Wall clock time and date at job start Wed Apr 1 2020 02:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09008 * 109.46563 * 2 1 4 4 C 1.52995 * 109.47234 * 240.00509 * 2 1 3 5 5 N 1.46906 * 109.47244 * 184.99960 * 4 2 1 6 6 C 1.46903 * 111.00105 * 179.97438 * 5 4 2 7 7 C 1.50698 * 109.46776 * 179.97438 * 6 5 4 8 8 O 1.21295 * 120.00151 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99774 * 179.97438 * 7 6 5 10 10 C 1.37103 * 120.00034 * 179.97438 * 9 7 6 11 11 H 1.08001 * 119.99821 * 0.02562 * 10 9 7 12 12 C 1.38950 * 120.00040 * 180.02562 * 10 9 7 13 13 N 1.31417 * 119.99666 * 0.02562 * 12 10 9 14 14 Si 1.86789 * 120.00034 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47356 * 0.02562 * 14 12 10 16 16 H 1.48510 * 109.47160 * 120.00145 * 14 12 10 17 17 H 1.48503 * 109.47193 * 239.99941 * 14 12 10 18 18 N 1.46497 * 109.47359 * 119.99951 * 2 1 3 19 19 C 1.46494 * 120.00181 * 60.00359 * 18 2 1 20 20 C 1.34783 * 119.99943 * 240.00322 * 18 2 1 21 21 O 1.21711 * 119.99761 * 3.91797 * 20 18 2 22 22 C 1.46518 * 119.99790 * 183.91829 * 20 18 2 23 23 C 1.36611 * 125.97608 * 184.57896 * 22 20 18 24 24 C 1.40252 * 106.73800 * 179.97438 * 23 22 20 25 25 C 1.35369 * 107.11761 * 0.02562 * 24 23 22 26 26 Cl 1.73595 * 125.63180 * 179.97438 * 25 24 23 27 27 O 1.33952 * 108.73482 * 359.76736 * 25 24 23 28 28 H 1.08999 * 109.46572 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47054 * 299.99665 * 1 2 3 30 30 H 1.08998 * 109.47183 * 60.00036 * 1 2 3 31 31 H 1.09004 * 109.47105 * 304.99143 * 4 2 1 32 32 H 1.08998 * 109.47645 * 64.99281 * 4 2 1 33 33 H 1.00896 * 110.99767 * 56.03972 * 5 4 2 34 34 H 1.08999 * 109.46541 * 299.99427 * 6 5 4 35 35 H 1.08991 * 109.47377 * 59.99752 * 6 5 4 36 36 H 0.96998 * 120.00300 * 0.02562 * 9 7 6 37 37 H 0.97003 * 119.99387 * 179.97438 * 13 12 10 38 38 H 1.08999 * 109.47117 * 264.16209 * 19 18 2 39 39 H 1.08996 * 109.47731 * 144.16352 * 19 18 2 40 40 H 1.09000 * 109.46872 * 24.15791 * 19 18 2 41 41 H 1.08007 * 126.63319 * 359.95961 * 23 22 20 42 42 H 1.07997 * 126.44217 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 3.5041 -0.8265 -1.1904 6 6 4.0304 -1.5157 -2.3763 7 6 5.5318 -1.6041 -2.2808 8 8 6.1068 -1.1384 -1.3197 9 7 6.2355 -2.2006 -3.2633 10 6 7.6015 -2.2806 -3.1767 11 1 8.1135 -1.8659 -2.3210 12 6 8.3270 -2.8951 -4.1899 13 7 7.7040 -3.3992 -5.2314 14 14 10.1880 -3.0047 -4.0716 15 1 10.6422 -2.3668 -2.8100 16 1 10.6015 -4.4311 -4.0813 17 1 10.7997 -2.3042 -5.2293 18 7 2.0184 -0.6906 1.1961 19 6 1.6646 -2.0931 1.4280 20 6 2.7933 -0.0355 2.0833 21 8 3.0285 1.1485 1.9281 22 6 3.3523 -0.7488 3.2346 23 6 4.0757 -0.1909 4.2503 24 6 4.4061 -1.2319 5.1301 25 6 3.8767 -2.3683 4.6194 26 17 3.9995 -3.9485 5.3276 27 8 3.2387 -2.0713 3.4796 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6055 -1.7198 -1.2952 32 1 1.7516 -0.1582 -2.1370 33 1 3.7996 -1.2882 -0.3433 34 1 3.6096 -2.5197 -2.4295 35 1 3.7559 -0.9587 -3.2719 36 1 5.7757 -2.5727 -4.0320 37 1 8.2106 -3.8279 -5.9389 38 1 0.7970 -2.1450 2.0856 39 1 2.5049 -2.6076 1.8940 40 1 1.4286 -2.5703 0.4768 41 1 4.3420 0.8506 4.3554 42 1 4.9764 -1.1437 6.0430 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753678732.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:16 Heat of formation + Delta-G solvation = -63.919714 kcal Electronic energy + Delta-G solvation = -27704.853412 eV Core-core repulsion = 23519.591878 eV Total energy + Delta-G solvation = -4185.261534 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 343.113 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.94243 -41.05589 -40.13331 -38.18371 -38.11968 -36.20838 -35.59927 -34.37573 -33.32626 -32.97608 -30.54946 -28.99695 -28.03101 -26.71852 -25.12225 -24.38996 -23.14038 -22.03299 -21.17745 -20.67839 -19.92109 -19.07989 -18.24808 -17.97634 -17.82437 -17.32822 -17.07527 -16.42914 -16.26263 -15.92782 -15.49569 -15.27912 -15.05765 -14.73624 -14.47496 -14.46197 -14.28243 -14.15172 -14.02321 -13.55621 -13.29582 -13.22670 -13.12610 -13.05494 -12.97055 -12.80182 -12.52785 -12.44311 -12.41054 -12.13106 -11.91079 -11.53657 -11.40998 -11.25129 -10.40761 -10.03347 -9.96131 -9.62684 -9.31110 -8.48764 -5.97438 -0.25345 -0.05686 1.07818 1.34912 1.40312 1.54626 1.62025 1.98775 2.02716 2.22789 2.27943 2.88197 3.18342 3.40856 3.51015 3.65501 3.89884 4.09205 4.13657 4.19753 4.22891 4.31809 4.34706 4.45844 4.55037 4.57639 4.67383 4.68353 4.73868 4.79997 4.91456 5.04752 5.09215 5.26228 5.39070 5.39907 5.54433 5.86288 6.08359 6.11945 6.30653 6.58470 6.85008 7.11007 7.53793 8.10096 8.68841 Molecular weight = 343.11amu Principal moments of inertia in cm(-1) A = 0.009277 B = 0.003025 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3017.459941 B = 9255.411693 C =11186.750204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.136 3.864 3 H 0.084 0.916 4 C 0.050 3.950 5 N -0.687 5.687 6 C 0.066 3.934 7 C 0.434 3.566 8 O -0.626 6.626 9 N -0.571 5.571 10 C -0.335 4.335 11 H 0.075 0.925 12 C -0.011 4.011 13 N -0.919 5.919 14 Si 0.992 3.008 15 H -0.276 1.276 16 H -0.268 1.268 17 H -0.269 1.269 18 N -0.596 5.596 19 C 0.065 3.935 20 C 0.598 3.402 21 O -0.549 6.549 22 C -0.077 4.077 23 C -0.115 4.115 24 C -0.177 4.177 25 C 0.033 3.967 26 Cl 0.048 6.952 27 O -0.151 6.151 28 H 0.077 0.923 29 H 0.058 0.942 30 H 0.089 0.911 31 H 0.056 0.944 32 H 0.101 0.899 33 H 0.336 0.664 34 H 0.070 0.930 35 H 0.108 0.892 36 H 0.397 0.603 37 H 0.278 0.722 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.095 0.905 41 H 0.176 0.824 42 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.762 -1.250 16.498 24.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.034 3.966 3 H 0.102 0.898 4 C -0.079 4.079 5 N -0.320 5.320 6 C -0.066 4.066 7 C 0.222 3.778 8 O -0.513 6.513 9 N -0.208 5.208 10 C -0.464 4.464 11 H 0.093 0.907 12 C -0.210 4.210 13 N -0.559 5.559 14 Si 0.815 3.185 15 H -0.201 1.201 16 H -0.193 1.193 17 H -0.195 1.195 18 N -0.328 5.328 19 C -0.077 4.077 20 C 0.387 3.613 21 O -0.429 6.429 22 C -0.129 4.129 23 C -0.136 4.136 24 C -0.196 4.196 25 C -0.044 4.044 26 Cl 0.077 6.923 27 O -0.050 6.050 28 H 0.096 0.904 29 H 0.077 0.923 30 H 0.107 0.893 31 H 0.074 0.926 32 H 0.120 0.880 33 H 0.155 0.845 34 H 0.088 0.912 35 H 0.126 0.874 36 H 0.231 0.769 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.114 0.886 41 H 0.193 0.807 42 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -17.274 -0.161 16.446 23.851 hybrid contribution 0.822 -1.324 -0.125 1.563 sum -16.452 -1.485 16.320 23.221 Atomic orbital electron populations 1.22026 0.91180 1.03806 1.03524 1.21339 0.95896 0.97265 0.82111 0.89816 1.22499 0.86108 1.00613 0.98658 1.60000 1.10641 1.57404 1.03919 1.21550 0.90204 0.99007 0.95836 1.20960 0.90790 0.82229 0.83848 1.90511 1.72885 1.52775 1.35126 1.41910 1.06834 1.51493 1.20583 1.19677 0.83097 1.36915 1.06756 0.90693 1.26014 1.04867 0.95722 0.94447 1.69674 1.38204 1.38412 1.09648 0.84892 0.76909 0.78410 0.78248 1.20072 1.19325 1.19462 1.47856 1.49165 1.13580 1.22163 1.22238 1.02068 0.79658 1.03707 1.16770 0.78391 0.85536 0.80620 1.90864 1.61558 1.15560 1.74909 1.22065 1.09533 0.80593 1.00737 1.22218 0.96830 1.02214 0.92352 1.21867 1.05168 0.88725 1.03863 1.23351 1.01533 0.90924 0.88633 1.98457 1.96243 1.19716 1.77877 1.84253 1.59827 1.25155 1.35719 0.90449 0.92312 0.89264 0.92552 0.88040 0.84523 0.91211 0.87383 0.76869 0.91225 0.90124 0.90735 0.88643 0.80684 0.78698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.20 71.98 0.66 -1.35 16 2 C 0.14 2.98 2.94 44.99 0.13 3.11 16 3 H 0.08 2.37 6.90 -2.38 -0.02 2.35 16 4 C 0.05 1.11 5.00 86.30 0.43 1.54 16 5 N -0.69 -22.94 6.12 -517.93 -3.17 -26.11 16 6 C 0.07 2.31 6.17 85.56 0.53 2.83 16 7 C 0.43 21.43 7.82 87.66 0.69 22.12 16 8 O -0.63 -36.71 15.78 -3.08 -0.05 -36.76 16 9 N -0.57 -29.90 5.29 -306.98 -1.62 -31.53 16 10 C -0.33 -19.48 9.68 84.04 0.81 -18.66 16 11 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 12 C -0.01 -0.57 5.50 84.93 0.47 -0.11 16 13 N -0.92 -49.78 13.05 21.66 0.28 -49.50 16 14 Si 0.99 43.59 29.55 68.60 2.03 45.62 16 15 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 16 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 17 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 18 N -0.60 -14.15 1.83 -827.49 -1.52 -15.67 16 19 C 0.06 1.13 8.83 127.77 1.13 2.26 16 20 C 0.60 18.03 7.64 86.40 0.66 18.69 16 21 O -0.55 -20.28 16.20 -4.38 -0.07 -20.35 16 22 C -0.08 -2.07 6.81 24.05 0.16 -1.91 16 23 C -0.12 -2.71 10.62 22.38 0.24 -2.48 16 24 C -0.18 -3.33 10.84 22.10 0.24 -3.09 16 25 C 0.03 0.69 7.93 67.16 0.53 1.22 16 26 Cl 0.05 0.79 29.30 -2.72 -0.08 0.71 16 27 O -0.15 -3.58 7.17 -5.99 -0.04 -3.62 16 28 H 0.08 0.80 7.67 -2.39 -0.02 0.78 16 29 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.06 0.98 6.87 -2.38 -0.02 0.96 16 32 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.34 12.43 7.56 -89.70 -0.68 11.75 16 34 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.11 3.33 8.14 -2.39 -0.02 3.31 16 36 H 0.40 19.53 7.90 -92.71 -0.73 18.79 16 37 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 38 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.07 1.54 5.06 -2.39 -0.01 1.52 16 40 H 0.10 1.33 6.54 -2.39 -0.02 1.32 16 41 H 0.18 3.78 8.06 -2.91 -0.02 3.75 16 42 H 0.20 2.36 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -76.23 373.51 2.12 -74.11 By element: Atomic # 1 Polarization: 39.23 SS G_CDS: -0.32 Total: 38.91 kcal Atomic # 6 Polarization: 17.50 SS G_CDS: 6.68 Total: 24.18 kcal Atomic # 7 Polarization: -116.77 SS G_CDS: -6.03 Total: -122.80 kcal Atomic # 8 Polarization: -60.57 SS G_CDS: -0.16 Total: -60.74 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 17 Polarization: 0.79 SS G_CDS: -0.08 Total: 0.71 kcal Total: -76.23 2.12 -74.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753678732.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.195 kcal (2) G-P(sol) polarization free energy of solvation -76.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds