Wall clock time and date at job start Wed Apr 1 2020 02:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46896 * 111.00144 * 2 1 4 4 C 1.50706 * 109.46818 * 66.04570 * 3 2 1 5 5 H 1.08001 * 119.99743 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99922 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99995 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99894 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47072 * 89.99998 * 8 6 4 10 10 H 1.48496 * 109.47288 * 210.00109 * 8 6 4 11 11 H 1.48503 * 109.47043 * 330.00380 * 8 6 4 12 12 C 1.46903 * 110.99745 * 236.04896 * 2 1 3 13 13 C 1.52999 * 109.47586 * 293.95090 * 12 2 1 14 14 H 1.09003 * 109.46660 * 60.00182 * 13 12 2 15 15 O 1.42900 * 109.47034 * 300.00900 * 13 12 2 16 16 C 1.52991 * 109.47437 * 180.02562 * 13 12 2 17 17 O 1.42903 * 109.47089 * 185.00153 * 16 13 12 18 18 C 1.35904 * 116.99686 * 180.02562 * 17 16 13 19 19 C 1.38734 * 120.05067 * 180.02562 * 18 17 16 20 20 C 1.38145 * 119.94237 * 179.74240 * 19 18 17 21 21 C 1.38264 * 120.05437 * 0.25588 * 20 19 18 22 22 S 1.76202 * 119.94415 * 180.02562 * 21 20 19 23 23 C 1.81396 * 104.44866 * 90.00194 * 22 21 20 24 24 O 1.42103 * 104.27655 * 206.07453 * 22 21 20 25 25 O 1.42101 * 104.27667 * 333.92919 * 22 21 20 26 26 C 1.38268 * 120.11230 * 359.97438 * 21 20 19 27 27 C 1.38137 * 120.05792 * 359.97438 * 26 21 20 28 28 H 1.08999 * 109.47102 * 183.94963 * 1 2 3 29 29 H 1.08990 * 109.47253 * 303.95021 * 1 2 3 30 30 H 1.09005 * 109.46703 * 63.95450 * 1 2 3 31 31 H 1.08999 * 109.47652 * 186.04663 * 3 2 1 32 32 H 1.08998 * 109.47739 * 306.05024 * 3 2 1 33 33 H 0.97005 * 119.99782 * 180.02562 * 7 6 4 34 34 H 1.09003 * 109.46973 * 173.95463 * 12 2 1 35 35 H 1.08999 * 109.47294 * 53.96050 * 12 2 1 36 36 H 0.96702 * 113.99934 * 299.98774 * 15 13 12 37 37 H 1.09002 * 109.47283 * 64.99985 * 16 13 12 38 38 H 1.09000 * 109.47400 * 305.00146 * 16 13 12 39 39 H 1.08002 * 120.03267 * 0.02580 * 19 18 17 40 40 H 1.07999 * 119.97317 * 180.23157 * 20 19 18 41 41 H 1.09000 * 109.47249 * 60.00320 * 23 22 21 42 42 H 1.09007 * 109.47047 * 180.02562 * 23 22 21 43 43 H 1.09001 * 109.46991 * 299.99466 * 23 22 21 44 44 H 1.08007 * 119.96697 * 180.02562 * 26 21 20 45 45 H 1.08000 * 120.03391 * 180.02562 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0470 1.2985 5 1 1.0746 1.5111 2.0488 6 6 2.0277 3.3490 1.5290 7 7 2.7129 4.0015 0.6155 8 14 1.5838 4.1863 3.1388 9 1 2.6607 3.9491 4.1335 10 1 1.4321 5.6460 2.9122 11 1 0.3059 3.6292 3.6506 12 6 1.9954 -0.7659 -1.1377 13 6 1.6315 -2.2426 -0.9705 14 1 0.5472 -2.3475 -0.9325 15 8 2.2009 -2.7391 0.2424 16 6 2.1803 -3.0404 -2.1550 17 8 1.7421 -4.3972 -2.0595 18 6 2.1454 -5.2463 -3.0410 19 6 1.7563 -6.5776 -3.0110 20 6 2.1631 -7.4376 -4.0127 21 6 2.9617 -6.9737 -5.0417 22 16 3.4783 -8.0729 -6.3182 23 6 2.1772 -7.9493 -7.5760 24 8 4.6908 -7.5078 -6.7977 25 8 3.4595 -9.3549 -5.7055 26 6 3.3547 -5.6483 -5.0712 27 6 2.9498 -4.7842 -4.0725 28 1 -0.3633 -1.0252 0.0708 29 1 -0.3633 0.5739 0.8524 30 1 -0.3633 0.4513 -0.9234 31 1 3.0798 1.3444 -0.1082 32 1 1.5612 1.9274 -0.8308 33 1 2.9881 4.9174 0.7779 34 1 3.0797 -0.6611 -1.1757 35 1 1.5612 -0.3871 -2.0629 36 1 3.1652 -2.6772 0.2785 37 1 3.2698 -3.0085 -2.1411 38 1 1.8161 -2.6057 -3.0859 39 1 1.1322 -6.9404 -2.2078 40 1 1.8575 -8.4732 -3.9919 41 1 2.1089 -6.9200 -7.9283 42 1 2.4174 -8.6050 -8.4130 43 1 1.2231 -8.2490 -7.1424 44 1 3.9782 -5.2883 -5.8763 45 1 3.2566 -3.7489 -4.0962 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567171000.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:31:33 Heat of formation + Delta-G solvation = -150.343325 kcal Electronic energy + Delta-G solvation = -26845.002672 eV Core-core repulsion = 22761.577579 eV Total energy + Delta-G solvation = -4083.425093 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.133 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.37143 -39.54288 -38.36762 -38.10347 -36.95784 -36.88568 -34.63765 -32.46966 -31.92458 -31.07368 -30.17600 -29.21261 -27.91154 -25.99665 -24.16741 -23.79962 -22.66143 -21.87365 -20.00947 -19.44648 -18.64046 -18.35701 -17.84465 -17.65427 -17.09190 -16.89500 -16.79999 -16.22164 -16.19761 -15.93464 -15.73225 -15.22488 -15.06360 -14.68808 -14.54704 -14.33198 -14.08516 -13.91144 -13.88616 -13.72771 -13.63933 -13.26190 -13.10897 -13.01320 -12.87868 -12.65518 -12.56133 -12.43012 -12.26135 -12.20547 -12.01081 -11.99459 -11.65257 -11.63756 -11.42235 -10.91281 -10.62590 -10.18821 -9.64498 -9.00178 -8.22128 -6.31446 -0.80755 -0.13768 0.20835 1.40917 1.42028 1.53012 1.84779 1.99923 2.38159 2.39881 3.07583 3.10503 3.20674 3.22773 3.50393 3.63727 3.76711 3.81144 3.91668 4.02565 4.13827 4.15022 4.20438 4.26460 4.27690 4.43105 4.49095 4.53549 4.66597 4.70108 4.83594 4.90671 4.96096 5.00378 5.04249 5.06308 5.15559 5.16200 5.29454 5.57969 5.63653 6.03034 6.20248 6.28249 6.59638 6.83889 6.87220 7.38219 8.88585 Molecular weight = 343.13amu Principal moments of inertia in cm(-1) A = 0.033756 B = 0.001637 C = 0.001602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.288966 B =17104.685034 C =17474.213998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.541 5.541 3 C 0.208 3.792 4 C -0.524 4.524 5 H 0.060 0.940 6 C 0.002 3.998 7 N -0.933 5.933 8 Si 0.968 3.032 9 H -0.274 1.274 10 H -0.281 1.281 11 H -0.266 1.266 12 C 0.027 3.973 13 C 0.127 3.873 14 H 0.100 0.900 15 O -0.558 6.558 16 C 0.029 3.971 17 O -0.313 6.313 18 C 0.168 3.832 19 C -0.185 4.185 20 C 0.009 3.991 21 C -0.705 4.705 22 S 2.512 3.488 23 C -0.626 4.626 24 O -0.980 6.980 25 O -0.978 6.978 26 C 0.008 3.992 27 C -0.238 4.238 28 H 0.075 0.925 29 H 0.054 0.946 30 H 0.015 0.985 31 H 0.007 0.993 32 H -0.035 1.035 33 H 0.264 0.736 34 H 0.078 0.922 35 H 0.044 0.956 36 H 0.383 0.617 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.147 0.853 40 H 0.166 0.834 41 H 0.152 0.848 42 H 0.152 0.848 43 H 0.154 0.846 44 H 0.160 0.840 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.939 -24.539 -18.490 30.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.265 5.265 3 C 0.082 3.918 4 C -0.563 4.563 5 H 0.078 0.922 6 C -0.196 4.196 7 N -0.573 5.573 8 Si 0.793 3.207 9 H -0.200 1.200 10 H -0.207 1.207 11 H -0.190 1.190 12 C -0.102 4.102 13 C 0.067 3.933 14 H 0.118 0.882 15 O -0.364 6.364 16 C -0.047 4.047 17 O -0.225 6.225 18 C 0.121 3.879 19 C -0.204 4.204 20 C -0.010 4.010 21 C -0.792 4.792 22 S 2.696 3.304 23 C -0.780 4.780 24 O -0.977 6.977 25 O -0.975 6.975 26 C -0.011 4.011 27 C -0.257 4.257 28 H 0.093 0.907 29 H 0.073 0.927 30 H 0.034 0.966 31 H 0.026 0.974 32 H -0.017 1.017 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.062 0.938 36 H 0.231 0.769 37 H 0.104 0.896 38 H 0.111 0.889 39 H 0.165 0.835 40 H 0.183 0.817 41 H 0.170 0.830 42 H 0.170 0.830 43 H 0.172 0.828 44 H 0.177 0.823 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -2.685 -25.222 -17.738 30.951 hybrid contribution -0.179 2.163 0.034 2.171 sum -2.863 -23.059 -17.704 29.212 Atomic orbital electron populations 1.22246 0.87759 1.01076 0.99905 1.61877 1.08082 1.15086 1.41437 1.19402 0.93834 0.83612 0.94978 1.21471 1.34852 0.97472 1.02466 0.92162 1.25880 0.95070 0.98052 1.00608 1.70068 1.39322 1.11945 1.36012 0.85402 0.78903 0.77282 0.79141 1.19954 1.20697 1.19046 1.22692 1.01043 0.93648 0.92785 1.21770 0.99135 0.89445 0.82999 0.88201 1.86598 1.26473 1.84822 1.38493 1.23728 1.00969 0.79244 1.00728 1.86159 1.70160 1.20903 1.45282 1.19641 0.90828 0.90689 0.86745 1.20818 1.06170 0.90801 1.02659 1.21003 0.90008 1.00096 0.89878 1.30533 1.17421 1.11033 1.20181 1.04630 0.76693 0.73050 0.76039 1.30053 1.17584 1.14168 1.16211 1.93534 1.43457 1.79110 1.81621 1.93532 1.87760 1.40062 1.76188 1.21003 0.92258 0.90843 0.96946 1.21642 1.04344 1.02598 0.97154 0.90690 0.92662 0.96619 0.97440 1.01733 0.92674 0.90399 0.93765 0.76852 0.89619 0.88867 0.83486 0.81695 0.82989 0.82995 0.82808 0.82286 0.83064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.45 9.14 127.69 1.17 2.61 16 2 N -0.54 -22.40 4.62 -927.05 -4.28 -26.69 16 3 C 0.21 10.76 4.72 85.56 0.40 11.17 16 4 C -0.52 -29.51 8.46 25.60 0.22 -29.29 16 5 H 0.06 3.37 7.12 -2.91 -0.02 3.35 16 6 C 0.00 0.11 5.46 84.65 0.46 0.57 16 7 N -0.93 -55.30 13.29 21.45 0.28 -55.02 16 8 Si 0.97 44.11 29.54 68.60 2.03 46.14 16 9 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 11 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 12 C 0.03 0.84 4.62 86.30 0.40 1.24 16 13 C 0.13 3.23 3.12 30.59 0.10 3.33 16 14 H 0.10 2.67 6.55 -2.39 -0.02 2.65 16 15 O -0.56 -16.38 13.17 -144.32 -1.90 -18.28 16 16 C 0.03 0.55 4.37 71.98 0.31 0.87 16 17 O -0.31 -7.00 10.10 -87.81 -0.89 -7.89 16 18 C 0.17 3.33 6.69 22.51 0.15 3.48 16 19 C -0.19 -3.28 9.99 22.37 0.22 -3.06 16 20 C 0.01 0.13 9.46 22.25 0.21 0.34 16 21 C -0.71 -10.11 5.66 22.28 0.13 -9.99 16 22 S 2.51 29.39 5.80 -56.49 -0.33 29.06 16 23 C -0.63 -0.73 10.79 113.37 1.22 0.50 16 24 O -0.98 -18.67 17.12 -127.65 -2.19 -20.86 16 25 O -0.98 -18.23 17.12 -127.65 -2.19 -20.41 16 26 C 0.01 0.12 9.46 22.25 0.21 0.33 16 27 C -0.24 -4.00 9.04 22.36 0.20 -3.79 16 28 H 0.07 2.40 6.47 -2.39 -0.02 2.38 16 29 H 0.05 2.30 6.76 -2.39 -0.02 2.29 16 30 H 0.02 0.56 8.14 -2.38 -0.02 0.54 16 31 H 0.01 0.41 7.93 -2.39 -0.02 0.40 16 32 H -0.03 -1.95 8.12 -2.39 -0.02 -1.97 16 33 H 0.26 14.74 8.31 -92.70 -0.77 13.97 16 34 H 0.08 2.33 7.93 -2.39 -0.02 2.31 16 35 H 0.04 1.28 8.12 -2.39 -0.02 1.26 16 36 H 0.38 8.95 9.05 -74.06 -0.67 8.28 16 37 H 0.09 1.40 7.65 -2.39 -0.02 1.38 16 38 H 0.09 1.43 7.67 -2.39 -0.02 1.42 16 39 H 0.15 2.30 8.06 -2.91 -0.02 2.27 16 40 H 0.17 1.71 7.57 -2.91 -0.02 1.69 16 41 H 0.15 -0.28 8.14 -2.39 -0.02 -0.30 16 42 H 0.15 -0.30 8.14 -2.39 -0.02 -0.31 16 43 H 0.15 -0.34 8.14 -2.39 -0.02 -0.36 16 44 H 0.16 1.78 7.57 -2.91 -0.02 1.75 16 45 H 0.15 2.01 6.30 -2.91 -0.02 1.99 16 Total: -1.00 -81.17 386.81 -3.72 -84.89 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: 0.34 Total: 10.75 kcal Atomic # 6 Polarization: -27.10 SS G_CDS: 5.41 Total: -21.70 kcal Atomic # 7 Polarization: -77.70 SS G_CDS: -4.00 Total: -81.70 kcal Atomic # 8 Polarization: -60.28 SS G_CDS: -7.16 Total: -67.44 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Atomic # 16 Polarization: 29.39 SS G_CDS: -0.33 Total: 29.06 kcal Total: -81.17 -3.72 -84.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567171000.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.452 kcal (2) G-P(sol) polarization free energy of solvation -81.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds