Wall clock time and date at job start Wed Apr 1 2020 02:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35990 * 116.99881 * 2 1 4 4 C 1.38962 * 119.90624 * 0.03042 * 3 2 1 5 5 C 1.38033 * 120.33728 * 179.74310 * 4 3 2 6 6 C 1.38679 * 120.14788 * 0.50360 * 5 4 3 7 7 O 1.35730 * 120.10054 * 179.74352 * 6 5 4 8 8 C 1.40096 * 119.80666 * 359.47331 * 6 5 4 9 9 C 1.47537 * 120.16182 * 180.29685 * 8 6 5 10 10 O 1.21581 * 120.00352 * 359.97438 * 9 8 6 11 11 N 1.34783 * 119.99696 * 180.02562 * 9 8 6 12 12 C 1.46498 * 120.00084 * 179.97438 * 11 9 8 13 13 C 1.50695 * 109.47027 * 179.97438 * 12 11 9 14 14 C 1.38305 * 119.92869 * 269.72352 * 13 12 11 15 15 C 1.38104 * 120.06541 * 179.72482 * 14 13 12 16 16 C 1.38875 * 119.93042 * 0.57402 * 15 14 13 17 17 O 1.35758 * 120.06647 * 179.67930 * 16 15 14 18 18 C 1.34838 * 116.99595 * 174.48599 * 17 16 15 19 19 H 1.08000 * 120.00077 * 5.05701 * 18 17 16 20 20 C 1.38655 * 119.99467 * 185.05732 * 18 17 16 21 21 N 1.31552 * 120.00284 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99353 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47359 * 90.00200 * 22 20 18 24 24 H 1.48501 * 109.46763 * 209.99988 * 22 20 18 25 25 H 1.48491 * 109.47273 * 329.99764 * 22 20 18 26 26 C 1.38877 * 119.86252 * 359.70133 * 16 15 14 27 27 C 1.38100 * 119.93351 * 0.02562 * 26 16 15 28 28 C 1.38235 * 119.90527 * 180.02562 * 3 2 1 29 29 H 1.08996 * 109.46759 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46941 * 299.99655 * 1 2 3 31 31 H 1.08998 * 109.47301 * 59.99501 * 1 2 3 32 32 H 1.07999 * 119.83679 * 0.02562 * 4 3 2 33 33 H 1.07999 * 119.93216 * 180.24952 * 5 4 3 34 34 H 0.96699 * 113.99985 * 269.73382 * 7 6 5 35 35 H 0.97005 * 119.99576 * 359.97438 * 11 9 8 36 36 H 1.08997 * 109.47065 * 299.99722 * 12 11 9 37 37 H 1.08995 * 109.47085 * 59.99616 * 12 11 9 38 38 H 1.07994 * 119.96432 * 359.97438 * 14 13 12 39 39 H 1.07996 * 120.03306 * 180.27192 * 15 14 13 40 40 H 0.96998 * 120.00048 * 179.97438 * 21 20 18 41 41 H 1.08002 * 120.03152 * 179.97438 * 26 16 15 42 42 H 1.07995 * 119.96627 * 180.02562 * 27 26 16 43 43 H 1.07994 * 120.07448 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2877 2.3759 0.0006 5 6 1.9050 3.6104 0.0060 6 6 3.2891 3.6971 0.0002 7 8 3.8951 4.9116 0.0002 8 6 4.0600 2.5273 0.0001 9 6 5.5331 2.6104 0.0006 10 8 6.0808 3.6958 0.0007 11 7 6.2716 1.4829 0.0000 12 6 7.7342 1.5652 -0.0001 13 6 8.3156 0.1750 -0.0002 14 6 8.5872 -0.4595 1.1984 15 6 9.1147 -1.7358 1.2016 16 6 9.3836 -2.3775 -0.0003 17 8 9.9082 -3.6296 -0.0003 18 6 10.0382 -4.2387 -1.1962 19 1 9.8077 -3.7010 -2.1040 20 6 10.4679 -5.5555 -1.2604 21 7 10.7482 -6.2106 -0.1546 22 14 10.6487 -6.3991 -2.9172 23 1 12.0244 -6.1856 -3.4340 24 1 10.3988 -7.8546 -2.7614 25 1 9.6666 -5.8278 -3.8733 26 6 9.1150 -1.7355 -1.2021 27 6 8.5823 -0.4614 -1.1988 28 6 3.4270 1.2818 -0.0005 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 0.2094 2.3145 0.0016 33 1 1.3089 4.5110 0.0105 34 1 4.0706 5.2636 -0.8832 35 1 5.8345 0.6169 -0.0004 36 1 8.0680 2.0991 -0.8898 37 1 8.0682 2.0983 0.8901 38 1 8.3828 0.0421 2.1327 39 1 9.3225 -2.2324 2.1378 40 1 11.0485 -7.1318 -0.1995 41 1 9.3234 -2.2319 -2.1384 42 1 8.3728 0.0381 -2.1330 43 1 4.0149 0.3759 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170804103.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:40:43 Heat of formation + Delta-G solvation = -85.912681 kcal Electronic energy + Delta-G solvation = -28047.202636 eV Core-core repulsion = 23831.127514 eV Total energy + Delta-G solvation = -4216.075122 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.130 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.89137 -39.61929 -39.09066 -38.23001 -36.80890 -36.12280 -34.39533 -32.42607 -31.89300 -30.28671 -29.98304 -29.44529 -27.47156 -26.01036 -24.97583 -23.76881 -22.53523 -22.05664 -20.68254 -20.57736 -18.91760 -18.38772 -18.07229 -17.12788 -17.02919 -16.58135 -16.18267 -15.72609 -15.56247 -15.19462 -14.71735 -14.57586 -14.50451 -14.35578 -14.18758 -13.70949 -13.64043 -13.39514 -13.06931 -12.85933 -12.83796 -12.77922 -12.60482 -12.09828 -11.77300 -11.68941 -11.40474 -11.24129 -10.99353 -10.92174 -10.79935 -10.69160 -10.49358 -9.85507 -9.50056 -9.42919 -8.95645 -8.91398 -8.42276 -8.28695 -7.33269 -6.53203 -4.12109 0.44068 0.91871 2.05717 2.12993 2.69333 2.83298 3.07538 3.09198 3.14092 3.33778 3.47103 3.90234 3.97999 4.30364 4.37556 4.51017 4.65400 4.74954 4.82987 4.97071 5.01294 5.02881 5.09903 5.16008 5.23278 5.42053 5.44500 5.55445 5.66177 5.80184 5.81954 5.87444 5.99261 6.08448 6.12334 6.34693 6.48155 6.59971 6.80247 6.91926 6.95390 7.13854 7.26896 7.34913 7.50380 7.56972 7.71553 7.91485 8.22211 8.92136 9.60271 10.64325 Molecular weight = 343.13amu Principal moments of inertia in cm(-1) A = 0.012749 B = 0.002235 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.729161 B =12523.958182 C =13949.900125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.313 6.313 3 C 0.112 3.888 4 C -0.169 4.169 5 C -0.117 4.117 6 C 0.129 3.871 7 O -0.475 6.475 8 C -0.122 4.122 9 C 0.554 3.446 10 O -0.525 6.525 11 N -0.717 5.717 12 C 0.180 3.820 13 C -0.216 4.216 14 C -0.054 4.054 15 C -0.195 4.195 16 C 0.161 3.839 17 O -0.173 6.173 18 C -0.393 4.393 19 H 0.094 0.906 20 C 0.040 3.960 21 N -0.859 5.859 22 Si 0.942 3.058 23 H -0.272 1.272 24 H -0.277 1.277 25 H -0.267 1.267 26 C -0.237 4.237 27 C -0.050 4.050 28 C -0.104 4.104 29 H 0.102 0.898 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.136 0.864 33 H 0.138 0.862 34 H 0.392 0.608 35 H 0.401 0.599 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.113 0.887 39 H 0.118 0.882 40 H 0.271 0.729 41 H 0.128 0.872 42 H 0.108 0.892 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.994 15.254 -1.880 25.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.226 6.226 3 C 0.067 3.933 4 C -0.188 4.188 5 C -0.135 4.135 6 C 0.083 3.917 7 O -0.285 6.285 8 C -0.126 4.126 9 C 0.340 3.660 10 O -0.403 6.403 11 N -0.369 5.369 12 C 0.058 3.942 13 C -0.217 4.217 14 C -0.073 4.073 15 C -0.214 4.214 16 C 0.106 3.894 17 O -0.076 6.076 18 C -0.470 4.470 19 H 0.111 0.889 20 C -0.165 4.165 21 N -0.494 5.494 22 Si 0.766 3.234 23 H -0.198 1.198 24 H -0.202 1.202 25 H -0.191 1.191 26 C -0.256 4.256 27 C -0.069 4.069 28 C -0.123 4.123 29 H 0.121 0.879 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.154 0.846 33 H 0.156 0.844 34 H 0.249 0.751 35 H 0.237 0.763 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.131 0.869 39 H 0.136 0.864 40 H 0.081 0.919 41 H 0.146 0.854 42 H 0.126 0.874 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -19.330 15.381 -1.024 24.724 hybrid contribution -0.379 -0.778 -1.346 1.600 sum -19.710 14.604 -2.370 24.645 Atomic orbital electron populations 1.23103 0.78135 1.04355 1.01303 1.86154 1.21534 1.26191 1.88725 1.18818 0.91984 0.84584 0.97955 1.21292 1.00426 0.91701 1.05368 1.21214 0.93558 0.98031 1.00715 1.18338 0.89625 0.84702 0.99080 1.84803 1.80136 1.30295 1.33308 1.20289 0.93975 0.92984 1.05343 1.17973 0.85984 0.84610 0.77412 1.90798 1.72825 1.27419 1.49243 1.46317 1.07734 1.08539 1.74315 1.20002 0.77800 0.94407 1.01974 1.19204 1.11999 0.96805 0.93740 1.20545 0.96571 0.93538 0.96611 1.20218 1.08759 0.96122 0.96323 1.19442 0.90264 0.86382 0.93315 1.83984 1.68007 1.22430 1.33138 1.21359 1.47037 0.95502 0.83053 0.88914 1.25318 0.96320 0.95435 0.99385 1.70033 1.41034 1.11199 1.27085 0.85695 0.79074 0.78602 0.79986 1.19796 1.20184 1.19124 1.21156 1.09313 0.96643 0.98497 1.20641 0.95943 0.93909 0.96420 1.20537 0.91904 0.97493 1.02392 0.87922 0.92534 0.92560 0.84633 0.84426 0.75121 0.76316 0.91397 0.91338 0.86909 0.86352 0.91872 0.85407 0.87377 0.84081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.31 -2.94 10.49 -19.71 -0.21 -3.15 16 3 C 0.11 1.08 6.68 -39.31 -0.26 0.82 16 4 C -0.17 -1.33 9.02 -39.39 -0.36 -1.68 16 5 C -0.12 -0.98 9.97 -39.49 -0.39 -1.37 16 6 C 0.13 1.41 6.72 -38.72 -0.26 1.15 16 7 O -0.48 -5.37 11.57 -40.81 -0.47 -5.84 16 8 C -0.12 -1.46 5.88 -104.86 -0.62 -2.07 16 9 C 0.55 7.76 7.76 -12.47 -0.10 7.67 16 10 O -0.53 -8.83 15.15 -16.62 -0.25 -9.08 16 11 N -0.72 -9.38 5.50 -62.54 -0.34 -9.72 16 12 C 0.18 2.55 5.80 -5.20 -0.03 2.52 16 13 C -0.22 -3.47 5.25 -104.58 -0.55 -4.02 16 14 C -0.05 -0.91 9.69 -39.61 -0.38 -1.29 16 15 C -0.19 -3.93 9.99 -39.39 -0.39 -4.33 16 16 C 0.16 3.73 6.65 -39.11 -0.26 3.47 16 17 O -0.17 -4.79 9.76 0.00 0.00 -4.79 16 18 C -0.39 -10.68 9.49 30.89 0.29 -10.39 16 19 H 0.09 2.32 5.20 -52.49 -0.27 2.05 16 20 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 21 N -0.86 -24.66 13.67 55.48 0.76 -23.90 16 22 Si 0.94 19.99 29.55 -169.99 -5.02 14.97 16 23 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 24 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 25 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 26 C -0.24 -4.89 9.17 -39.40 -0.36 -5.25 16 27 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 28 C -0.10 -1.11 9.47 -39.03 -0.37 -1.48 16 29 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.23 7.65 -51.93 -0.40 -0.17 16 31 H 0.06 0.22 7.66 -51.93 -0.40 -0.18 16 32 H 0.14 0.69 6.27 -52.49 -0.33 0.36 16 33 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 34 H 0.39 2.90 9.06 45.56 0.41 3.31 16 35 H 0.40 4.76 6.49 -40.82 -0.27 4.49 16 36 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 37 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 38 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 39 H 0.12 2.32 8.06 -52.49 -0.42 1.90 16 40 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 41 H 0.13 2.66 5.64 -52.49 -0.30 2.36 16 42 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 43 H 0.14 1.39 6.40 -52.49 -0.34 1.06 16 LS Contribution 372.77 15.07 5.62 5.62 Total: -1.00 -33.66 372.77 -7.42 -41.08 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -3.97 Total: 10.22 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: -3.53 Total: -15.40 kcal Atomic # 7 Polarization: -34.04 SS G_CDS: 0.41 Total: -33.63 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -0.93 Total: -22.86 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.66 -7.42 -41.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170804103.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.834 kcal (2) G-P(sol) polarization free energy of solvation -33.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds