Wall clock time and date at job start Wed Apr 1 2020 02:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35990 * 116.99881 * 2 1 4 4 C 1.38962 * 119.90624 * 0.03042 * 3 2 1 5 5 C 1.38033 * 120.33728 * 179.74310 * 4 3 2 6 6 C 1.38679 * 120.14788 * 0.50360 * 5 4 3 7 7 O 1.35730 * 120.10054 * 179.74352 * 6 5 4 8 8 C 1.40096 * 119.80666 * 359.47331 * 6 5 4 9 9 C 1.47537 * 120.16182 * 180.29685 * 8 6 5 10 10 O 1.21581 * 120.00352 * 359.97438 * 9 8 6 11 11 N 1.34783 * 119.99696 * 180.02562 * 9 8 6 12 12 C 1.46498 * 120.00084 * 179.97438 * 11 9 8 13 13 C 1.50695 * 109.47027 * 179.97438 * 12 11 9 14 14 C 1.38305 * 119.92869 * 269.72352 * 13 12 11 15 15 C 1.38104 * 120.06541 * 179.72482 * 14 13 12 16 16 C 1.38875 * 119.93042 * 0.57402 * 15 14 13 17 17 O 1.35758 * 120.06647 * 179.67930 * 16 15 14 18 18 C 1.34838 * 116.99595 * 174.48599 * 17 16 15 19 19 H 1.08000 * 120.00077 * 5.05701 * 18 17 16 20 20 C 1.38655 * 119.99467 * 185.05732 * 18 17 16 21 21 N 1.31552 * 120.00284 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99353 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47359 * 90.00200 * 22 20 18 24 24 H 1.48501 * 109.46763 * 209.99988 * 22 20 18 25 25 H 1.48491 * 109.47273 * 329.99764 * 22 20 18 26 26 C 1.38877 * 119.86252 * 359.70133 * 16 15 14 27 27 C 1.38100 * 119.93351 * 0.02562 * 26 16 15 28 28 C 1.38235 * 119.90527 * 180.02562 * 3 2 1 29 29 H 1.08996 * 109.46759 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46941 * 299.99655 * 1 2 3 31 31 H 1.08998 * 109.47301 * 59.99501 * 1 2 3 32 32 H 1.07999 * 119.83679 * 0.02562 * 4 3 2 33 33 H 1.07999 * 119.93216 * 180.24952 * 5 4 3 34 34 H 0.96699 * 113.99985 * 269.73382 * 7 6 5 35 35 H 0.97005 * 119.99576 * 359.97438 * 11 9 8 36 36 H 1.08997 * 109.47065 * 299.99722 * 12 11 9 37 37 H 1.08995 * 109.47085 * 59.99616 * 12 11 9 38 38 H 1.07994 * 119.96432 * 359.97438 * 14 13 12 39 39 H 1.07996 * 120.03306 * 180.27192 * 15 14 13 40 40 H 0.96998 * 120.00048 * 179.97438 * 21 20 18 41 41 H 1.08002 * 120.03152 * 179.97438 * 26 16 15 42 42 H 1.07995 * 119.96627 * 180.02562 * 27 26 16 43 43 H 1.07994 * 120.07448 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2877 2.3759 0.0006 5 6 1.9050 3.6104 0.0060 6 6 3.2891 3.6971 0.0002 7 8 3.8951 4.9116 0.0002 8 6 4.0600 2.5273 0.0001 9 6 5.5331 2.6104 0.0006 10 8 6.0808 3.6958 0.0007 11 7 6.2716 1.4829 0.0000 12 6 7.7342 1.5652 -0.0001 13 6 8.3156 0.1750 -0.0002 14 6 8.5872 -0.4595 1.1984 15 6 9.1147 -1.7358 1.2016 16 6 9.3836 -2.3775 -0.0003 17 8 9.9082 -3.6296 -0.0003 18 6 10.0382 -4.2387 -1.1962 19 1 9.8077 -3.7010 -2.1040 20 6 10.4679 -5.5555 -1.2604 21 7 10.7482 -6.2106 -0.1546 22 14 10.6487 -6.3991 -2.9172 23 1 12.0244 -6.1856 -3.4340 24 1 10.3988 -7.8546 -2.7614 25 1 9.6666 -5.8278 -3.8733 26 6 9.1150 -1.7355 -1.2021 27 6 8.5823 -0.4614 -1.1988 28 6 3.4270 1.2818 -0.0005 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 0.2094 2.3145 0.0016 33 1 1.3089 4.5110 0.0105 34 1 4.0706 5.2636 -0.8832 35 1 5.8345 0.6169 -0.0004 36 1 8.0680 2.0991 -0.8898 37 1 8.0682 2.0983 0.8901 38 1 8.3828 0.0421 2.1327 39 1 9.3225 -2.2324 2.1378 40 1 11.0485 -7.1318 -0.1995 41 1 9.3234 -2.2319 -2.1384 42 1 8.3728 0.0381 -2.1330 43 1 4.0149 0.3759 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170804103.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:40:42 Heat of formation + Delta-G solvation = -109.275615 kcal Electronic energy + Delta-G solvation = -28048.215729 eV Core-core repulsion = 23831.127514 eV Total energy + Delta-G solvation = -4217.088215 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.130 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.70083 -40.89091 -40.33128 -39.14757 -38.39368 -36.87113 -35.63842 -34.29160 -32.80137 -31.84442 -31.15276 -30.32239 -28.01231 -27.67268 -26.44993 -24.64546 -23.65833 -23.33827 -22.15839 -21.55129 -19.92576 -19.73221 -19.12245 -18.83885 -17.84105 -17.52617 -16.84620 -16.63450 -16.58904 -16.35168 -16.31753 -15.86514 -15.81675 -15.54558 -15.32984 -15.04121 -15.01971 -14.49047 -14.31754 -14.19767 -13.87196 -13.66279 -13.42847 -13.34093 -13.18491 -13.03703 -12.56879 -12.38031 -12.35463 -12.24438 -12.11884 -11.83377 -11.74149 -11.20889 -10.94101 -10.77643 -10.30267 -10.02439 -9.82138 -9.12742 -9.02570 -8.48527 -6.16864 -0.33697 0.21484 0.52561 0.56689 1.35907 1.44208 1.53098 1.79305 2.13664 2.17307 2.35377 2.64084 2.84639 3.16430 3.26939 3.47409 3.61872 3.69020 3.86694 4.01847 4.07401 4.16303 4.20521 4.31413 4.42298 4.44103 4.44218 4.55632 4.68155 4.75662 4.79335 4.81200 4.87538 5.02876 5.13734 5.15838 5.23812 5.25497 5.36951 5.42863 5.51404 5.68072 5.73663 6.01025 6.14521 6.33396 6.50167 6.84991 6.96230 7.15845 7.75177 8.74323 Molecular weight = 343.13amu Principal moments of inertia in cm(-1) A = 0.012749 B = 0.002235 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.729161 B =12523.958182 C =13949.900125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.334 6.334 3 C 0.104 3.896 4 C -0.155 4.155 5 C -0.110 4.110 6 C 0.117 3.883 7 O -0.492 6.492 8 C -0.143 4.143 9 C 0.555 3.445 10 O -0.558 6.558 11 N -0.712 5.712 12 C 0.185 3.815 13 C -0.184 4.184 14 C -0.045 4.045 15 C -0.204 4.204 16 C 0.123 3.877 17 O -0.228 6.228 18 C -0.414 4.414 19 H 0.104 0.896 20 C -0.022 4.022 21 N -0.919 5.919 22 Si 1.018 2.982 23 H -0.264 1.264 24 H -0.272 1.272 25 H -0.252 1.252 26 C -0.243 4.243 27 C -0.045 4.045 28 C -0.113 4.113 29 H 0.114 0.886 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.169 0.831 33 H 0.165 0.835 34 H 0.405 0.595 35 H 0.408 0.592 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.146 0.854 39 H 0.115 0.885 40 H 0.273 0.727 41 H 0.122 0.878 42 H 0.140 0.860 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.849 17.537 -3.024 28.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.248 6.248 3 C 0.058 3.942 4 C -0.173 4.173 5 C -0.129 4.129 6 C 0.070 3.930 7 O -0.305 6.305 8 C -0.146 4.146 9 C 0.344 3.656 10 O -0.438 6.438 11 N -0.364 5.364 12 C 0.063 3.937 13 C -0.185 4.185 14 C -0.063 4.063 15 C -0.223 4.223 16 C 0.072 3.928 17 O -0.134 6.134 18 C -0.490 4.490 19 H 0.121 0.879 20 C -0.219 4.219 21 N -0.557 5.557 22 Si 0.837 3.163 23 H -0.189 1.189 24 H -0.197 1.197 25 H -0.175 1.175 26 C -0.262 4.262 27 C -0.063 4.063 28 C -0.133 4.133 29 H 0.132 0.868 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.186 0.814 33 H 0.182 0.818 34 H 0.264 0.736 35 H 0.245 0.755 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.164 0.836 39 H 0.133 0.867 40 H 0.082 0.918 41 H 0.139 0.861 42 H 0.158 0.842 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -22.223 17.712 -2.175 28.501 hybrid contribution 0.266 -1.130 -0.893 1.464 sum -21.958 16.582 -3.069 27.686 Atomic orbital electron populations 1.23414 0.76044 1.05735 1.02725 1.86131 1.23792 1.26242 1.88675 1.18948 0.91851 0.85461 0.97900 1.21648 1.01973 0.90673 1.03039 1.21476 0.92588 0.99342 0.99466 1.18602 0.90668 0.84225 0.99479 1.84755 1.80460 1.30531 1.34727 1.20148 0.92670 0.94018 1.07797 1.18265 0.86940 0.84019 0.76423 1.90776 1.73616 1.28451 1.50911 1.46150 1.07156 1.08918 1.74207 1.19929 0.78442 0.92594 1.02774 1.19488 1.08875 0.97166 0.93002 1.20883 0.94809 0.92114 0.98494 1.20441 1.09079 0.97365 0.95459 1.19987 0.91656 0.85791 0.95352 1.83955 1.71193 1.24648 1.33646 1.21842 1.47322 0.96225 0.83604 0.87870 1.26588 0.95781 0.95898 1.03674 1.70178 1.43896 1.11752 1.29855 0.84593 0.79560 0.77263 0.74866 1.18884 1.19659 1.17525 1.21245 1.09645 0.97906 0.97395 1.20944 0.94516 0.92527 0.98341 1.20555 0.92796 0.97009 1.02928 0.86810 0.91136 0.90976 0.81399 0.81798 0.73623 0.75534 0.90623 0.90784 0.83645 0.86661 0.91785 0.86061 0.84204 0.84144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.81 113.37 1.11 1.22 16 2 O -0.33 -5.58 10.49 -93.43 -0.98 -6.56 16 3 C 0.10 1.77 6.68 22.44 0.15 1.92 16 4 C -0.15 -1.89 9.02 22.39 0.20 -1.69 16 5 C -0.11 -1.51 9.97 22.33 0.22 -1.29 16 6 C 0.12 2.34 6.72 22.83 0.15 2.50 16 7 O -0.49 -10.46 11.57 -69.57 -0.80 -11.26 16 8 C -0.14 -3.20 5.88 -20.02 -0.12 -3.32 16 9 C 0.56 14.77 7.76 86.69 0.67 15.45 16 10 O -0.56 -18.06 15.15 16.99 0.26 -17.80 16 11 N -0.71 -17.12 5.50 -470.02 -2.58 -19.70 16 12 C 0.19 4.69 5.80 85.63 0.50 5.19 16 13 C -0.18 -5.45 5.25 -19.84 -0.10 -5.55 16 14 C -0.04 -1.42 9.69 22.25 0.22 -1.21 16 15 C -0.20 -8.33 9.99 22.39 0.22 -8.11 16 16 C 0.12 5.92 6.65 22.58 0.15 6.07 16 17 O -0.23 -13.43 9.76 -22.91 -0.22 -13.65 16 18 C -0.41 -23.57 9.49 67.92 0.64 -22.92 16 19 H 0.10 5.35 5.20 -2.91 -0.02 5.34 16 20 C -0.02 -1.20 5.49 84.83 0.47 -0.74 16 21 N -0.92 -55.67 13.67 21.61 0.30 -55.38 16 22 Si 1.02 42.01 29.55 68.60 2.03 44.04 16 23 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 24 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 25 H -0.25 -9.59 7.11 99.48 0.71 -8.88 16 26 C -0.24 -10.06 9.17 22.39 0.21 -9.85 16 27 C -0.04 -1.45 9.69 22.25 0.22 -1.24 16 28 C -0.11 -2.26 9.47 22.63 0.21 -2.04 16 29 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.07 0.33 7.65 -2.39 -0.02 0.31 16 31 H 0.07 0.31 7.66 -2.39 -0.02 0.29 16 32 H 0.17 0.91 6.27 -2.91 -0.02 0.89 16 33 H 0.16 1.34 8.06 -2.91 -0.02 1.32 16 34 H 0.40 5.55 9.06 -74.06 -0.67 4.88 16 35 H 0.41 8.86 6.49 -92.70 -0.60 8.26 16 36 H 0.08 1.89 8.08 -2.39 -0.02 1.87 16 37 H 0.07 1.88 8.08 -2.39 -0.02 1.86 16 38 H 0.15 3.74 8.06 -2.91 -0.02 3.72 16 39 H 0.12 4.69 8.06 -2.91 -0.02 4.66 16 40 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 41 H 0.12 5.13 5.64 -2.91 -0.02 5.11 16 42 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 43 H 0.14 2.64 6.40 -2.91 -0.02 2.63 16 Total: -1.00 -77.80 372.77 2.93 -74.87 By element: Atomic # 1 Polarization: 31.23 SS G_CDS: -0.18 Total: 31.05 kcal Atomic # 6 Polarization: -30.73 SS G_CDS: 5.12 Total: -25.61 kcal Atomic # 7 Polarization: -72.79 SS G_CDS: -2.29 Total: -75.08 kcal Atomic # 8 Polarization: -47.53 SS G_CDS: -1.75 Total: -49.28 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Total: -77.80 2.93 -74.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170804103.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.403 kcal (2) G-P(sol) polarization free energy of solvation -77.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds