Wall clock time and date at job start Wed Apr 1 2020 01:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35901 * 116.99516 * 2 1 4 4 C 1.38772 * 120.02835 * 0.02562 * 3 2 1 5 5 C 1.38182 * 120.05496 * 179.97438 * 4 3 2 6 6 C 1.38171 * 120.10615 * 0.02562 * 5 4 3 7 7 C 1.38769 * 120.06065 * 359.97438 * 6 5 4 8 8 O 1.35898 * 120.03000 * 180.02562 * 7 6 5 9 9 C 1.42897 * 117.00036 * 359.97438 * 8 7 6 10 10 C 1.38635 * 119.94260 * 0.02562 * 7 6 5 11 11 S 1.76202 * 120.05644 * 179.72573 * 10 7 6 12 12 O 1.42094 * 106.40586 * 203.54171 * 11 10 7 13 13 O 1.42109 * 106.39934 * 336.46095 * 11 10 7 14 14 N 1.65603 * 107.21944 * 89.99685 * 11 10 7 15 15 C 1.46500 * 119.99974 * 90.00383 * 14 11 10 16 16 C 1.50694 * 109.47111 * 95.00119 * 15 14 11 17 17 H 1.08001 * 120.00107 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99528 * 180.02562 * 16 15 14 19 19 N 1.31522 * 119.99919 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 120.00447 * 359.97438 * 18 16 15 21 21 H 1.48496 * 109.47183 * 90.00072 * 20 18 16 22 22 H 1.48498 * 109.47041 * 210.00458 * 20 18 16 23 23 H 1.48502 * 109.46944 * 330.00061 * 20 18 16 24 24 C 1.46509 * 120.00083 * 270.00307 * 14 11 10 25 25 C 1.53001 * 109.46744 * 119.99908 * 24 14 11 26 26 C 1.52995 * 109.46885 * 240.00131 * 24 14 11 27 27 H 1.08991 * 109.47444 * 300.00059 * 1 2 3 28 28 H 1.08996 * 109.47058 * 60.00900 * 1 2 3 29 29 H 1.09009 * 109.46629 * 180.02562 * 1 2 3 30 30 H 1.07991 * 119.97311 * 359.97438 * 4 3 2 31 31 H 1.07999 * 119.94477 * 180.02562 * 5 4 3 32 32 H 1.08002 * 119.97247 * 179.97438 * 6 5 4 33 33 H 1.09003 * 109.46716 * 180.02562 * 9 8 7 34 34 H 1.08996 * 109.47025 * 300.00092 * 9 8 7 35 35 H 1.08997 * 109.47228 * 60.00215 * 9 8 7 36 36 H 1.09003 * 109.46924 * 215.00282 * 15 14 11 37 37 H 1.08996 * 109.46792 * 334.99513 * 15 14 11 38 38 H 0.96993 * 120.00322 * 180.02562 * 19 18 16 39 39 H 1.08998 * 109.46820 * 0.02562 * 24 14 11 40 40 H 1.08998 * 109.47185 * 60.00563 * 25 24 14 41 41 H 1.08996 * 109.46360 * 180.02562 * 25 24 14 42 42 H 1.08994 * 109.47348 * 299.99893 * 25 24 14 43 43 H 1.08996 * 109.47412 * 59.99527 * 26 24 14 44 44 H 1.09001 * 109.47117 * 180.02562 * 26 24 14 45 45 H 1.09001 * 109.46973 * 299.99722 * 26 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2905 2.3751 0.0005 5 6 1.9172 3.6066 0.0011 6 6 3.2968 3.6823 0.0005 7 6 4.0566 2.5211 0.0000 8 8 5.4135 2.5962 0.0000 9 6 5.9909 3.9033 0.0000 10 6 3.4303 1.2843 -0.0005 11 16 4.3921 -0.1920 -0.0085 12 8 3.5618 -1.2090 -0.5521 13 8 5.6560 0.1555 -0.5575 14 7 4.6666 -0.6069 1.5710 15 6 3.7250 -1.4830 2.2725 16 6 4.2081 -2.9081 2.1901 17 1 5.1245 -3.1382 1.6671 18 6 3.4794 -3.9182 2.7815 19 7 3.9006 -5.1620 2.7092 20 14 1.8939 -3.5202 3.6854 21 1 0.7528 -3.5899 2.7376 22 1 1.6886 -4.5020 4.7804 23 1 1.9799 -2.1523 4.2569 24 6 5.8510 -0.0977 2.2670 25 6 5.4148 0.7250 3.4810 26 6 6.7145 -1.2726 2.7305 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 0.2121 2.3185 0.0005 31 1 1.3276 4.5115 0.0019 32 1 3.7844 4.6460 0.0005 33 1 7.0778 3.8203 -0.0005 34 1 5.6677 4.4432 -0.8899 35 1 5.6678 4.4433 0.8900 36 1 3.6583 -1.1818 3.3180 37 1 2.7418 -1.4051 1.8086 38 1 3.3879 -5.8727 3.1248 39 1 6.4275 0.5323 1.5896 40 1 4.8381 0.0952 4.1584 41 1 6.2960 1.1041 3.9984 42 1 4.7997 1.5619 3.1507 43 1 7.0251 -1.8587 1.8656 44 1 7.5955 -0.8939 3.2487 45 1 6.1377 -1.9023 3.4080 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577927565.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:41:32 Heat of formation + Delta-G solvation = -104.681454 kcal Electronic energy + Delta-G solvation = -30774.781129 eV Core-core repulsion = 26693.336083 eV Total energy + Delta-G solvation = -4081.445046 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.133 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.54928 -39.20246 -36.82630 -36.47371 -36.21055 -34.86649 -32.55195 -31.41800 -30.69486 -29.66474 -27.92025 -27.29651 -26.80164 -26.50051 -23.32404 -22.27804 -21.89313 -20.19811 -19.15549 -17.91593 -17.14530 -16.95745 -16.83095 -16.43322 -16.35029 -15.92591 -15.56356 -15.03604 -14.96709 -14.68564 -14.10031 -13.69649 -13.48747 -13.26717 -13.00993 -12.88525 -12.77225 -12.54564 -12.21494 -11.93936 -11.76499 -11.68304 -11.60317 -11.55949 -11.48172 -11.09361 -11.01221 -10.95397 -10.83920 -10.76246 -10.72563 -10.31825 -10.16704 -10.06328 -9.86209 -9.29625 -9.01404 -8.45947 -8.24353 -7.91761 -5.95745 -3.91481 0.83738 1.29616 1.32117 2.80364 3.33021 3.36400 3.39272 3.40082 3.51805 3.91110 4.48642 4.53186 4.59699 4.65419 4.81736 4.93727 5.00833 5.03833 5.16375 5.17658 5.32151 5.37132 5.44710 5.47467 5.49122 5.58670 5.74765 5.78927 5.93333 6.00794 6.10570 6.18460 6.26338 6.30922 6.37298 6.52033 6.64581 6.85450 6.99121 7.11473 7.22189 7.23837 7.40320 7.65228 7.74372 8.63934 9.11719 9.64558 11.17814 Molecular weight = 343.13amu Principal moments of inertia in cm(-1) A = 0.012126 B = 0.005964 C = 0.004732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2308.551600 B = 4693.983981 C = 5915.423777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.278 6.278 3 C 0.260 3.740 4 C -0.272 4.272 5 C 0.004 3.996 6 C -0.274 4.274 7 C 0.256 3.744 8 O -0.286 6.286 9 C 0.024 3.976 10 C -0.747 4.747 11 S 2.693 3.307 12 O -0.929 6.929 13 O -0.961 6.961 14 N -0.970 5.970 15 C 0.224 3.776 16 C -0.516 4.516 17 H 0.082 0.918 18 C 0.072 3.928 19 N -0.898 5.898 20 Si 0.866 3.134 21 H -0.274 1.274 22 H -0.287 1.287 23 H -0.266 1.266 24 C 0.149 3.851 25 C -0.159 4.159 26 C -0.152 4.152 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.110 0.890 30 H 0.135 0.865 31 H 0.131 0.869 32 H 0.134 0.866 33 H 0.107 0.893 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.032 0.968 37 H 0.034 0.966 38 H 0.262 0.738 39 H 0.088 0.912 40 H 0.064 0.936 41 H 0.057 0.943 42 H 0.046 0.954 43 H 0.057 0.943 44 H 0.044 0.956 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.306 21.206 -2.448 21.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.188 6.188 3 C 0.210 3.790 4 C -0.291 4.291 5 C -0.014 4.014 6 C -0.293 4.293 7 C 0.207 3.793 8 O -0.197 6.197 9 C -0.071 4.071 10 C -0.831 4.831 11 S 2.779 3.221 12 O -0.919 6.919 13 O -0.951 6.951 14 N -0.809 5.809 15 C 0.101 3.899 16 C -0.555 4.555 17 H 0.100 0.900 18 C -0.129 4.129 19 N -0.537 5.537 20 Si 0.693 3.307 21 H -0.200 1.200 22 H -0.213 1.213 23 H -0.191 1.191 24 C 0.043 3.957 25 C -0.218 4.218 26 C -0.211 4.211 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.128 0.872 30 H 0.153 0.847 31 H 0.148 0.852 32 H 0.152 0.848 33 H 0.125 0.875 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.049 0.951 37 H 0.052 0.948 38 H 0.072 0.928 39 H 0.106 0.894 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.065 0.935 43 H 0.076 0.924 44 H 0.063 0.937 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.875 20.251 -3.128 20.692 hybrid contribution -1.725 1.182 0.849 2.257 sum -4.600 21.433 -2.280 22.040 Atomic orbital electron populations 1.23243 0.77674 1.05082 1.01212 1.86479 1.21927 1.24722 1.85706 1.18126 0.89894 0.85339 0.85627 1.21196 1.00327 0.92179 1.15445 1.20863 0.93775 0.97087 0.89691 1.21141 0.94974 0.97359 1.15861 1.18035 0.82862 0.91969 0.86392 1.86374 1.15980 1.30989 1.86315 1.23198 0.99834 0.82667 1.01393 1.29852 1.04526 1.19123 1.29571 1.02161 0.73514 0.72972 0.73460 1.93616 1.69084 1.53201 1.76038 1.93521 1.40210 1.84809 1.76574 1.57362 1.32444 1.59830 1.31294 1.19442 0.87792 0.89904 0.92776 1.21435 1.10359 0.89136 1.34612 0.89987 1.24825 0.97116 0.94888 0.96111 1.69895 1.39230 0.99469 1.45155 0.87010 0.85227 0.78480 0.79978 1.19957 1.21278 1.19086 1.20697 0.85898 0.95277 0.93867 1.22154 1.01127 0.99651 0.98897 1.22120 0.98232 0.98219 1.02481 0.92319 0.92268 0.87215 0.84712 0.85155 0.84830 0.87475 0.92338 0.92330 0.95062 0.94814 0.92787 0.89412 0.91660 0.92373 0.93499 0.92432 0.93659 0.89797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 101.05 0.99 1.27 16 2 O -0.28 -5.03 8.00 -41.16 -0.33 -5.36 16 3 C 0.26 4.38 6.63 -39.24 -0.26 4.12 16 4 C -0.27 -3.47 9.04 -39.40 -0.36 -3.83 16 5 C 0.00 0.05 10.04 -39.63 -0.40 -0.35 16 6 C -0.27 -3.27 9.04 -39.41 -0.36 -3.63 16 7 C 0.26 3.98 6.63 -39.24 -0.26 3.72 16 8 O -0.29 -4.30 8.34 -41.12 -0.34 -4.64 16 9 C 0.02 0.22 9.81 101.05 0.99 1.21 16 10 C -0.75 -13.69 6.00 -39.29 -0.24 -13.92 16 11 S 2.69 59.40 5.48 -107.50 -0.59 58.82 16 12 O -0.93 -23.59 14.99 -66.14 -0.99 -24.59 16 13 O -0.96 -21.74 14.59 -66.12 -0.97 -22.70 16 14 N -0.97 -21.14 2.73 -108.57 -0.30 -21.44 16 15 C 0.22 5.44 3.74 -5.20 -0.02 5.42 16 16 C -0.52 -14.66 8.08 -34.44 -0.28 -14.94 16 17 H 0.08 2.54 7.32 -52.49 -0.38 2.15 16 18 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 19 N -0.90 -27.68 13.96 55.43 0.77 -26.91 16 20 Si 0.87 21.27 27.47 -169.99 -4.67 16.61 16 21 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 24 C 0.15 2.79 3.24 -67.93 -0.22 2.57 16 25 C -0.16 -2.50 9.16 37.16 0.34 -2.16 16 26 C -0.15 -2.92 8.21 37.15 0.30 -2.61 16 27 H 0.06 0.60 7.66 -51.93 -0.40 0.20 16 28 H 0.06 0.57 7.66 -51.93 -0.40 0.18 16 29 H 0.11 1.29 8.14 -51.92 -0.42 0.87 16 30 H 0.14 1.32 6.29 -52.49 -0.33 0.99 16 31 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 32 H 0.13 1.15 6.29 -52.49 -0.33 0.82 16 33 H 0.11 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16 35 H 0.06 0.42 7.66 -51.93 -0.40 0.03 16 36 H 0.03 0.73 5.51 -51.93 -0.29 0.44 16 37 H 0.03 0.84 6.70 -51.93 -0.35 0.49 16 38 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 39 H 0.09 1.57 6.91 -51.93 -0.36 1.21 16 40 H 0.06 1.09 6.69 -51.93 -0.35 0.74 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.06 1.20 7.93 -51.93 -0.41 0.78 16 44 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.08 1.80 6.65 -51.93 -0.35 1.45 16 LS Contribution 369.20 15.07 5.56 5.56 Total: -1.00 -36.77 369.20 -8.14 -44.91 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -6.44 Total: 0.86 kcal Atomic # 6 Polarization: -21.26 SS G_CDS: 0.15 Total: -21.11 kcal Atomic # 7 Polarization: -48.82 SS G_CDS: 0.48 Total: -48.35 kcal Atomic # 8 Polarization: -54.66 SS G_CDS: -2.63 Total: -57.29 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.67 Total: 16.61 kcal Atomic # 16 Polarization: 59.40 SS G_CDS: -0.59 Total: 58.82 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.77 -8.14 -44.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577927565.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.775 kcal (2) G-P(sol) polarization free energy of solvation -36.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds