Wall clock time and date at job start Wed Apr 1 2020 02:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35899 * 117.00074 * 2 1 4 4 C 1.38755 * 120.05518 * 0.25114 * 3 2 1 5 5 C 1.38123 * 119.94274 * 180.32180 * 4 3 2 6 6 C 1.38294 * 120.05682 * 359.68027 * 5 4 3 7 7 C 1.38251 * 120.10926 * 0.02707 * 6 5 4 8 8 C 1.38165 * 120.05468 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.02644 * 179.97438 * 8 7 6 10 10 N 1.46497 * 109.47155 * 97.81581 * 9 8 7 11 11 C 1.46498 * 119.99861 * 85.44412 * 10 9 8 12 12 C 1.53002 * 109.47573 * 79.00331 * 11 10 9 13 13 O 1.42901 * 109.46809 * 64.99650 * 12 11 10 14 14 S 1.65600 * 120.00278 * 265.43861 * 10 9 8 15 15 O 1.42108 * 104.27411 * 32.55136 * 14 10 9 16 16 O 1.42096 * 104.28050 * 160.40350 * 14 10 9 17 17 C 1.81401 * 104.45247 * 276.48202 * 14 10 9 18 18 C 1.52993 * 109.47223 * 179.97438 * 17 14 10 19 19 C 1.50699 * 109.47091 * 179.97438 * 18 17 14 20 20 H 1.08000 * 119.99832 * 0.02562 * 19 18 17 21 21 C 1.37885 * 120.00022 * 179.97438 * 19 18 17 22 22 N 1.31509 * 119.99698 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99990 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47156 * 59.99680 * 23 21 19 25 25 H 1.48494 * 109.47311 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47091 * 300.00271 * 23 21 19 27 27 H 1.08997 * 109.46917 * 299.99940 * 1 2 3 28 28 H 1.08995 * 109.47230 * 59.99854 * 1 2 3 29 29 H 1.08998 * 109.47282 * 180.02562 * 1 2 3 30 30 H 1.08000 * 120.03062 * 0.02562 * 4 3 2 31 31 H 1.08001 * 119.97347 * 179.70360 * 5 4 3 32 32 H 1.07993 * 119.94521 * 180.02562 * 6 5 4 33 33 H 1.07996 * 119.96910 * 179.97438 * 7 6 5 34 34 H 1.09003 * 109.46844 * 337.81304 * 9 8 7 35 35 H 1.09003 * 109.47110 * 217.82014 * 9 8 7 36 36 H 1.09003 * 109.47008 * 199.00591 * 11 10 9 37 37 H 1.08996 * 109.47311 * 318.99783 * 11 10 9 38 38 H 1.08993 * 109.46830 * 185.00003 * 12 11 10 39 39 H 1.09000 * 109.46838 * 304.99850 * 12 11 10 40 40 H 0.96705 * 113.99503 * 180.02562 * 13 12 11 41 41 H 1.09000 * 109.46424 * 300.00003 * 17 14 10 42 42 H 1.09003 * 109.46898 * 59.99220 * 17 14 10 43 43 H 1.08995 * 109.47205 * 300.00082 * 18 17 14 44 44 H 1.09008 * 109.46893 * 59.99767 * 18 17 14 45 45 H 0.96997 * 119.99721 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0053 5 6 1.9208 3.6047 -0.0015 6 6 3.3020 3.6758 -0.0068 7 6 4.0560 2.5170 -0.0059 8 6 3.4311 1.2848 -0.0003 9 6 4.2537 0.0221 0.0001 10 7 4.3680 -0.4859 1.3694 11 6 3.3190 -1.3471 1.9210 12 6 3.5002 -2.7724 1.3951 13 8 4.7289 -3.3097 1.8886 14 16 5.6828 -0.0869 2.2936 15 8 6.0303 1.2217 1.8620 16 8 5.2598 -0.3298 3.6283 17 6 6.9594 -1.2788 1.8034 18 6 8.2396 -1.0103 2.5970 19 6 9.2998 -2.0009 2.1901 20 1 9.0824 -2.7471 1.4402 21 6 10.5478 -1.9539 2.7746 22 7 10.8126 -1.0450 3.6873 23 14 11.8623 -3.1814 2.2697 24 1 12.1405 -3.0398 0.8179 25 1 13.1053 -2.9201 3.0391 26 1 11.3864 -4.5598 2.5503 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 0.2128 2.3204 0.0098 31 1 1.3340 4.5114 -0.0022 32 1 3.7922 4.6380 -0.0116 33 1 5.1344 2.5751 -0.0105 34 1 5.2479 0.2361 -0.3923 35 1 3.7695 -0.7272 -0.6263 36 1 3.3862 -1.3500 3.0090 37 1 2.3424 -0.9695 1.6184 38 1 2.6703 -3.3927 1.7335 39 1 3.5218 -2.7575 0.3054 40 1 4.9096 -4.2129 1.5941 41 1 6.6096 -2.2906 2.0087 42 1 7.1640 -1.1743 0.7379 43 1 8.5890 0.0015 2.3914 44 1 8.0351 -1.1145 3.6626 45 1 11.6904 -1.0122 4.0987 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159353355.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:39:10 Heat of formation + Delta-G solvation = -133.482778 kcal Electronic energy + Delta-G solvation = -29298.242506 eV Core-core repulsion = 25215.548541 eV Total energy + Delta-G solvation = -4082.693965 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.133 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.40218 -37.67790 -37.36855 -36.39761 -35.48353 -35.13757 -33.73427 -31.79629 -30.99458 -30.15501 -28.90206 -27.48669 -25.69982 -25.41160 -22.60274 -22.09747 -21.55490 -21.05314 -18.49675 -18.01941 -17.58885 -17.27925 -16.43497 -16.28421 -16.16307 -15.91914 -15.61681 -15.11449 -14.73890 -14.52938 -14.48321 -14.31288 -13.94610 -13.62896 -13.19509 -13.08284 -12.67563 -12.59098 -12.40077 -12.26704 -12.03490 -11.71787 -11.58010 -11.50679 -11.35987 -11.32093 -11.08568 -10.98031 -10.90076 -10.83307 -10.81545 -10.29387 -10.21336 -9.89430 -9.61992 -9.20422 -8.93514 -8.64833 -8.40752 -8.21977 -6.03042 -4.07514 0.95784 1.31088 1.41179 3.07154 3.20519 3.32429 3.36803 3.38873 3.78462 4.32031 4.41829 4.56007 4.64217 4.68170 4.80158 4.86439 4.88348 4.96945 5.11276 5.16583 5.24126 5.25090 5.31787 5.32578 5.35258 5.44623 5.56134 5.64307 5.82002 5.89227 5.97069 6.01396 6.08502 6.20754 6.29791 6.43268 6.58691 6.76099 6.79110 6.86816 7.24891 7.45063 7.51749 7.72757 7.90697 8.30080 8.95698 9.56020 11.08201 Molecular weight = 343.13amu Principal moments of inertia in cm(-1) A = 0.017129 B = 0.003342 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.256532 B = 8377.181151 C = 9314.787693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.313 6.313 3 C 0.137 3.863 4 C -0.217 4.217 5 C -0.081 4.081 6 C -0.160 4.160 7 C -0.050 4.050 8 C -0.137 4.137 9 C 0.176 3.824 10 N -0.991 5.991 11 C 0.112 3.888 12 C 0.058 3.942 13 O -0.568 6.568 14 S 2.590 3.410 15 O -0.969 6.969 16 O -0.967 6.967 17 C -0.586 4.586 18 C 0.030 3.970 19 C -0.514 4.514 20 H 0.060 0.940 21 C 0.056 3.944 22 N -0.892 5.892 23 Si 0.899 3.101 24 H -0.276 1.276 25 H -0.286 1.286 26 H -0.276 1.276 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.098 0.902 30 H 0.124 0.876 31 H 0.121 0.879 32 H 0.124 0.876 33 H 0.144 0.856 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.050 0.950 39 H 0.049 0.951 40 H 0.380 0.620 41 H 0.139 0.861 42 H 0.111 0.889 43 H 0.029 0.971 44 H 0.030 0.970 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.129 1.796 -10.780 25.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.226 6.226 3 C 0.091 3.909 4 C -0.236 4.236 5 C -0.100 4.100 6 C -0.178 4.178 7 C -0.069 4.069 8 C -0.139 4.139 9 C 0.050 3.950 10 N -0.825 5.825 11 C -0.013 4.013 12 C -0.021 4.021 13 O -0.374 6.374 14 S 2.690 3.310 15 O -0.959 6.959 16 O -0.957 6.957 17 C -0.720 4.720 18 C -0.010 4.010 19 C -0.554 4.554 20 H 0.079 0.921 21 C -0.146 4.146 22 N -0.531 5.531 23 Si 0.726 3.274 24 H -0.202 1.202 25 H -0.212 1.212 26 H -0.201 1.201 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.116 0.884 30 H 0.142 0.858 31 H 0.139 0.861 32 H 0.142 0.858 33 H 0.162 0.838 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.116 0.884 37 H 0.117 0.883 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.227 0.773 41 H 0.157 0.843 42 H 0.129 0.871 43 H 0.047 0.953 44 H 0.049 0.951 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -22.905 2.969 -9.740 25.066 hybrid contribution 0.477 -1.509 -0.899 1.820 sum -22.429 1.460 -10.639 24.867 Atomic orbital electron populations 1.23034 0.78827 1.03764 1.01282 1.86060 1.20948 1.27011 1.88593 1.18800 0.91651 0.84048 0.96363 1.21134 0.99655 0.92462 1.10328 1.20935 0.94768 0.96807 0.97475 1.21119 0.93778 0.98720 1.04193 1.21252 1.01256 0.90687 0.93693 1.19659 0.90724 0.96679 1.06875 1.19884 0.99592 0.92051 0.83464 1.57688 1.37009 1.63016 1.24795 1.21515 0.92194 0.87311 1.00310 1.22658 0.86524 0.95176 0.97792 1.86534 1.40253 1.34495 1.76090 1.05682 0.74987 0.76321 0.74053 1.93497 1.83858 1.36113 1.82453 1.93493 1.80334 1.86842 1.35062 1.30473 1.14344 1.16883 1.10258 1.18927 0.88604 0.98602 0.94820 1.20979 0.96033 1.15415 1.22947 0.92146 1.25072 0.98615 0.95899 0.95005 1.69951 1.22454 1.34046 1.26634 0.86551 0.80773 0.81445 0.78592 1.20157 1.21170 1.20126 0.92731 0.92814 0.88350 0.85786 0.86109 0.85818 0.83832 0.89487 0.89618 0.88358 0.88336 0.93209 0.93325 0.77273 0.84328 0.87054 0.95275 0.95143 0.92606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.31 -3.10 7.21 -19.42 -0.14 -3.24 16 3 C 0.14 1.61 6.54 -39.22 -0.26 1.36 16 4 C -0.22 -2.26 9.04 -39.43 -0.36 -2.62 16 5 C -0.08 -0.85 10.04 -39.60 -0.40 -1.25 16 6 C -0.16 -1.91 10.04 -39.56 -0.40 -2.31 16 7 C -0.05 -0.69 8.91 -39.60 -0.35 -1.05 16 8 C -0.14 -1.83 5.45 -104.47 -0.57 -2.40 16 9 C 0.18 2.29 5.04 -5.19 -0.03 2.26 16 10 N -0.99 -15.02 2.66 -115.66 -0.31 -15.33 16 11 C 0.11 1.49 6.06 -4.04 -0.02 1.46 16 12 C 0.06 0.62 7.32 37.16 0.27 0.90 16 13 O -0.57 -7.35 11.21 -35.23 -0.39 -7.75 16 14 S 2.59 51.54 5.34 -107.50 -0.57 50.96 16 15 O -0.97 -20.67 15.64 -57.54 -0.90 -21.57 16 16 O -0.97 -22.17 16.36 -57.54 -0.94 -23.11 16 17 C -0.59 -12.27 6.03 37.15 0.22 -12.05 16 18 C 0.03 0.79 4.98 -27.89 -0.14 0.66 16 19 C -0.51 -14.66 9.11 -34.44 -0.31 -14.98 16 20 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 21 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 22 N -0.89 -27.23 13.29 55.43 0.74 -26.50 16 23 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 H 0.05 0.31 7.65 -51.93 -0.40 -0.08 16 28 H 0.05 0.28 7.67 -51.93 -0.40 -0.12 16 29 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.12 0.97 6.30 -52.49 -0.33 0.64 16 31 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 32 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 33 H 0.14 2.08 7.25 -52.49 -0.38 1.70 16 34 H 0.09 1.09 7.69 -51.93 -0.40 0.69 16 35 H 0.09 0.93 7.16 -51.93 -0.37 0.56 16 36 H 0.10 1.50 6.65 -51.93 -0.35 1.15 16 37 H 0.10 1.13 5.35 -51.93 -0.28 0.85 16 38 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.05 0.46 7.57 -51.93 -0.39 0.07 16 40 H 0.38 3.28 9.12 45.56 0.42 3.69 16 41 H 0.14 2.78 5.69 -51.92 -0.30 2.48 16 42 H 0.11 2.09 8.14 -51.92 -0.42 1.66 16 43 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.03 0.87 8.14 -51.92 -0.42 0.45 16 45 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 377.38 15.07 5.69 5.69 Total: -1.00 -37.22 377.38 -8.97 -46.19 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -5.67 Total: 5.38 kcal Atomic # 6 Polarization: -25.89 SS G_CDS: -1.44 Total: -27.34 kcal Atomic # 7 Polarization: -42.26 SS G_CDS: 0.43 Total: -41.83 kcal Atomic # 8 Polarization: -53.29 SS G_CDS: -2.38 Total: -55.67 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: 51.54 SS G_CDS: -0.57 Total: 50.96 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -37.22 -8.97 -46.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159353355.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.290 kcal (2) G-P(sol) polarization free energy of solvation -37.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds