Wall clock time and date at job start Wed Apr 1 2020 01:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47225 * 2 1 4 4 N 1.46505 * 109.46923 * 177.33449 * 3 2 1 5 5 C 1.36932 * 120.00040 * 289.42999 * 4 3 2 6 6 H 1.07998 * 119.99552 * 146.32503 * 5 4 3 7 7 C 1.38809 * 120.00317 * 326.32718 * 5 4 3 8 8 N 1.31621 * 119.99975 * 156.64427 * 7 5 4 9 9 Si 1.86794 * 119.99866 * 336.64710 * 7 5 4 10 10 H 1.48498 * 109.47261 * 95.34285 * 9 7 5 11 11 H 1.48502 * 109.47290 * 215.33844 * 9 7 5 12 12 H 1.48500 * 109.47353 * 335.34027 * 9 7 5 13 13 S 1.65600 * 119.99831 * 109.43962 * 4 3 2 14 14 O 1.42101 * 106.40200 * 336.45296 * 13 4 3 15 15 O 1.42099 * 106.40096 * 203.53661 * 13 4 3 16 16 C 1.76193 * 107.22378 * 89.99463 * 13 4 3 17 17 C 1.38165 * 120.02724 * 115.01681 * 16 13 4 18 18 C 1.38243 * 120.05440 * 179.97438 * 17 16 13 19 19 C 1.38295 * 120.11482 * 0.02562 * 18 17 16 20 20 C 1.38120 * 120.04994 * 0.02562 * 19 18 17 21 21 C 1.38707 * 120.02891 * 295.00504 * 16 13 4 22 22 O 1.35902 * 120.05447 * 359.97438 * 21 16 13 23 23 C 1.42901 * 116.99775 * 180.02562 * 22 21 16 24 24 C 1.53005 * 109.46824 * 180.02562 * 23 22 21 25 25 O 1.42897 * 109.46912 * 65.00631 * 24 23 22 26 26 C 1.42900 * 113.99938 * 179.97438 * 25 24 23 27 27 H 1.08997 * 109.47095 * 60.00250 * 1 2 3 28 28 H 1.09006 * 109.47191 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47318 * 300.00443 * 1 2 3 30 30 H 1.08998 * 109.47318 * 239.99556 * 2 1 3 31 31 H 1.09004 * 109.46841 * 119.99535 * 2 1 3 32 32 H 1.08994 * 109.47197 * 57.33469 * 3 2 1 33 33 H 1.09003 * 109.46539 * 297.32950 * 3 2 1 34 34 H 0.97002 * 120.00114 * 180.02562 * 8 7 5 35 35 H 1.07998 * 119.97551 * 0.02562 * 17 16 13 36 36 H 1.08001 * 119.94497 * 180.02562 * 18 17 16 37 37 H 1.07995 * 119.97118 * 180.27580 * 19 18 17 38 38 H 1.07998 * 120.02466 * 180.02562 * 20 19 18 39 39 H 1.08999 * 109.48017 * 300.00428 * 23 22 21 40 40 H 1.09007 * 109.47303 * 60.01119 * 23 22 21 41 41 H 1.09002 * 109.47290 * 185.00226 * 24 23 22 42 42 H 1.08999 * 109.47171 * 305.00201 * 24 23 22 43 43 H 1.09008 * 109.47381 * 59.99917 * 26 25 24 44 44 H 1.08993 * 109.47398 * 179.97438 * 26 25 24 45 45 H 1.09003 * 109.47296 * 300.00294 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5036 1.4429 0.0642 5 6 4.1384 1.0660 1.2175 6 1 5.0857 0.5496 1.1684 7 6 3.5645 1.3475 2.4496 8 7 3.8858 0.6294 3.5048 9 14 2.3360 2.7455 2.6101 10 1 0.9565 2.2078 2.4963 11 1 2.5036 3.4027 3.9312 12 1 2.5712 3.7376 1.5304 13 16 4.3902 1.8994 -1.2578 14 8 3.5575 1.6922 -2.3905 15 8 5.6682 1.2955 -1.1119 16 6 4.6455 3.6387 -1.1395 17 6 5.9219 4.1404 -0.9719 18 6 6.1229 5.5050 -0.8795 19 6 5.0475 6.3714 -0.9540 20 6 3.7695 5.8748 -1.1205 21 6 3.5653 4.5056 -1.2148 22 8 2.3089 4.0146 -1.3804 23 6 1.2447 4.9658 -1.4500 24 6 -0.0845 4.2311 -1.6357 25 8 -0.3584 3.4417 -0.4765 26 6 -1.5845 2.7112 -0.5471 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5138 0.8901 32 1 1.6382 1.9699 0.8651 33 1 1.7162 1.9422 -0.9130 34 1 3.4844 0.8259 4.3657 35 1 6.7634 3.4660 -0.9138 36 1 7.1214 5.8953 -0.7489 37 1 5.2077 7.4372 -0.8861 38 1 2.9301 6.5517 -1.1790 39 1 1.2136 5.5447 -0.5270 40 1 1.4107 5.6357 -2.2937 41 1 -0.8846 4.9577 -1.7778 42 1 -0.0226 3.5833 -2.5101 43 1 -1.5542 2.0318 -1.3990 44 1 -1.7191 2.1376 0.3699 45 1 -2.4154 3.4065 -0.6664 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358135928.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:42:49 Heat of formation + Delta-G solvation = -114.334339 kcal Electronic energy + Delta-G solvation = -31136.956571 eV Core-core repulsion = 27055.092945 eV Total energy + Delta-G solvation = -4081.863626 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.133 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -39.93952 -37.99536 -36.92982 -36.43027 -35.71093 -34.39969 -32.71846 -31.39995 -31.30500 -30.55486 -29.08786 -26.51606 -25.69980 -23.94447 -23.58306 -22.54858 -21.42390 -20.95942 -18.61136 -18.04940 -17.11295 -16.83928 -16.70432 -16.16507 -15.90285 -15.64721 -15.50240 -15.01073 -14.75010 -14.46818 -14.05298 -13.97290 -13.73148 -13.29352 -13.02527 -12.87487 -12.59860 -12.57312 -12.36981 -11.91055 -11.78294 -11.71609 -11.52376 -11.28875 -11.11406 -10.87776 -10.83508 -10.80209 -10.69779 -10.65826 -10.45444 -10.21004 -10.00189 -9.75050 -9.66518 -9.63424 -8.92098 -8.79981 -8.10414 -7.96143 -6.59460 -3.99337 1.31995 1.71762 1.80790 3.16076 3.23647 3.27431 3.36876 3.70491 3.87348 4.12751 4.34689 4.77435 4.81322 4.98800 5.01541 5.05737 5.08998 5.15387 5.21366 5.33055 5.37457 5.39490 5.49918 5.63518 5.69734 5.77511 5.77949 5.88143 5.98522 6.00837 6.11127 6.20739 6.44896 6.47427 6.52785 6.56533 6.63532 6.68846 6.90755 7.01019 7.03072 7.12672 7.33111 7.52498 7.54635 8.32591 8.96553 9.05667 10.46889 Molecular weight = 343.13amu Principal moments of inertia in cm(-1) A = 0.009303 B = 0.007755 C = 0.005950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3009.157248 B = 3609.610685 C = 4705.089486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.131 4.131 3 C 0.127 3.873 4 N -0.823 5.823 5 C -0.253 4.253 6 H 0.123 0.877 7 C 0.068 3.932 8 N -0.830 5.830 9 Si 0.885 3.115 10 H -0.266 1.266 11 H -0.296 1.296 12 H -0.258 1.258 13 S 2.554 3.446 14 O -0.991 6.991 15 O -0.980 6.980 16 C -0.687 4.687 17 C 0.007 3.993 18 C -0.184 4.184 19 C -0.051 4.051 20 C -0.236 4.236 21 C 0.217 3.783 22 O -0.294 6.294 23 C 0.057 3.943 24 C 0.061 3.939 25 O -0.376 6.376 26 C 0.028 3.972 27 H 0.051 0.949 28 H 0.049 0.951 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.049 0.951 33 H 0.090 0.910 34 H 0.279 0.721 35 H 0.142 0.858 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.125 0.875 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.047 0.953 44 H 0.089 0.911 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.857 9.775 -6.355 14.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.170 4.170 3 C 0.002 3.998 4 N -0.648 5.648 5 C -0.400 4.400 6 H 0.141 0.859 7 C -0.147 4.147 8 N -0.466 5.466 9 Si 0.714 3.286 10 H -0.193 1.193 11 H -0.224 1.224 12 H -0.182 1.182 13 S 2.653 3.347 14 O -0.981 6.981 15 O -0.970 6.970 16 C -0.765 4.765 17 C -0.012 4.012 18 C -0.203 4.203 19 C -0.069 4.069 20 C -0.256 4.256 21 C 0.170 3.830 22 O -0.206 6.206 23 C -0.018 4.018 24 C -0.016 4.016 25 O -0.295 6.295 26 C -0.068 4.068 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.066 0.934 33 H 0.108 0.892 34 H 0.089 0.911 35 H 0.160 0.840 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.143 0.857 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.065 0.935 44 H 0.107 0.893 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -8.473 9.164 -7.004 14.312 hybrid contribution -0.824 2.021 0.443 2.227 sum -9.297 11.184 -6.561 15.955 Atomic orbital electron populations 1.21844 0.96818 1.00767 1.01146 1.21761 0.94301 0.97809 1.03175 1.21408 0.79860 0.96618 1.01925 1.53964 1.12362 1.68269 1.30162 1.19348 1.09105 1.29593 0.81934 0.85938 1.25704 0.97515 0.96393 0.95048 1.69856 1.40746 1.35226 1.00822 0.86806 0.81164 0.83552 0.77119 1.19287 1.22380 1.18218 1.10219 0.73820 0.74299 0.76330 1.93363 1.67590 1.85386 1.51728 1.93360 1.41953 1.74868 1.86863 1.31521 0.96420 1.31204 1.17382 1.20841 0.95146 0.95550 0.89631 1.21133 0.98901 0.93758 1.06533 1.20992 0.92152 0.99280 0.94492 1.21195 0.98586 0.94015 1.11774 1.18307 0.83557 0.91594 0.89563 1.86236 1.12790 1.35286 1.86335 1.22886 0.85200 0.91547 1.02143 1.22572 0.94123 0.94949 0.89981 1.88043 1.40405 1.62308 1.38742 1.22898 0.85609 0.95389 1.02913 0.93020 0.93196 0.93082 0.92097 0.90383 0.93377 0.89160 0.91080 0.83988 0.85793 0.86013 0.85691 0.91091 0.90373 0.91299 0.91475 0.93465 0.89301 0.94515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.19 37.15 0.34 -2.01 16 2 C -0.13 -2.64 6.07 -26.74 -0.16 -2.80 16 3 C 0.13 2.84 3.90 -4.04 -0.02 2.82 16 4 N -0.82 -20.34 2.62 -59.91 -0.16 -20.49 16 5 C -0.25 -6.73 9.13 -15.06 -0.14 -6.87 16 6 H 0.12 3.51 7.54 -52.49 -0.40 3.12 16 7 C 0.07 1.79 5.33 -17.43 -0.09 1.70 16 8 N -0.83 -22.31 13.97 55.49 0.78 -21.53 16 9 Si 0.89 20.84 24.86 -169.99 -4.23 16.61 16 10 H -0.27 -5.97 6.80 56.52 0.38 -5.59 16 11 H -0.30 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.26 -6.13 7.11 56.52 0.40 -5.73 16 13 S 2.55 62.87 5.21 -107.50 -0.56 62.31 16 14 O -0.99 -25.09 16.00 -62.49 -1.00 -26.09 16 15 O -0.98 -26.10 15.86 -57.17 -0.91 -27.00 16 16 C -0.69 -15.09 5.92 -39.43 -0.23 -15.33 16 17 C 0.01 0.14 9.55 -39.61 -0.38 -0.23 16 18 C -0.18 -2.98 10.04 -39.56 -0.40 -3.38 16 19 C -0.05 -0.76 10.04 -39.60 -0.40 -1.16 16 20 C -0.24 -3.86 9.04 -39.43 -0.36 -4.21 16 21 C 0.22 4.32 6.63 -39.22 -0.26 4.06 16 22 O -0.29 -5.62 6.38 -37.33 -0.24 -5.86 16 23 C 0.06 0.79 5.12 37.16 0.19 0.98 16 24 C 0.06 0.73 6.32 37.16 0.23 0.97 16 25 O -0.38 -5.57 9.92 -40.08 -0.40 -5.96 16 26 C 0.03 0.32 9.66 101.05 0.98 1.29 16 27 H 0.05 0.74 6.12 -51.93 -0.32 0.42 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.80 7.42 -51.93 -0.39 0.42 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.08 1.69 7.85 -51.93 -0.41 1.28 16 32 H 0.05 1.09 2.54 -51.93 -0.13 0.96 16 33 H 0.09 1.96 4.73 -51.93 -0.25 1.71 16 34 H 0.28 6.94 8.31 -40.82 -0.34 6.60 16 35 H 0.14 2.70 7.33 -52.49 -0.38 2.32 16 36 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 37 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 38 H 0.13 1.61 6.30 -52.49 -0.33 1.28 16 39 H 0.07 0.94 7.66 -51.93 -0.40 0.54 16 40 H 0.08 0.84 7.66 -51.93 -0.40 0.44 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.05 0.49 7.08 -51.92 -0.37 0.12 16 44 H 0.09 0.99 7.19 -51.93 -0.37 0.62 16 45 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 366.32 15.07 5.52 5.52 Total: -1.00 -32.97 366.32 -8.13 -41.10 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -6.25 Total: 5.57 kcal Atomic # 6 Polarization: -23.49 SS G_CDS: -0.69 Total: -24.18 kcal Atomic # 7 Polarization: -42.64 SS G_CDS: 0.62 Total: -42.02 kcal Atomic # 8 Polarization: -62.37 SS G_CDS: -2.54 Total: -64.92 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.23 Total: 16.61 kcal Atomic # 16 Polarization: 62.87 SS G_CDS: -0.56 Total: 62.31 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.97 -8.13 -41.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358135928.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.235 kcal (2) G-P(sol) polarization free energy of solvation -32.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds