Wall clock time and date at job start Wed Apr 1 2020 02:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42895 * 109.47467 * 2 1 4 4 C 1.35995 * 117.00064 * 180.02562 * 3 2 1 5 5 C 1.38558 * 120.07405 * 0.02562 * 4 3 2 6 6 C 1.38247 * 119.99917 * 179.97438 * 5 4 3 7 7 C 1.38245 * 120.14478 * 359.97438 * 6 5 4 8 8 S 1.76209 * 119.92519 * 180.02562 * 7 6 5 9 9 O 1.42096 * 106.40124 * 203.53760 * 8 7 6 10 10 O 1.42101 * 106.39682 * 336.45295 * 8 7 6 11 11 N 1.65591 * 107.21949 * 89.99766 * 8 7 6 12 12 C 1.46498 * 120.00455 * 64.99870 * 11 8 7 13 13 C 1.53001 * 109.47431 * 164.99901 * 12 11 8 14 14 C 1.50701 * 109.47116 * 180.02562 * 13 12 11 15 15 H 1.07992 * 120.00124 * 0.02562 * 14 13 12 16 16 C 1.37876 * 119.99687 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99777 * 179.97438 * 16 14 13 18 18 Si 1.86802 * 120.00123 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47002 * 89.99902 * 18 16 14 20 20 H 1.48504 * 109.46744 * 209.99575 * 18 16 14 21 21 H 1.48493 * 109.47124 * 329.99695 * 18 16 14 22 22 C 1.38238 * 120.15318 * 0.04167 * 7 6 5 23 23 C 1.38572 * 119.99411 * 359.95911 * 22 7 6 24 24 O 1.35994 * 120.07206 * 180.29924 * 23 22 7 25 25 C 1.42907 * 117.00165 * 359.72133 * 24 23 22 26 26 C 1.52990 * 109.47331 * 180.02562 * 25 24 23 27 27 H 1.08998 * 109.47213 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46886 * 300.00063 * 1 2 3 29 29 H 1.08997 * 109.47066 * 59.99867 * 1 2 3 30 30 H 1.08999 * 109.47035 * 239.99662 * 2 1 3 31 31 H 1.09005 * 109.46912 * 119.99850 * 2 1 3 32 32 H 1.07996 * 120.00036 * 359.97438 * 5 4 3 33 33 H 1.08002 * 119.92731 * 179.97438 * 6 5 4 34 34 H 0.97009 * 119.99922 * 245.00501 * 11 8 7 35 35 H 1.08997 * 109.47049 * 285.00396 * 12 11 8 36 36 H 1.09007 * 109.46822 * 45.00022 * 12 11 8 37 37 H 1.08999 * 109.46899 * 300.00301 * 13 12 11 38 38 H 1.09002 * 109.46649 * 59.99960 * 13 12 11 39 39 H 0.96996 * 119.99651 * 180.02562 * 17 16 14 40 40 H 1.07998 * 120.00548 * 179.97438 * 22 7 6 41 41 H 1.08998 * 109.46932 * 300.00387 * 25 24 23 42 42 H 1.09002 * 109.46940 * 59.99906 * 25 24 23 43 43 H 1.08998 * 109.47334 * 300.00026 * 26 25 24 44 44 H 1.09002 * 109.47280 * 59.99999 * 26 25 24 45 45 H 1.08999 * 109.47478 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3546 1.5253 -0.0005 5 6 4.2000 0.4275 -0.0016 6 6 5.5703 0.6104 -0.0027 7 6 6.1004 1.8872 -0.0033 8 16 7.8478 2.1136 -0.0053 9 8 8.0858 3.4045 0.5388 10 8 8.4069 0.9257 0.5386 11 7 8.3321 2.1766 -1.5876 12 6 7.8906 3.2789 -2.4455 13 6 8.7502 3.3165 -3.7106 14 6 8.2964 4.4509 -4.5928 15 1 7.4771 5.0821 -4.2821 16 6 8.9279 4.6834 -5.7962 17 7 8.5315 5.6730 -6.5664 18 14 10.3456 3.5920 -6.3333 19 1 9.8184 2.4448 -7.1152 20 1 11.2825 4.3770 -7.1767 21 1 11.0627 3.0867 -5.1352 22 6 5.2626 2.9868 -0.0019 23 6 3.8881 2.8105 -0.0008 24 8 3.0625 3.8911 -0.0055 25 6 3.6804 5.1797 -0.0054 26 6 2.6003 6.2632 -0.0105 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 3.7885 -0.5709 -0.0016 33 1 6.2282 -0.2461 -0.0031 34 1 8.9082 1.4834 -1.9465 35 1 6.8463 3.1297 -2.7201 36 1 7.9938 4.2215 -1.9079 37 1 9.7945 3.4657 -3.4360 38 1 8.6470 2.3739 -4.2481 39 1 8.9755 5.8364 -7.4131 40 1 5.6792 3.9832 -0.0019 41 1 4.2976 5.2866 0.8866 42 1 4.3040 5.2837 -0.8933 43 1 1.9827 6.1565 -0.9023 44 1 1.9769 6.1591 0.8776 45 1 3.0715 7.2461 -0.0108 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343976587.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:20:51 Heat of formation + Delta-G solvation = -133.954790 kcal Electronic energy + Delta-G solvation = -28169.459737 eV Core-core repulsion = 24086.745304 eV Total energy + Delta-G solvation = -4082.714433 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.133 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.83252 -38.89088 -37.25625 -37.07308 -35.69759 -35.55686 -32.71213 -32.53949 -31.72874 -30.64033 -29.71675 -29.32610 -24.96963 -24.58109 -23.38990 -23.06335 -21.50408 -20.93698 -19.60565 -18.92862 -17.98259 -17.24154 -16.90716 -16.72056 -16.62121 -16.35369 -15.99089 -15.49560 -15.08064 -14.35772 -14.25183 -14.23382 -14.08623 -13.86424 -13.39919 -13.35368 -12.90359 -12.80883 -12.72336 -12.66052 -12.30464 -12.20814 -12.13469 -11.97475 -11.86311 -11.62923 -11.54012 -11.39149 -11.34784 -11.18046 -10.87231 -10.81501 -10.48463 -10.08071 -9.90418 -9.36572 -9.15037 -9.04743 -8.62106 -8.20607 -6.12913 -4.12947 0.48752 0.76104 1.08253 2.77708 2.98921 3.08637 3.25574 3.34025 3.36363 3.40305 3.90537 4.31180 4.37632 4.49981 4.55075 4.60924 4.74910 4.84082 4.84932 4.86624 5.00718 5.10375 5.19022 5.21002 5.21080 5.34784 5.42357 5.49971 5.60040 5.62851 5.68292 5.69946 5.83986 5.89114 5.95104 6.03769 6.24252 6.32847 6.48621 6.79361 7.10311 7.20341 7.28386 7.31895 7.66993 8.40601 8.89759 9.47899 10.99954 Molecular weight = 343.13amu Principal moments of inertia in cm(-1) A = 0.009868 B = 0.003277 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2836.652309 B = 8542.786972 C = 9290.887872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.049 3.951 3 O -0.299 6.299 4 C 0.154 3.846 5 C -0.199 4.199 6 C -0.012 4.012 7 C -0.672 4.672 8 S 2.697 3.303 9 O -0.958 6.958 10 O -0.969 6.969 11 N -1.114 6.114 12 C 0.126 3.874 13 C -0.017 4.017 14 C -0.525 4.525 15 H 0.075 0.925 16 C 0.070 3.930 17 N -0.899 5.899 18 Si 0.880 3.120 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.264 1.264 22 C -0.074 4.074 23 C 0.085 3.915 24 O -0.304 6.304 25 C 0.044 3.956 26 C -0.149 4.149 27 H 0.079 0.921 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.143 0.857 33 H 0.145 0.855 34 H 0.416 0.584 35 H 0.058 0.942 36 H 0.074 0.926 37 H 0.026 0.974 38 H 0.019 0.981 39 H 0.265 0.735 40 H 0.153 0.847 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.067 0.933 44 H 0.064 0.936 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.654 -10.345 14.887 22.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 O -0.212 6.212 4 C 0.107 3.893 5 C -0.218 4.218 6 C -0.032 4.032 7 C -0.758 4.758 8 S 2.785 3.215 9 O -0.948 6.948 10 O -0.959 6.959 11 N -0.875 5.875 12 C 0.001 3.999 13 C -0.057 4.057 14 C -0.563 4.563 15 H 0.094 0.906 16 C -0.132 4.132 17 N -0.537 5.537 18 Si 0.707 3.293 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.189 1.189 22 C -0.094 4.094 23 C 0.039 3.961 24 O -0.218 6.218 25 C -0.031 4.031 26 C -0.206 4.206 27 H 0.097 0.903 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.160 0.840 33 H 0.162 0.838 34 H 0.250 0.750 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.045 0.955 38 H 0.038 0.962 39 H 0.074 0.926 40 H 0.171 0.829 41 H 0.083 0.917 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -13.620 -9.861 15.524 22.885 hybrid contribution 0.506 -1.038 -1.001 1.528 sum -13.114 -10.899 14.523 22.398 Atomic orbital electron populations 1.21766 0.92427 1.02884 1.03763 1.22900 0.96255 0.81787 1.01660 1.86214 1.17908 1.29388 1.87737 1.18466 0.83133 0.91358 0.96301 1.21153 0.93921 0.97723 1.09020 1.20608 0.94882 0.95495 0.92170 1.30765 1.26984 0.99042 1.19009 1.01722 0.73362 0.73563 0.72809 1.93575 1.83900 1.40602 1.76765 1.93556 1.76747 1.48611 1.77019 1.55528 1.64144 1.36972 1.30886 1.21466 0.98784 0.86864 0.92765 1.19759 0.95853 0.97972 0.92070 1.20939 1.18863 1.13610 1.02910 0.90646 1.24987 0.96917 0.95043 0.96277 1.69898 1.41739 1.29959 1.12089 0.86778 0.82741 0.80762 0.79007 1.20246 1.21277 1.18878 1.20851 0.91131 0.99464 0.97987 1.18183 0.88963 0.85678 1.03280 1.86159 1.33837 1.12850 1.88968 1.22960 0.97105 0.80803 1.02190 1.21743 0.98764 0.96711 1.03359 0.90258 0.91451 0.91308 0.91627 0.91775 0.83965 0.83754 0.74955 0.92365 0.90728 0.95547 0.96232 0.92554 0.82923 0.91673 0.91131 0.91403 0.91733 0.90051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 10.28 37.16 0.38 -0.56 16 2 C 0.05 0.39 5.46 37.16 0.20 0.59 16 3 O -0.30 -3.63 9.92 -34.23 -0.34 -3.97 16 4 C 0.15 2.02 6.70 -39.12 -0.26 1.76 16 5 C -0.20 -2.23 9.04 -39.46 -0.36 -2.59 16 6 C -0.01 -0.15 9.51 -39.58 -0.38 -0.52 16 7 C -0.67 -9.41 5.95 -39.58 -0.24 -9.65 16 8 S 2.70 41.05 5.74 -107.50 -0.62 40.43 16 9 O -0.96 -17.04 16.74 -57.17 -0.96 -18.00 16 10 O -0.97 -15.82 17.27 -57.17 -0.99 -16.81 16 11 N -1.11 -17.26 6.00 -10.61 -0.06 -17.32 16 12 C 0.13 2.33 6.16 -4.04 -0.02 2.31 16 13 C -0.02 -0.39 4.18 -27.88 -0.12 -0.51 16 14 C -0.52 -14.23 9.66 -34.44 -0.33 -14.57 16 15 H 0.08 2.17 7.99 -52.49 -0.42 1.75 16 16 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 17 N -0.90 -26.86 13.96 55.43 0.77 -26.08 16 18 Si 0.88 20.93 27.47 -169.99 -4.67 16.26 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.26 -6.00 6.54 56.52 0.37 -5.63 16 22 C -0.07 -1.06 8.51 -39.46 -0.34 -1.39 16 23 C 0.09 1.22 6.70 -39.12 -0.26 0.96 16 24 O -0.30 -4.24 9.92 -34.22 -0.34 -4.58 16 25 C 0.04 0.51 5.46 37.15 0.20 0.71 16 26 C -0.15 -1.37 10.28 37.15 0.38 -0.99 16 27 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.45 7.66 -51.93 -0.40 0.05 16 31 H 0.06 0.41 7.67 -51.93 -0.40 0.02 16 32 H 0.14 1.13 6.30 -52.49 -0.33 0.80 16 33 H 0.14 1.49 7.61 -52.49 -0.40 1.09 16 34 H 0.42 5.69 8.65 -34.47 -0.30 5.39 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.07 1.40 7.75 -51.93 -0.40 1.00 16 37 H 0.03 0.59 7.20 -51.93 -0.37 0.22 16 38 H 0.02 0.42 7.57 -51.93 -0.39 0.03 16 39 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.15 2.05 5.85 -52.49 -0.31 1.74 16 41 H 0.07 0.68 7.67 -51.93 -0.40 0.28 16 42 H 0.07 0.81 7.66 -51.93 -0.40 0.42 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 386.02 15.07 5.82 5.82 Total: -1.00 -34.73 386.02 -9.25 -43.98 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -6.64 Total: 2.85 kcal Atomic # 6 Polarization: -21.36 SS G_CDS: -1.23 Total: -22.59 kcal Atomic # 7 Polarization: -44.12 SS G_CDS: 0.71 Total: -43.41 kcal Atomic # 8 Polarization: -40.74 SS G_CDS: -2.62 Total: -43.36 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.67 Total: 16.26 kcal Atomic # 16 Polarization: 41.05 SS G_CDS: -0.62 Total: 40.43 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.73 -9.25 -43.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343976587.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.970 kcal (2) G-P(sol) polarization free energy of solvation -34.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds