Wall clock time and date at job start Wed Apr 1 2020 02:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35723 * 116.99796 * 2 1 4 4 C 1.39181 * 119.85840 * 0.02562 * 3 2 1 5 5 C 1.37547 * 120.23620 * 179.74352 * 4 3 2 6 6 C 1.39864 * 119.96436 * 0.50648 * 5 4 3 7 7 C 1.47267 * 120.13898 * 179.74362 * 6 5 4 8 8 O 1.21633 * 120.00334 * 179.72707 * 7 6 5 9 9 N 1.34785 * 119.99871 * 359.72456 * 7 6 5 10 10 C 1.39856 * 119.99811 * 175.48551 * 9 7 6 11 11 C 1.38975 * 120.03480 * 215.15726 * 10 9 7 12 12 C 1.38159 * 120.06475 * 179.97438 * 11 10 9 13 13 C 1.38179 * 120.13542 * 359.74924 * 12 11 10 14 14 C 1.38904 * 120.07553 * 0.50575 * 13 12 11 15 15 O 1.35754 * 120.03159 * 179.76835 * 14 13 12 16 16 C 1.34832 * 117.00077 * 354.33784 * 15 14 13 17 17 H 1.08005 * 119.99737 * 5.02980 * 16 15 14 18 18 C 1.38651 * 119.99965 * 185.02560 * 16 15 14 19 19 N 1.31559 * 119.99646 * 180.02562 * 18 16 15 20 20 Si 1.86792 * 120.00099 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47020 * 90.00103 * 20 18 16 22 22 H 1.48501 * 109.47191 * 209.99731 * 20 18 16 23 23 H 1.48500 * 109.47156 * 330.00175 * 20 18 16 24 24 C 1.38735 * 120.03650 * 35.14459 * 10 9 7 25 25 C 1.40316 * 119.72777 * 359.47178 * 6 5 4 26 26 O 1.35657 * 120.12184 * 180.29706 * 25 6 5 27 27 C 1.42897 * 116.99772 * 179.97438 * 26 25 6 28 28 C 1.38441 * 119.75451 * 0.27243 * 25 6 5 29 29 H 1.08995 * 109.47536 * 299.99993 * 1 2 3 30 30 H 1.09001 * 109.46838 * 60.00268 * 1 2 3 31 31 H 1.09005 * 109.46817 * 179.97438 * 1 2 3 32 32 H 1.07997 * 119.88264 * 0.02562 * 4 3 2 33 33 H 1.08002 * 120.01843 * 180.27603 * 5 4 3 34 34 H 0.96999 * 119.99687 * 355.48837 * 9 7 6 35 35 H 1.08003 * 119.97128 * 359.96520 * 11 10 9 36 36 H 1.08001 * 119.92892 * 180.02562 * 12 11 10 37 37 H 1.08005 * 119.95664 * 180.25372 * 13 12 11 38 38 H 0.97000 * 119.99951 * 180.02562 * 19 18 16 39 39 H 1.08001 * 120.07064 * 359.97438 * 24 10 9 40 40 H 1.08999 * 109.46811 * 179.97438 * 27 26 25 41 41 H 1.08993 * 109.47399 * 299.99946 * 27 26 25 42 42 H 1.09005 * 109.47256 * 60.00104 * 27 26 25 43 43 H 1.07996 * 119.97994 * 179.97438 * 28 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 1.2842 2.3747 0.0005 5 6 1.9005 3.6044 0.0059 6 6 3.2967 3.6860 0.0000 7 6 3.9606 5.0006 0.0000 8 8 5.1750 5.0687 0.0000 9 7 3.2224 6.1283 0.0000 10 6 3.8497 7.3746 0.0953 11 6 3.2393 8.4089 0.7946 12 6 3.8587 9.6402 0.8896 13 6 5.0887 9.8458 0.2944 14 6 5.7015 8.8177 -0.4104 15 8 6.9077 9.0221 -0.9988 16 6 7.4021 10.2760 -0.9620 17 1 6.8824 11.0453 -0.4102 18 6 8.5776 10.5776 -1.6326 19 7 9.0602 11.8009 -1.5963 20 14 9.4759 9.2471 -2.5875 21 1 8.9772 9.2192 -3.9860 22 1 10.9327 9.5355 -2.5872 23 1 9.2320 7.9289 -1.9486 24 6 5.0821 7.5797 -0.5079 25 6 4.0625 2.5102 0.0000 26 8 5.4172 2.5801 0.0005 27 6 6.1306 1.3419 0.0010 28 6 3.4303 1.2786 0.0000 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2060 2.3133 0.0014 33 1 1.3066 4.5064 0.0108 34 1 2.2561 6.0754 -0.0661 35 1 2.2798 8.2501 1.2642 36 1 3.3826 10.4424 1.4340 37 1 5.5722 10.8083 0.3740 38 1 9.8823 12.0121 -2.0657 39 1 5.5588 6.7774 -1.0515 40 1 7.2025 1.5402 0.0009 41 1 5.8666 0.7708 0.8909 42 1 5.8672 0.7703 -0.8890 43 1 4.0161 0.3713 -0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042786616.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:52 Heat of formation + Delta-G solvation = -89.452151 kcal Electronic energy + Delta-G solvation = -28738.962743 eV Core-core repulsion = 24522.734138 eV Total energy + Delta-G solvation = -4216.228605 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.130 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.02730 -41.19491 -40.35638 -39.92311 -38.23588 -37.44127 -35.51944 -34.43943 -32.32673 -31.37316 -31.09262 -30.01095 -28.20155 -28.17156 -27.22038 -25.03244 -23.81197 -23.23298 -22.64314 -21.57585 -20.08822 -19.79342 -19.37784 -18.52261 -17.92014 -17.39155 -17.06986 -16.88430 -16.81902 -16.53215 -16.45551 -16.19411 -15.90897 -15.76843 -15.66013 -15.38424 -14.84032 -14.38767 -14.28292 -14.20314 -14.11626 -13.77632 -13.57364 -13.26750 -13.18688 -12.95165 -12.74049 -12.58186 -12.48550 -12.45559 -12.05459 -11.98797 -11.67847 -11.49793 -11.26732 -10.87626 -10.74164 -9.75468 -9.42397 -9.23439 -8.88397 -8.51517 -6.22849 -0.23534 0.27578 0.48388 0.66199 1.26366 1.30232 1.49234 1.80764 1.99480 2.08632 2.26705 2.36661 2.68552 2.79450 3.02453 3.19271 3.61551 3.73368 3.95324 4.04212 4.11894 4.13362 4.30968 4.34904 4.36938 4.40580 4.40803 4.45437 4.47880 4.65906 4.67317 4.72124 4.80375 4.84088 4.97818 5.08529 5.16700 5.36296 5.40047 5.41926 5.45682 5.68673 5.79142 5.91607 6.20155 6.23466 6.33110 6.52681 6.83660 7.22414 7.60920 8.59945 Molecular weight = 343.13amu Principal moments of inertia in cm(-1) A = 0.015873 B = 0.002591 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.554199 B =10805.396474 C =12253.880322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.325 6.325 3 C 0.196 3.804 4 C -0.244 4.244 5 C 0.006 3.994 6 C -0.234 4.234 7 C 0.552 3.448 8 O -0.550 6.550 9 N -0.652 5.652 10 C 0.185 3.815 11 C -0.193 4.193 12 C -0.051 4.051 13 C -0.249 4.249 14 C 0.133 3.867 15 O -0.251 6.251 16 C -0.397 4.397 17 H 0.089 0.911 18 C 0.014 3.986 19 N -0.918 5.918 20 Si 0.962 3.038 21 H -0.264 1.264 22 H -0.261 1.261 23 H -0.277 1.277 24 C -0.205 4.205 25 C 0.206 3.794 26 O -0.313 6.313 27 C 0.012 3.988 28 C -0.266 4.266 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.120 0.880 32 H 0.174 0.826 33 H 0.172 0.828 34 H 0.428 0.572 35 H 0.169 0.831 36 H 0.158 0.842 37 H 0.114 0.886 38 H 0.285 0.715 39 H 0.109 0.891 40 H 0.106 0.894 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.972 -25.603 4.645 35.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.238 6.238 3 C 0.148 3.852 4 C -0.262 4.262 5 C -0.012 4.012 6 C -0.239 4.239 7 C 0.343 3.657 8 O -0.427 6.427 9 N -0.301 5.301 10 C 0.090 3.910 11 C -0.213 4.213 12 C -0.070 4.070 13 C -0.268 4.268 14 C 0.084 3.916 15 O -0.158 6.158 16 C -0.473 4.473 17 H 0.106 0.894 18 C -0.185 4.185 19 N -0.559 5.559 20 Si 0.785 3.215 21 H -0.189 1.189 22 H -0.185 1.185 23 H -0.202 1.202 24 C -0.226 4.226 25 C 0.157 3.843 26 O -0.224 6.224 27 C -0.082 4.082 28 C -0.285 4.285 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.138 0.862 32 H 0.191 0.809 33 H 0.189 0.811 34 H 0.269 0.731 35 H 0.186 0.814 36 H 0.176 0.824 37 H 0.132 0.868 38 H 0.095 0.905 39 H 0.127 0.873 40 H 0.124 0.876 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -22.605 -25.679 4.473 34.503 hybrid contribution 0.664 -0.073 -0.486 0.826 sum -21.941 -25.752 3.988 34.066 Atomic orbital electron populations 1.23521 0.75376 1.06094 1.03172 1.86045 1.24370 1.26325 1.87034 1.19051 0.91271 0.85358 0.89484 1.21421 1.02117 0.90540 1.12163 1.21259 0.90368 0.99739 0.89870 1.19142 0.94568 0.89605 1.20550 1.18585 0.86697 0.84745 0.75640 1.90884 1.15577 1.87322 1.48959 1.43113 1.11205 1.02617 1.73120 1.17300 0.92194 0.85902 0.95617 1.20948 1.03656 0.92352 1.04383 1.21034 0.92349 0.97632 0.95966 1.21356 0.99703 0.99631 1.06152 1.19378 0.85109 0.94404 0.92729 1.83543 1.30626 1.31279 1.70372 1.20777 1.08819 0.84218 1.33485 0.89355 1.25156 0.96782 0.98767 0.97748 1.69709 1.22822 1.19466 1.43921 0.85351 0.78108 0.78916 0.79136 1.18906 1.18521 1.20177 1.20234 0.98680 0.95362 1.08332 1.18959 0.83060 0.92664 0.89583 1.86400 1.15288 1.34404 1.86349 1.23435 0.97485 0.84398 1.02847 1.20425 0.93710 0.96940 1.17423 0.90722 0.90830 0.86221 0.80866 0.81116 0.73138 0.81405 0.82437 0.86770 0.90535 0.87292 0.87557 0.90709 0.90880 0.82882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 9.80 113.37 1.11 1.16 16 2 O -0.33 -4.19 10.48 -90.46 -0.95 -5.13 16 3 C 0.20 3.04 6.69 22.60 0.15 3.19 16 4 C -0.24 -2.79 9.01 22.33 0.20 -2.59 16 5 C 0.01 0.09 9.52 22.50 0.21 0.30 16 6 C -0.23 -5.83 5.89 -20.00 -0.12 -5.95 16 7 C 0.55 18.21 7.60 86.62 0.66 18.87 16 8 O -0.55 -24.53 12.59 16.83 0.21 -24.32 16 9 N -0.65 -17.74 5.28 -306.61 -1.62 -19.36 16 10 C 0.18 6.55 6.29 38.16 0.24 6.79 16 11 C -0.19 -5.65 9.96 22.43 0.22 -5.43 16 12 C -0.05 -1.73 10.03 22.24 0.22 -1.51 16 13 C -0.25 -11.37 9.16 22.42 0.21 -11.17 16 14 C 0.13 6.98 6.64 22.56 0.15 7.13 16 15 O -0.25 -15.13 8.58 -22.80 -0.20 -15.32 16 16 C -0.40 -24.78 9.95 67.92 0.68 -24.10 16 17 H 0.09 5.63 5.43 -2.91 -0.02 5.61 16 18 C 0.01 0.86 5.49 84.83 0.47 1.33 16 19 N -0.92 -56.68 13.96 21.61 0.30 -56.38 16 20 Si 0.96 49.28 28.62 68.60 1.96 51.24 16 21 H -0.26 -12.95 7.11 99.48 0.71 -12.24 16 22 H -0.26 -12.26 7.11 99.48 0.71 -11.55 16 23 H -0.28 -14.90 7.11 99.48 0.71 -14.19 16 24 C -0.20 -9.63 8.64 22.52 0.19 -9.43 16 25 C 0.21 5.34 6.70 22.82 0.15 5.49 16 26 O -0.31 -9.49 8.56 -68.75 -0.59 -10.08 16 27 C 0.01 0.24 9.81 113.37 1.11 1.35 16 28 C -0.27 -5.17 8.96 22.43 0.20 -4.96 16 29 H 0.07 0.10 7.65 -2.39 -0.02 0.08 16 30 H 0.07 0.12 7.65 -2.39 -0.02 0.10 16 31 H 0.12 0.05 8.14 -2.38 -0.02 0.03 16 32 H 0.17 0.67 6.27 -2.91 -0.02 0.65 16 33 H 0.17 1.11 6.40 -2.91 -0.02 1.09 16 34 H 0.43 6.85 6.85 -92.71 -0.64 6.22 16 35 H 0.17 3.13 8.06 -2.91 -0.02 3.10 16 36 H 0.16 3.98 8.06 -2.91 -0.02 3.96 16 37 H 0.11 5.61 5.63 -2.91 -0.02 5.59 16 38 H 0.28 16.12 8.31 -92.71 -0.77 15.35 16 39 H 0.11 5.66 6.22 -2.91 -0.02 5.64 16 40 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.07 1.11 7.66 -2.39 -0.02 1.09 16 42 H 0.07 1.11 7.66 -2.38 -0.02 1.09 16 43 H 0.15 2.48 6.29 -2.91 -0.02 2.46 16 Total: -1.00 -88.56 363.96 5.64 -82.92 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: 0.45 Total: 15.98 kcal Atomic # 6 Polarization: -25.61 SS G_CDS: 6.06 Total: -19.55 kcal Atomic # 7 Polarization: -74.42 SS G_CDS: -1.32 Total: -75.74 kcal Atomic # 8 Polarization: -53.33 SS G_CDS: -1.52 Total: -54.85 kcal Atomic # 14 Polarization: 49.28 SS G_CDS: 1.96 Total: 51.24 kcal Total: -88.56 5.64 -82.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042786616.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.535 kcal (2) G-P(sol) polarization free energy of solvation -88.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds