Wall clock time and date at job start Wed Apr 1 2020 02:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99819 * 2 1 4 4 C 1.53005 * 109.47083 * 179.97438 * 3 2 1 5 5 O 1.42898 * 109.46833 * 65.00003 * 4 3 2 6 6 C 1.42901 * 113.99731 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.46844 * 180.02562 * 6 5 4 8 8 C 1.53000 * 109.47342 * 180.02562 * 7 6 5 9 9 N 1.46494 * 109.47693 * 179.97438 * 8 7 6 10 10 S 1.65597 * 120.00241 * 164.72209 * 9 8 7 11 11 O 1.42103 * 106.40620 * 178.54272 * 10 9 8 12 12 O 1.42100 * 106.40630 * 311.46546 * 10 9 8 13 13 C 1.76208 * 107.21734 * 65.00320 * 10 9 8 14 14 C 1.38632 * 119.74525 * 269.73112 * 13 10 9 15 15 C 1.37628 * 120.24207 * 179.72238 * 14 13 10 16 16 C 1.40708 * 119.74460 * 0.56531 * 15 14 13 17 17 C 1.41395 * 120.24350 * 179.68162 * 16 15 14 18 18 H 1.07999 * 120.00421 * 204.40366 * 17 16 15 19 19 C 1.39948 * 120.00045 * 24.41232 * 17 16 15 20 20 N 1.30828 * 119.99938 * 17.83864 * 19 17 16 21 21 Si 1.86804 * 120.00206 * 197.84763 * 19 17 16 22 22 H 1.48496 * 109.47170 * 89.99474 * 21 19 17 23 23 H 1.48494 * 109.47127 * 209.99890 * 21 19 17 24 24 H 1.48504 * 109.46764 * 329.99426 * 21 19 17 25 25 C 1.40718 * 119.51587 * 359.70628 * 16 15 14 26 26 C 1.37620 * 119.73960 * 0.02562 * 25 16 15 27 27 H 1.09000 * 109.47459 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47187 * 299.99853 * 1 2 3 29 29 H 1.09007 * 109.47215 * 59.99497 * 1 2 3 30 30 H 1.09005 * 109.46566 * 60.00567 * 3 2 1 31 31 H 1.08996 * 109.47779 * 300.00092 * 3 2 1 32 32 H 1.09001 * 109.46886 * 305.00631 * 4 3 2 33 33 H 1.08997 * 109.47284 * 185.00378 * 4 3 2 34 34 H 1.08997 * 109.46699 * 60.00855 * 6 5 4 35 35 H 1.08999 * 109.47571 * 300.00437 * 6 5 4 36 36 H 1.09001 * 109.47666 * 60.00668 * 7 6 5 37 37 H 1.09002 * 109.47489 * 300.00318 * 7 6 5 38 38 H 1.09011 * 109.47083 * 59.99469 * 8 7 6 39 39 H 1.08997 * 109.47087 * 300.00638 * 8 7 6 40 40 H 0.96999 * 119.99814 * 345.00344 * 9 8 7 41 41 H 1.07992 * 119.88185 * 359.96919 * 14 13 10 42 42 H 1.07997 * 120.12556 * 180.27286 * 15 14 13 43 43 H 0.96994 * 120.00050 * 180.02562 * 20 19 17 44 44 H 1.07995 * 120.13001 * 179.97438 * 25 16 15 45 45 H 1.08005 * 119.87252 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 8 3.9658 0.5793 -1.2201 6 6 5.3822 0.4198 -1.3220 7 6 5.7267 -0.2338 -2.6618 8 6 7.2431 -0.4052 -2.7708 9 7 7.5730 -1.0316 -4.0533 10 16 9.1308 -0.9995 -4.6141 11 8 9.1290 -1.7097 -5.8449 12 8 9.5730 0.3456 -4.4937 13 6 10.1078 -1.9466 -3.4946 14 6 10.7077 -1.3254 -2.4100 15 6 11.4683 -2.0563 -1.5261 16 6 11.6456 -3.4367 -1.7332 17 6 12.4304 -4.1965 -0.8354 18 1 12.8928 -5.1148 -1.1661 19 6 12.6079 -3.7588 0.4820 20 7 11.7962 -2.8674 0.9900 21 14 14.0038 -4.4472 1.5150 22 1 15.2141 -3.6058 1.3352 23 1 13.6079 -4.4456 2.9462 24 1 14.2990 -5.8375 1.0846 25 6 11.0367 -4.0555 -2.8406 26 6 10.2758 -3.3059 -3.7085 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 1.6885 1.8463 0.8901 31 1 1.6886 1.8465 -0.8899 32 1 3.8507 0.5685 0.8426 33 1 3.9784 2.1766 0.0903 34 1 5.7361 -0.2121 -0.5075 35 1 5.8632 1.3960 -1.2601 36 1 5.3728 0.3983 -3.4762 37 1 5.2457 -1.2100 -2.7242 38 1 7.5968 -1.0376 -1.9563 39 1 7.7245 0.5707 -2.7081 40 1 6.8782 -1.4617 -4.5759 41 1 10.5744 -0.2649 -2.2560 42 1 11.9311 -1.5713 -0.6794 43 1 11.9194 -2.5637 1.9029 44 1 11.1665 -5.1143 -3.0093 45 1 9.8071 -3.7787 -4.5590 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080713138.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:31 Heat of formation + Delta-G solvation = -187.488285 kcal Electronic energy + Delta-G solvation = -26961.284932 eV Core-core repulsion = 22876.249112 eV Total energy + Delta-G solvation = -4085.035819 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.133 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.48855 -39.36696 -38.36334 -38.10802 -36.81799 -36.73290 -35.79100 -32.66164 -32.05346 -31.27633 -30.64697 -27.60891 -27.17343 -25.83093 -23.50731 -23.31964 -22.94576 -22.57764 -20.32605 -19.41234 -18.61719 -18.20406 -17.95716 -17.75665 -17.22935 -17.06168 -16.70859 -16.32073 -16.22596 -15.84233 -15.65007 -15.39238 -15.10522 -14.93533 -14.60527 -14.10006 -13.95679 -13.70719 -13.57292 -13.54112 -13.16841 -13.08028 -13.00145 -12.89597 -12.87462 -12.62584 -12.59085 -12.36233 -12.20877 -12.02468 -11.96689 -11.86541 -11.53416 -11.31460 -11.22440 -10.64059 -10.54152 -10.35708 -9.77972 -9.53517 -8.86700 -6.63967 -0.28319 0.49518 1.07123 1.36206 1.43905 1.50689 2.11916 2.22736 2.51098 2.73074 2.88496 2.96047 3.54044 3.63163 3.98620 4.02164 4.05860 4.19840 4.26755 4.32772 4.34152 4.45479 4.48489 4.52414 4.56268 4.59354 4.61979 4.71577 4.75046 4.83962 4.86980 4.88616 4.96008 5.11786 5.16395 5.25441 5.27763 5.53695 5.60820 5.77576 5.94279 6.16042 6.17641 6.21372 6.31919 6.50149 6.69325 6.82112 8.08363 Molecular weight = 343.13amu Principal moments of inertia in cm(-1) A = 0.008916 B = 0.002562 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3139.832022 B =10926.943187 C =13280.805407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.418 6.418 3 C 0.060 3.940 4 C 0.054 3.946 5 O -0.403 6.403 6 C 0.060 3.940 7 C -0.114 4.114 8 C 0.119 3.881 9 N -1.111 6.111 10 S 2.730 3.270 11 O -1.002 7.002 12 O -1.001 7.001 13 C -0.796 4.796 14 C -0.019 4.019 15 C -0.207 4.207 16 C 0.109 3.891 17 C -0.466 4.466 18 H 0.089 0.911 19 C 0.035 3.965 20 N -0.793 5.793 21 Si 0.990 3.010 22 H -0.261 1.261 23 H -0.263 1.263 24 H -0.255 1.255 25 C -0.258 4.258 26 C -0.003 4.003 27 H 0.090 0.910 28 H 0.055 0.945 29 H 0.048 0.952 30 H 0.088 0.912 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.087 0.913 34 H 0.053 0.947 35 H 0.067 0.933 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.064 0.936 39 H 0.081 0.919 40 H 0.424 0.576 41 H 0.118 0.882 42 H 0.112 0.888 43 H 0.299 0.701 44 H 0.109 0.891 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.208 7.453 3.091 18.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.338 6.338 3 C -0.016 4.016 4 C -0.022 4.022 5 O -0.323 6.323 6 C -0.017 4.017 7 C -0.153 4.153 8 C -0.008 4.008 9 N -0.871 5.871 10 S 2.825 3.175 11 O -0.993 6.993 12 O -0.992 6.992 13 C -0.889 4.889 14 C -0.039 4.039 15 C -0.227 4.227 16 C 0.106 3.894 17 C -0.493 4.493 18 H 0.107 0.893 19 C -0.184 4.184 20 N -0.416 5.416 21 Si 0.810 3.190 22 H -0.185 1.185 23 H -0.187 1.187 24 H -0.179 1.179 25 C -0.278 4.278 26 C -0.023 4.023 27 H 0.108 0.892 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.106 0.894 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.105 0.895 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.082 0.918 39 H 0.099 0.901 40 H 0.260 0.740 41 H 0.136 0.864 42 H 0.130 0.870 43 H 0.110 0.890 44 H 0.127 0.873 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -15.902 7.909 2.509 17.936 hybrid contribution 0.428 -0.712 1.105 1.382 sum -15.474 7.197 3.614 17.445 Atomic orbital electron populations 1.22901 0.79628 1.03593 1.00909 1.87930 1.21404 1.28841 1.95613 1.22725 0.91888 0.84940 1.02093 1.22749 0.94000 0.98551 0.86881 1.87874 1.22561 1.82653 1.39167 1.22448 0.81248 1.00471 0.97505 1.21543 0.93412 1.02662 0.97692 1.21179 0.96938 0.98227 0.84411 1.55259 1.26735 1.72767 1.32380 1.00159 0.72356 0.72581 0.72382 1.93465 1.87031 1.75179 1.43577 1.93457 1.81602 1.36707 1.87395 1.29652 1.30247 1.07920 1.21078 1.20474 0.93740 0.98018 0.91678 1.21360 1.05783 0.94241 1.01338 1.18222 0.87540 0.92577 0.91070 1.20212 1.25649 1.07908 0.95519 0.89252 1.26973 0.98107 0.93974 0.99390 1.69835 1.31852 1.23283 1.16653 0.85065 0.77265 0.79835 0.76877 1.18511 1.18712 1.17878 1.21273 1.06944 0.98927 1.00703 1.20466 0.94015 0.91977 0.95795 0.89199 0.92606 0.93376 0.89382 0.92152 0.92718 0.89480 0.92842 0.91501 0.89717 0.90356 0.91794 0.90088 0.73965 0.86389 0.87010 0.89025 0.87253 0.85691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 113.37 1.25 1.58 16 2 O -0.42 -8.67 10.67 -144.34 -1.54 -10.21 16 3 C 0.06 0.92 6.32 71.98 0.45 1.37 16 4 C 0.05 0.93 6.32 71.98 0.45 1.39 16 5 O -0.40 -9.23 10.31 -144.34 -1.49 -10.72 16 6 C 0.06 1.25 5.94 71.98 0.43 1.68 16 7 C -0.11 -2.44 5.73 30.59 0.18 -2.26 16 8 C 0.12 3.05 6.22 86.38 0.54 3.59 16 9 N -1.11 -30.99 6.00 -187.49 -1.12 -32.11 16 10 S 2.73 100.12 5.73 -56.49 -0.32 99.80 16 11 O -1.00 -40.44 17.26 -128.00 -2.21 -42.65 16 12 O -1.00 -40.82 16.72 -128.00 -2.14 -42.96 16 13 C -0.80 -34.35 5.97 22.46 0.13 -34.21 16 14 C -0.02 -0.88 9.49 22.22 0.21 -0.67 16 15 C -0.21 -10.50 8.70 22.73 0.20 -10.30 16 16 C 0.11 5.67 5.57 -21.29 -0.12 5.55 16 17 C -0.47 -23.28 9.05 23.46 0.21 -23.07 16 18 H 0.09 4.25 7.91 -2.91 -0.02 4.22 16 19 C 0.04 1.62 5.14 85.26 0.44 2.05 16 20 N -0.79 -37.60 10.95 21.83 0.24 -37.36 16 21 Si 0.99 34.42 29.60 68.60 2.03 36.45 16 22 H -0.26 -8.89 7.11 99.48 0.71 -8.19 16 23 H -0.26 -8.60 7.11 99.48 0.71 -7.89 16 24 H -0.26 -8.67 7.11 99.48 0.71 -7.96 16 25 C -0.26 -12.40 9.80 22.73 0.22 -12.17 16 26 C 0.00 -0.12 9.49 22.22 0.21 0.09 16 27 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 30 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 39 H 0.08 2.05 7.75 -2.39 -0.02 2.04 16 40 H 0.42 9.65 8.65 -96.75 -0.84 8.81 16 41 H 0.12 4.92 7.59 -2.91 -0.02 4.89 16 42 H 0.11 5.78 6.16 -2.91 -0.02 5.76 16 43 H 0.30 12.52 8.30 -92.71 -0.77 11.75 16 44 H 0.11 4.85 8.06 -2.91 -0.02 4.83 16 45 H 0.13 4.92 7.60 -2.91 -0.02 4.89 16 Total: -1.00 -67.30 393.02 -1.59 -68.90 By element: Atomic # 1 Polarization: 36.09 SS G_CDS: 0.15 Total: 36.24 kcal Atomic # 6 Polarization: -70.19 SS G_CDS: 4.81 Total: -65.38 kcal Atomic # 7 Polarization: -68.58 SS G_CDS: -0.89 Total: -69.47 kcal Atomic # 8 Polarization: -99.17 SS G_CDS: -7.38 Total: -106.54 kcal Atomic # 14 Polarization: 34.42 SS G_CDS: 2.03 Total: 36.45 kcal Atomic # 16 Polarization: 100.12 SS G_CDS: -0.32 Total: 99.80 kcal Total: -67.30 -1.59 -68.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080713138.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.590 kcal (2) G-P(sol) polarization free energy of solvation -67.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds