.342 -26.306 -4.389 26.879 hybrid contribution 0.455 1.190 0.052 1.275 sum 3.797 -25.116 -4.337 25.769 Atomic orbital electron populations 1.69983 1.06695 1.28041 1.50944 1.25644 0.95852 1.02194 0.94547 0.85573 0.78525 0.79233 0.78465 1.19866 1.19690 1.20413 1.21363 0.93528 0.91543 1.51386 0.93333 1.19075 0.93938 0.89682 0.99437 1.21782 0.89991 0.84105 0.72878 1.90535 1.19740 1.84911 1.51226 1.48553 1.08218 1.04515 1.74763 1.22224 0.79052 1.03045 0.97617 1.21022 0.96956 0.91430 0.99360 1.24449 0.97761 0.91429 0.92431 1.84678 1.30374 1.28685 1.49573 1.74504 0.94329 1.16913 1.18290 1.22771 0.97338 0.97372 1.00474 1.16831 0.83403 0.80613 0.80394 1.90847 1.55681 1.58996 1.35937 1.45581 1.18127 1.26020 1.46416 1.22908 0.84559 0.95767 1.02941 1.22668 0.94882 0.86137 0.75881 1.93008 1.68593 1.66144 1.91726 1.93010 1.97288 1.94038 1.35337 1.20857 0.95632 0.98630 1.05012 1.19514 0.93108 0.83287 0.96490 0.92320 0.93029 0.92919 0.87770 0.86655 0.87401 0.82829 0.74829 0.87175 0.86616 0.80327 0.90594 0.89030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.26 13.29 21.45 0.28 -50.98 16 2 C 0.02 0.95 5.46 84.66 0.46 1.41 16 3 Si 0.96 44.76 29.54 68.60 2.03 46.78 16 4 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 5 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 6 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 7 C -0.54 -31.26 8.92 25.60 0.23 -31.03 16 8 H 0.05 3.02 6.75 -2.91 -0.02 3.00 16 9 C 0.02 0.87 3.81 29.10 0.11 0.98 16 10 C 0.52 23.87 7.70 87.66 0.68 24.55 16 11 O -0.58 -32.07 14.99 -3.03 -0.05 -32.12 16 12 N -0.63 -21.41 2.95 -820.98 -2.42 -23.83 16 13 C 0.10 2.34 6.31 86.58 0.55 2.88 16 14 C -0.05 -0.85 6.48 30.11 0.20 -0.65 16 15 C 0.00 0.09 7.40 24.98 0.18 0.28 16 16 O 0.14 3.14 11.18 77.86 0.87 4.01 16 17 N -0.34 -8.37 11.89 -48.98 -0.58 -8.95 16 18 C -0.02 -0.59 7.19 42.53 0.31 -0.29 16 19 C 0.60 16.12 7.85 86.93 0.68 16.80 16 20 O -0.54 -17.51 16.30 -3.72 -0.06 -17.57 16 21 N -0.71 -13.62 5.41 -465.49 -2.52 -16.14 16 22 C 0.06 0.75 5.91 86.38 0.51 1.26 16 23 C 0.26 2.13 5.42 71.98 0.39 2.52 16 24 F -0.21 -2.81 17.20 44.97 0.77 -2.04 16 25 F -0.22 -3.03 17.20 44.97 0.77 -2.26 16 26 C -0.19 -5.54 6.14 -20.04 -0.12 -5.66 16 27 C 0.20 6.62 6.04 85.26 0.52 7.13 16 28 H 0.27 14.07 8.31 -92.71 -0.77 13.30 16 29 H 0.05 2.48 7.74 -2.38 -0.02 2.46 16 30 H 0.05 2.51 7.92 -2.39 -0.02 2.49 16 31 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.12 2.76 5.94 -2.39 -0.01 2.75 16 33 H 0.11 1.93 8.14 -2.39 -0.02 1.92 16 34 H 0.15 1.28 8.14 -2.38 -0.02 1.26 16 35 H 0.42 7.45 8.13 -92.71 -0.75 6.70 16 36 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.18 -0.20 8.14 -2.39 -0.02 -0.21 16 39 H 0.08 3.08 7.17 -2.39 -0.02 3.06 16 40 H 0.09 2.81 8.14 -2.38 -0.02 2.79 16 Total: -1.00 -78.87 354.84 4.15 -74.72 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: 0.37 Total: 8.19 kcal Atomic # 6 Polarization: 15.50 SS G_CDS: 4.68 Total: 20.18 kcal Atomic # 7 Polarization: -94.66 SS G_CDS: -5.24 Total: -99.90 kcal Atomic # 8 Polarization: -46.44 SS G_CDS: 0.76 Total: -45.68 kcal Atomic # 9 Polarization: -5.84 SS G_CDS: 1.55 Total: -4.30 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -78.87 4.15 -74.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269024708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.978 kcal (2) G-P(sol) polarization free energy of solvation -78.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds