Wall clock time and date at job start Wed Apr 1 2020 01:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35981 * 117.00374 * 2 1 4 4 C 1.38726 * 119.99874 * 0.02562 * 3 2 1 5 5 C 1.38106 * 120.00327 * 180.02562 * 4 3 2 6 6 C 1.38728 * 119.99835 * 359.97438 * 5 4 3 7 7 O 1.35975 * 120.00045 * 180.02562 * 6 5 4 8 8 C 1.42898 * 117.00093 * 0.02562 * 7 6 5 9 9 C 1.38681 * 119.99538 * 0.02562 * 6 5 4 10 10 S 1.76204 * 119.99342 * 179.97438 * 9 6 5 11 11 O 1.42105 * 106.39972 * 181.45719 * 10 9 6 12 12 O 1.42098 * 106.40426 * 48.53891 * 10 9 6 13 13 N 1.65595 * 107.21987 * 294.99603 * 10 9 6 14 14 C 1.46498 * 120.00275 * 270.00253 * 13 10 9 15 15 C 1.50703 * 109.46907 * 94.99986 * 14 13 10 16 16 H 1.08001 * 120.00049 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99988 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99970 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00266 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46821 * 0.02562 * 19 17 15 21 21 H 1.48491 * 109.47101 * 119.99857 * 19 17 15 22 22 H 1.48500 * 109.47126 * 240.00184 * 19 17 15 23 23 C 1.46498 * 119.99850 * 89.99964 * 13 10 9 24 24 C 1.53007 * 109.47108 * 120.00198 * 23 13 10 25 25 C 1.52998 * 109.47559 * 240.00191 * 23 13 10 26 26 C 1.38146 * 120.00351 * 0.22758 * 9 6 5 27 27 H 1.09000 * 109.46877 * 300.00122 * 1 2 3 28 28 H 1.08995 * 109.47121 * 59.99813 * 1 2 3 29 29 H 1.08998 * 109.47460 * 179.97438 * 1 2 3 30 30 H 1.08000 * 119.99562 * 359.97438 * 4 3 2 31 31 H 1.07991 * 120.00532 * 179.97438 * 5 4 3 32 32 H 1.09004 * 109.47473 * 300.00600 * 8 7 6 33 33 H 1.08997 * 109.47016 * 60.00394 * 8 7 6 34 34 H 1.09003 * 109.47553 * 180.02562 * 8 7 6 35 35 H 1.09001 * 109.47378 * 214.99601 * 14 13 10 36 36 H 1.09002 * 109.46925 * 335.00342 * 14 13 10 37 37 H 0.97003 * 120.00349 * 180.02562 * 18 17 15 38 38 H 1.09001 * 109.47170 * 0.02562 * 23 13 10 39 39 H 1.09001 * 109.46859 * 60.00110 * 24 23 13 40 40 H 1.09000 * 109.47156 * 180.02562 * 24 23 13 41 41 H 1.08998 * 109.47018 * 300.00407 * 24 23 13 42 42 H 1.09003 * 109.46923 * 60.00153 * 25 23 13 43 43 H 1.08999 * 109.47669 * 179.97438 * 25 23 13 44 44 H 1.09001 * 109.47130 * 300.00332 * 25 23 13 45 45 H 1.07996 * 120.00165 * 179.72447 * 26 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2909 2.3750 0.0005 5 6 1.9179 3.6056 0.0000 6 6 3.3033 3.6782 -0.0005 7 8 3.9206 4.8897 -0.0005 8 6 3.0807 6.0458 0.0006 9 6 4.0585 2.5150 -0.0011 10 16 5.8181 2.6073 -0.0024 11 8 6.2901 1.2674 -0.0374 12 8 6.1724 3.5296 1.0188 13 7 6.2716 3.3003 -1.4364 14 6 6.5319 2.4586 -2.6068 15 6 5.2879 2.3771 -3.4535 16 1 4.3928 2.8996 -3.1499 17 6 5.2921 1.6345 -4.6153 18 7 6.3817 0.9970 -4.9843 19 14 3.7500 1.5327 -5.6645 20 1 2.6691 2.3330 -5.0346 21 1 4.0368 2.0688 -7.0193 22 1 3.3182 0.1161 -5.7738 23 6 6.4123 4.7552 -1.5345 24 6 7.8495 5.1032 -1.9278 25 6 5.4493 5.2904 -2.5962 26 6 3.4313 1.2842 -0.0058 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 0.2124 2.3185 0.0005 31 1 1.3298 4.5113 0.0000 32 1 2.4506 6.0381 -0.8888 33 1 2.4523 6.0374 0.8911 34 1 3.6985 6.9438 0.0000 35 1 7.3424 2.8918 -3.1929 36 1 6.8147 1.4582 -2.2792 37 1 6.3848 0.4749 -5.8018 38 1 6.1798 5.2086 -0.5710 39 1 8.0824 4.6498 -2.8913 40 1 7.9543 6.1857 -2.0004 41 1 8.5355 4.7219 -1.1715 42 1 4.4255 5.0426 -2.3160 43 1 5.5537 6.3730 -2.6689 44 1 5.6823 4.8370 -3.5597 45 1 4.0194 0.3784 -0.0107 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609158366.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:41:39 Heat of formation + Delta-G solvation = -114.456916 kcal Electronic energy + Delta-G solvation = -30630.910964 eV Core-core repulsion = 26549.042022 eV Total energy + Delta-G solvation = -4081.868942 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.133 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.37752 -38.99165 -36.80760 -36.48349 -36.16417 -35.10331 -32.73153 -31.35886 -30.52893 -29.71906 -27.47352 -26.93359 -26.83655 -26.42046 -23.09063 -22.64136 -22.01847 -20.23099 -19.00444 -17.86809 -17.49430 -17.12159 -16.61791 -16.44966 -15.83802 -15.68911 -15.54912 -15.11811 -14.78052 -14.41322 -14.24417 -13.72877 -13.52691 -13.30270 -13.02591 -12.84138 -12.72190 -12.41967 -12.26251 -12.00207 -11.75616 -11.65251 -11.62288 -11.38784 -11.35402 -11.19886 -11.10491 -10.98643 -10.87910 -10.67933 -10.46957 -10.41142 -10.24602 -10.21723 -9.77940 -9.48426 -9.24635 -8.41091 -7.94683 -7.71508 -6.03388 -4.06763 0.91696 1.26553 1.52526 3.20225 3.27066 3.35406 3.37272 3.37926 3.52278 3.83135 4.42765 4.44810 4.65642 4.78117 4.93054 5.01708 5.07681 5.11188 5.15327 5.30629 5.37146 5.38161 5.47617 5.49858 5.55569 5.80859 5.83557 5.88689 6.00565 6.10329 6.18958 6.26033 6.29535 6.41954 6.48977 6.60041 6.68582 6.91333 7.19858 7.23553 7.47501 7.48568 7.56303 7.79575 7.95112 8.25252 8.97215 9.57326 11.04850 Molecular weight = 343.13amu Principal moments of inertia in cm(-1) A = 0.008397 B = 0.006993 C = 0.005124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3333.869767 B = 4003.327710 C = 5463.486973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.314 6.314 3 C 0.068 3.932 4 C -0.123 4.123 5 C -0.193 4.193 6 C 0.192 3.808 7 O -0.303 6.303 8 C 0.028 3.972 9 C -0.652 4.652 10 S 2.696 3.304 11 O -0.960 6.960 12 O -0.968 6.968 13 N -0.970 5.970 14 C 0.242 3.758 15 C -0.528 4.528 16 H 0.063 0.937 17 C 0.064 3.936 18 N -0.890 5.890 19 Si 0.887 3.113 20 H -0.275 1.275 21 H -0.284 1.284 22 H -0.284 1.284 23 C 0.153 3.847 24 C -0.157 4.157 25 C -0.153 4.153 26 C -0.004 4.004 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.099 0.901 30 H 0.132 0.868 31 H 0.135 0.865 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.104 0.896 35 H 0.045 0.955 36 H 0.052 0.948 37 H 0.262 0.738 38 H 0.089 0.911 39 H 0.067 0.933 40 H 0.055 0.945 41 H 0.051 0.949 42 H 0.051 0.949 43 H 0.041 0.959 44 H 0.080 0.920 45 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.310 7.740 9.178 15.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.228 6.228 3 C 0.023 3.977 4 C -0.142 4.142 5 C -0.212 4.212 6 C 0.144 3.856 7 O -0.215 6.215 8 C -0.067 4.067 9 C -0.736 4.736 10 S 2.783 3.217 11 O -0.950 6.950 12 O -0.958 6.958 13 N -0.810 5.810 14 C 0.120 3.880 15 C -0.568 4.568 16 H 0.081 0.919 17 C -0.138 4.138 18 N -0.529 5.529 19 Si 0.715 3.285 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.210 1.210 23 C 0.047 3.953 24 C -0.216 4.216 25 C -0.211 4.211 26 C -0.024 4.024 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.117 0.883 30 H 0.150 0.850 31 H 0.152 0.848 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.123 0.877 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.107 0.893 39 H 0.086 0.914 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.060 0.940 44 H 0.099 0.901 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -9.427 7.197 9.695 15.318 hybrid contribution -2.410 0.192 -1.208 2.703 sum -11.837 7.388 8.488 16.332 Atomic orbital electron populations 1.23019 0.78956 1.03858 1.00934 1.86117 1.20817 1.26311 1.89545 1.18855 0.92283 0.84330 1.02227 1.21175 0.99845 0.91877 1.01276 1.20988 0.93150 0.98417 1.08694 1.18127 0.90757 0.84431 0.92248 1.86192 1.35516 1.12100 1.87703 1.23096 0.95963 0.86462 1.01208 1.30423 1.28823 0.95284 1.19065 1.01831 0.73308 0.73235 0.73278 1.93542 1.78463 1.36266 1.86747 1.93517 1.81932 1.64398 1.55986 1.57393 1.80896 1.13976 1.28745 1.19245 0.97199 0.89882 0.81669 1.21626 0.98173 1.30100 1.06877 0.91881 1.24901 0.95902 0.95359 0.97642 1.69935 1.27073 1.31818 1.24067 0.86622 0.83690 0.77884 0.80322 1.19934 1.21065 1.20969 1.20659 0.95109 0.79801 0.99740 1.22120 0.96527 1.00408 1.02582 1.22174 0.99274 0.98354 1.01321 1.20020 0.91770 0.96865 0.93703 0.93007 0.92839 0.88278 0.85000 0.84775 0.92407 0.92667 0.87747 0.93685 0.93052 0.92811 0.89269 0.91421 0.92574 0.92949 0.92959 0.94014 0.90107 0.82591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 16 2 O -0.31 -4.81 10.50 -19.68 -0.21 -5.01 16 3 C 0.07 1.14 6.69 -39.24 -0.26 0.88 16 4 C -0.12 -1.73 9.03 -39.45 -0.36 -2.08 16 5 C -0.19 -2.74 9.03 -39.45 -0.36 -3.10 16 6 C 0.19 3.27 6.63 -39.24 -0.26 3.01 16 7 O -0.30 -4.70 5.62 -29.57 -0.17 -4.86 16 8 C 0.03 0.28 9.74 101.05 0.98 1.27 16 9 C -0.65 -12.72 5.92 -39.45 -0.23 -12.95 16 10 S 2.70 57.53 5.27 -107.50 -0.57 56.96 16 11 O -0.96 -22.88 15.52 -57.17 -0.89 -23.77 16 12 O -0.97 -20.84 15.86 -62.54 -0.99 -21.84 16 13 N -0.97 -20.63 2.73 -108.57 -0.30 -20.92 16 14 C 0.24 5.99 5.01 -5.19 -0.03 5.96 16 15 C -0.53 -13.81 7.53 -34.44 -0.26 -14.07 16 16 H 0.06 1.63 7.08 -52.49 -0.37 1.26 16 17 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 18 N -0.89 -25.49 13.29 55.43 0.74 -24.75 16 19 Si 0.89 21.17 29.54 -169.99 -5.02 16.14 16 20 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 C 0.15 2.78 2.44 -67.93 -0.17 2.61 16 24 C -0.16 -2.58 9.16 37.16 0.34 -2.24 16 25 C -0.15 -2.63 7.95 37.16 0.30 -2.33 16 26 C 0.00 -0.08 9.48 -39.45 -0.37 -0.45 16 27 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 28 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 29 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.13 1.38 6.29 -52.49 -0.33 1.05 16 31 H 0.13 1.43 6.29 -52.49 -0.33 1.10 16 32 H 0.06 0.54 7.66 -51.93 -0.40 0.14 16 33 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 34 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.05 1.14 6.45 -51.93 -0.33 0.80 16 36 H 0.05 1.41 6.91 -51.93 -0.36 1.05 16 37 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 38 H 0.09 1.55 5.70 -51.93 -0.30 1.25 16 39 H 0.07 1.19 6.69 -51.93 -0.35 0.84 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.05 0.91 6.57 -51.93 -0.34 0.57 16 43 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.08 1.60 6.65 -51.93 -0.35 1.25 16 45 H 0.16 2.99 7.33 -52.49 -0.38 2.61 16 LS Contribution 369.15 15.07 5.56 5.56 Total: -1.00 -33.31 369.15 -7.90 -41.21 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -6.28 Total: 1.85 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: 0.22 Total: -20.58 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: 0.44 Total: -45.68 kcal Atomic # 8 Polarization: -53.22 SS G_CDS: -2.25 Total: -55.48 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: 57.53 SS G_CDS: -0.57 Total: 56.96 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.31 -7.90 -41.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609158366.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.248 kcal (2) G-P(sol) polarization free energy of solvation -33.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds