Wall clock time and date at job start Wed Apr 1 2020 02:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09008 * 109.46563 * 2 1 4 4 C 1.52995 * 109.47234 * 240.00509 * 2 1 3 5 5 N 1.46906 * 109.47244 * 184.99960 * 4 2 1 6 6 C 1.46903 * 111.00105 * 179.97438 * 5 4 2 7 7 C 1.50698 * 109.46776 * 179.97438 * 6 5 4 8 8 O 1.21295 * 120.00151 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99774 * 179.97438 * 7 6 5 10 10 C 1.37103 * 120.00034 * 179.97438 * 9 7 6 11 11 H 1.08001 * 119.99821 * 0.02562 * 10 9 7 12 12 C 1.38950 * 120.00040 * 180.02562 * 10 9 7 13 13 N 1.31417 * 119.99666 * 0.02562 * 12 10 9 14 14 Si 1.86789 * 120.00034 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47356 * 0.02562 * 14 12 10 16 16 H 1.48510 * 109.47160 * 120.00145 * 14 12 10 17 17 H 1.48503 * 109.47193 * 239.99941 * 14 12 10 18 18 N 1.46497 * 109.47359 * 119.99951 * 2 1 3 19 19 C 1.46494 * 120.00181 * 60.00359 * 18 2 1 20 20 C 1.34783 * 119.99943 * 240.00322 * 18 2 1 21 21 O 1.21711 * 119.99761 * 3.91797 * 20 18 2 22 22 C 1.46518 * 119.99790 * 183.91829 * 20 18 2 23 23 C 1.36611 * 125.97608 * 184.57896 * 22 20 18 24 24 C 1.40252 * 106.73800 * 179.97438 * 23 22 20 25 25 C 1.35369 * 107.11761 * 0.02562 * 24 23 22 26 26 Cl 1.73595 * 125.63180 * 179.97438 * 25 24 23 27 27 O 1.33952 * 108.73482 * 359.76736 * 25 24 23 28 28 H 1.08999 * 109.46572 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47054 * 299.99665 * 1 2 3 30 30 H 1.08998 * 109.47183 * 60.00036 * 1 2 3 31 31 H 1.09004 * 109.47105 * 304.99143 * 4 2 1 32 32 H 1.08998 * 109.47645 * 64.99281 * 4 2 1 33 33 H 1.00896 * 110.99767 * 56.03972 * 5 4 2 34 34 H 1.08999 * 109.46541 * 299.99427 * 6 5 4 35 35 H 1.08991 * 109.47377 * 59.99752 * 6 5 4 36 36 H 0.96998 * 120.00300 * 0.02562 * 9 7 6 37 37 H 0.97003 * 119.99387 * 179.97438 * 13 12 10 38 38 H 1.08999 * 109.47117 * 264.16209 * 19 18 2 39 39 H 1.08996 * 109.47731 * 144.16352 * 19 18 2 40 40 H 1.09000 * 109.46872 * 24.15791 * 19 18 2 41 41 H 1.08007 * 126.63319 * 359.95961 * 23 22 20 42 42 H 1.07997 * 126.44217 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 3.5041 -0.8265 -1.1904 6 6 4.0304 -1.5157 -2.3763 7 6 5.5318 -1.6041 -2.2808 8 8 6.1068 -1.1384 -1.3197 9 7 6.2355 -2.2006 -3.2633 10 6 7.6015 -2.2806 -3.1767 11 1 8.1135 -1.8659 -2.3210 12 6 8.3270 -2.8951 -4.1899 13 7 7.7040 -3.3992 -5.2314 14 14 10.1880 -3.0047 -4.0716 15 1 10.6422 -2.3668 -2.8100 16 1 10.6015 -4.4311 -4.0813 17 1 10.7997 -2.3042 -5.2293 18 7 2.0184 -0.6906 1.1961 19 6 1.6646 -2.0931 1.4280 20 6 2.7933 -0.0355 2.0833 21 8 3.0285 1.1485 1.9281 22 6 3.3523 -0.7488 3.2346 23 6 4.0757 -0.1909 4.2503 24 6 4.4061 -1.2319 5.1301 25 6 3.8767 -2.3683 4.6194 26 17 3.9995 -3.9485 5.3276 27 8 3.2387 -2.0713 3.4796 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6055 -1.7198 -1.2952 32 1 1.7516 -0.1582 -2.1370 33 1 3.7996 -1.2882 -0.3433 34 1 3.6096 -2.5197 -2.4295 35 1 3.7559 -0.9587 -3.2719 36 1 5.7757 -2.5727 -4.0320 37 1 8.2106 -3.8279 -5.9389 38 1 0.7970 -2.1450 2.0856 39 1 2.5049 -2.6076 1.8940 40 1 1.4286 -2.5703 0.4768 41 1 4.3420 0.8506 4.3554 42 1 4.9764 -1.1437 6.0430 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753678732.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:17 Heat of formation + Delta-G solvation = -39.480031 kcal Electronic energy + Delta-G solvation = -27703.793628 eV Core-core repulsion = 23519.591878 eV Total energy + Delta-G solvation = -4184.201750 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 343.113 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.06765 -40.03568 -38.26445 -37.37464 -37.01786 -34.73063 -33.81056 -33.47061 -32.06945 -31.17736 -29.67017 -27.60197 -27.19298 -25.06685 -24.02880 -23.10380 -22.29430 -21.10835 -19.87340 -19.17627 -18.17257 -17.87216 -17.29701 -16.95335 -16.50900 -16.22009 -15.56318 -15.10147 -14.56083 -14.41147 -14.24276 -13.97990 -13.83586 -13.60868 -13.56045 -13.52652 -13.27660 -13.05727 -12.62624 -12.50701 -12.45984 -12.22064 -11.90246 -11.70278 -11.63323 -11.59202 -11.41713 -11.09606 -10.97318 -10.39611 -10.32804 -10.32700 -10.20659 -9.50117 -9.03156 -8.77016 -8.41134 -8.03888 -7.93742 -6.40193 -3.80658 0.68195 0.76364 1.93323 2.53797 2.98075 3.13309 3.17662 3.28071 3.35915 3.92746 4.05953 4.25336 4.39012 4.47493 4.83148 4.88490 4.93562 5.05228 5.09173 5.16243 5.19171 5.26525 5.30793 5.39795 5.44846 5.48116 5.61541 5.69696 5.77778 5.83115 5.90949 5.97099 5.99083 6.25162 6.28502 6.42879 7.08036 7.20712 7.57290 7.64183 7.87140 8.08617 8.63464 9.20088 9.56231 10.08134 10.77742 Molecular weight = 343.11amu Principal moments of inertia in cm(-1) A = 0.009277 B = 0.003025 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3017.459941 B = 9255.411693 C =11186.750204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.138 3.862 3 H 0.114 0.886 4 C 0.048 3.952 5 N -0.665 5.665 6 C 0.051 3.949 7 C 0.440 3.560 8 O -0.580 6.580 9 N -0.564 5.564 10 C -0.298 4.298 11 H 0.103 0.897 12 C 0.022 3.978 13 N -0.903 5.903 14 Si 0.929 3.071 15 H -0.268 1.268 16 H -0.282 1.282 17 H -0.281 1.281 18 N -0.601 5.601 19 C 0.066 3.934 20 C 0.608 3.392 21 O -0.504 6.504 22 C -0.052 4.052 23 C -0.112 4.112 24 C -0.182 4.182 25 C 0.041 3.959 26 Cl 0.031 6.969 27 O -0.149 6.149 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.030 0.970 32 H 0.086 0.914 33 H 0.347 0.653 34 H 0.042 0.958 35 H 0.087 0.913 36 H 0.392 0.608 37 H 0.270 0.730 38 H 0.060 0.940 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.170 0.830 42 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.654 0.123 16.721 23.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.035 3.965 3 H 0.132 0.868 4 C -0.082 4.082 5 N -0.298 5.298 6 C -0.082 4.082 7 C 0.226 3.774 8 O -0.464 6.464 9 N -0.201 5.201 10 C -0.427 4.427 11 H 0.121 0.879 12 C -0.180 4.180 13 N -0.544 5.544 14 Si 0.756 3.244 15 H -0.192 1.192 16 H -0.208 1.208 17 H -0.207 1.207 18 N -0.334 5.334 19 C -0.076 4.076 20 C 0.395 3.605 21 O -0.380 6.380 22 C -0.104 4.104 23 C -0.132 4.132 24 C -0.202 4.202 25 C -0.037 4.037 26 Cl 0.060 6.940 27 O -0.047 6.047 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.048 0.952 32 H 0.104 0.896 33 H 0.167 0.833 34 H 0.060 0.940 35 H 0.105 0.895 36 H 0.225 0.775 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.104 0.896 40 H 0.097 0.903 41 H 0.188 0.812 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -16.107 1.253 16.708 23.241 hybrid contribution 0.500 -1.702 -0.235 1.790 sum -15.606 -0.450 16.473 22.696 Atomic orbital electron populations 1.22099 0.94280 1.02432 1.02861 1.21289 0.93682 0.98949 0.82552 0.86810 1.22366 0.89166 0.98894 0.97797 1.60009 1.07383 1.57410 1.04953 1.21683 0.95176 0.96827 0.94504 1.19813 0.88088 0.84219 0.85310 1.90542 1.71092 1.51266 1.33492 1.41862 1.07406 1.50951 1.19920 1.19760 0.81518 1.34868 1.06569 0.87903 1.25254 1.00674 0.96829 0.95218 1.69626 1.36568 1.38789 1.09439 0.85805 0.82270 0.77849 0.78459 1.19210 1.20790 1.20720 1.47727 1.50234 1.12727 1.22708 1.22087 1.01808 0.81259 1.02436 1.16490 0.78296 0.85762 0.79965 1.90906 1.59699 1.13803 1.73588 1.22180 1.08001 0.79908 1.00301 1.21935 0.97497 1.01410 0.92392 1.21535 1.05600 0.89732 1.03361 1.22992 1.01891 0.89865 0.88953 1.98451 1.96363 1.20899 1.78327 1.84263 1.59493 1.25796 1.35160 0.92281 0.91964 0.90878 0.95210 0.89555 0.83272 0.94046 0.89479 0.77503 0.91969 0.92177 0.89564 0.90323 0.81206 0.81569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.27 9.20 37.16 0.34 -0.93 16 2 C 0.14 1.57 2.94 -67.93 -0.20 1.37 16 3 H 0.11 1.56 6.90 -51.92 -0.36 1.20 16 4 C 0.05 0.58 5.00 -3.82 -0.02 0.56 16 5 N -0.66 -11.32 6.12 -115.06 -0.70 -12.02 16 6 C 0.05 0.92 6.17 -4.98 -0.03 0.89 16 7 C 0.44 10.73 7.82 -10.99 -0.09 10.65 16 8 O -0.58 -16.43 15.78 5.54 0.09 -16.34 16 9 N -0.56 -14.59 5.29 -10.96 -0.06 -14.65 16 10 C -0.30 -8.46 9.68 -14.93 -0.14 -8.61 16 11 H 0.10 3.09 7.16 -52.49 -0.38 2.71 16 12 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 13 N -0.90 -24.80 13.05 55.50 0.72 -24.08 16 14 Si 0.93 21.37 29.55 -169.99 -5.02 16.35 16 15 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 16 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 18 N -0.60 -7.21 1.83 -175.54 -0.32 -7.53 16 19 C 0.07 0.63 8.83 59.84 0.53 1.16 16 20 C 0.61 8.79 7.64 -12.92 -0.10 8.69 16 21 O -0.50 -8.74 16.20 5.18 0.08 -8.66 16 22 C -0.05 -0.67 6.81 -36.83 -0.25 -0.93 16 23 C -0.11 -1.29 10.62 -39.41 -0.42 -1.71 16 24 C -0.18 -1.79 10.84 -39.85 -0.43 -2.23 16 25 C 0.04 0.44 7.93 29.71 0.24 0.67 16 26 Cl 0.03 0.27 29.30 -51.86 -1.52 -1.25 16 27 O -0.15 -1.77 7.17 4.73 0.03 -1.73 16 28 H 0.06 0.41 7.67 -51.93 -0.40 0.01 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.03 0.32 6.87 -51.93 -0.36 -0.04 16 32 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.35 6.38 7.56 -39.29 -0.30 6.08 16 34 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 36 H 0.39 9.63 7.90 -40.82 -0.32 9.31 16 37 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.09 0.91 5.06 -51.93 -0.26 0.65 16 40 H 0.08 0.66 6.54 -51.93 -0.34 0.32 16 41 H 0.17 1.75 8.06 -52.48 -0.42 1.33 16 42 H 0.17 1.17 8.06 -52.49 -0.42 0.74 16 LS Contribution 373.51 15.07 5.63 5.63 Total: -1.00 -33.95 373.51 -6.97 -40.92 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: -5.23 Total: 13.30 kcal Atomic # 6 Polarization: 10.75 SS G_CDS: -0.67 Total: 10.08 kcal Atomic # 7 Polarization: -57.93 SS G_CDS: -0.36 Total: -58.29 kcal Atomic # 8 Polarization: -26.94 SS G_CDS: 0.21 Total: -26.74 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 17 Polarization: 0.27 SS G_CDS: -1.52 Total: -1.25 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.95 -6.97 -40.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753678732.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.437 kcal (2) G-P(sol) polarization free energy of solvation -33.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds