Wall clock time and date at job start Wed Apr 1 2020 01:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35981 * 117.00374 * 2 1 4 4 C 1.38726 * 119.99874 * 0.02562 * 3 2 1 5 5 C 1.38106 * 120.00327 * 180.02562 * 4 3 2 6 6 C 1.38728 * 119.99835 * 359.97438 * 5 4 3 7 7 O 1.35975 * 120.00045 * 180.02562 * 6 5 4 8 8 C 1.42898 * 117.00093 * 0.02562 * 7 6 5 9 9 C 1.38681 * 119.99538 * 0.02562 * 6 5 4 10 10 S 1.76204 * 119.99342 * 179.97438 * 9 6 5 11 11 O 1.42105 * 106.39972 * 181.45719 * 10 9 6 12 12 O 1.42098 * 106.40426 * 48.53891 * 10 9 6 13 13 N 1.65595 * 107.21987 * 294.99603 * 10 9 6 14 14 C 1.46498 * 120.00275 * 270.00253 * 13 10 9 15 15 C 1.50703 * 109.46907 * 94.99986 * 14 13 10 16 16 H 1.08001 * 120.00049 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99988 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99970 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00266 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46821 * 0.02562 * 19 17 15 21 21 H 1.48491 * 109.47101 * 119.99857 * 19 17 15 22 22 H 1.48500 * 109.47126 * 240.00184 * 19 17 15 23 23 C 1.46498 * 119.99850 * 89.99964 * 13 10 9 24 24 C 1.53007 * 109.47108 * 120.00198 * 23 13 10 25 25 C 1.52998 * 109.47559 * 240.00191 * 23 13 10 26 26 C 1.38146 * 120.00351 * 0.22758 * 9 6 5 27 27 H 1.09000 * 109.46877 * 300.00122 * 1 2 3 28 28 H 1.08995 * 109.47121 * 59.99813 * 1 2 3 29 29 H 1.08998 * 109.47460 * 179.97438 * 1 2 3 30 30 H 1.08000 * 119.99562 * 359.97438 * 4 3 2 31 31 H 1.07991 * 120.00532 * 179.97438 * 5 4 3 32 32 H 1.09004 * 109.47473 * 300.00600 * 8 7 6 33 33 H 1.08997 * 109.47016 * 60.00394 * 8 7 6 34 34 H 1.09003 * 109.47553 * 180.02562 * 8 7 6 35 35 H 1.09001 * 109.47378 * 214.99601 * 14 13 10 36 36 H 1.09002 * 109.46925 * 335.00342 * 14 13 10 37 37 H 0.97003 * 120.00349 * 180.02562 * 18 17 15 38 38 H 1.09001 * 109.47170 * 0.02562 * 23 13 10 39 39 H 1.09001 * 109.46859 * 60.00110 * 24 23 13 40 40 H 1.09000 * 109.47156 * 180.02562 * 24 23 13 41 41 H 1.08998 * 109.47018 * 300.00407 * 24 23 13 42 42 H 1.09003 * 109.46923 * 60.00153 * 25 23 13 43 43 H 1.08999 * 109.47669 * 179.97438 * 25 23 13 44 44 H 1.09001 * 109.47130 * 300.00332 * 25 23 13 45 45 H 1.07996 * 120.00165 * 179.72447 * 26 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2909 2.3750 0.0005 5 6 1.9179 3.6056 0.0000 6 6 3.3033 3.6782 -0.0005 7 8 3.9206 4.8897 -0.0005 8 6 3.0807 6.0458 0.0006 9 6 4.0585 2.5150 -0.0011 10 16 5.8181 2.6073 -0.0024 11 8 6.2901 1.2674 -0.0374 12 8 6.1724 3.5296 1.0188 13 7 6.2716 3.3003 -1.4364 14 6 6.5319 2.4586 -2.6068 15 6 5.2879 2.3771 -3.4535 16 1 4.3928 2.8996 -3.1499 17 6 5.2921 1.6345 -4.6153 18 7 6.3817 0.9970 -4.9843 19 14 3.7500 1.5327 -5.6645 20 1 2.6691 2.3330 -5.0346 21 1 4.0368 2.0688 -7.0193 22 1 3.3182 0.1161 -5.7738 23 6 6.4123 4.7552 -1.5345 24 6 7.8495 5.1032 -1.9278 25 6 5.4493 5.2904 -2.5962 26 6 3.4313 1.2842 -0.0058 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 0.2124 2.3185 0.0005 31 1 1.3298 4.5113 0.0000 32 1 2.4506 6.0381 -0.8888 33 1 2.4523 6.0374 0.8911 34 1 3.6985 6.9438 0.0000 35 1 7.3424 2.8918 -3.1929 36 1 6.8147 1.4582 -2.2792 37 1 6.3848 0.4749 -5.8018 38 1 6.1798 5.2086 -0.5710 39 1 8.0824 4.6498 -2.8913 40 1 7.9543 6.1857 -2.0004 41 1 8.5355 4.7219 -1.1715 42 1 4.4255 5.0426 -2.3160 43 1 5.5537 6.3730 -2.6689 44 1 5.6823 4.8370 -3.5597 45 1 4.0194 0.3784 -0.0107 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609158366.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:41:39 Heat of formation + Delta-G solvation = -137.857783 kcal Electronic energy + Delta-G solvation = -30631.925702 eV Core-core repulsion = 26549.042022 eV Total energy + Delta-G solvation = -4082.883679 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.133 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.52084 -40.07548 -38.40266 -38.18690 -37.35432 -36.84573 -34.74135 -32.56366 -32.19127 -30.82292 -28.81817 -28.29523 -27.84490 -27.78767 -24.74915 -24.19376 -23.17376 -21.76511 -20.28452 -19.36965 -18.72623 -18.63454 -18.43191 -17.91236 -17.10551 -16.87692 -16.84053 -16.50354 -16.29789 -15.78325 -15.44050 -15.32359 -14.90955 -14.73108 -14.52089 -13.99639 -13.80006 -13.79151 -13.65114 -13.53210 -13.46780 -13.10851 -12.98725 -12.88354 -12.68738 -12.63495 -12.61656 -12.49497 -12.36281 -12.27018 -12.11807 -12.02568 -11.56840 -11.47148 -11.43794 -11.24338 -10.55349 -10.48527 -9.68443 -8.90221 -8.11791 -6.21183 -0.50064 -0.22128 0.30973 1.38157 1.40293 1.50388 2.03539 2.19444 2.35155 2.41395 2.47265 2.83806 3.19828 3.44167 3.63087 3.77328 4.03956 4.10808 4.16539 4.37969 4.39647 4.41075 4.45557 4.48168 4.50189 4.60050 4.66730 4.68724 4.74031 4.80864 4.97648 4.99765 5.00340 5.09631 5.19358 5.23265 5.31535 5.33175 5.46979 5.65736 5.78391 5.89147 6.09930 6.17282 6.18560 6.40913 6.88574 7.45722 8.96837 Molecular weight = 343.13amu Principal moments of inertia in cm(-1) A = 0.008397 B = 0.006993 C = 0.005124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3333.869767 B = 4003.327710 C = 5463.486973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.339 6.339 3 C 0.062 3.938 4 C -0.108 4.108 5 C -0.182 4.182 6 C 0.186 3.814 7 O -0.322 6.322 8 C 0.011 3.989 9 C -0.675 4.675 10 S 2.698 3.302 11 O -1.002 7.002 12 O -0.976 6.976 13 N -0.974 5.974 14 C 0.259 3.741 15 C -0.521 4.521 16 H 0.067 0.933 17 C 0.010 3.990 18 N -0.929 5.929 19 Si 0.948 3.052 20 H -0.262 1.262 21 H -0.277 1.277 22 H -0.287 1.287 23 C 0.144 3.856 24 C -0.156 4.156 25 C -0.143 4.143 26 C -0.043 4.043 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.117 0.883 30 H 0.177 0.823 31 H 0.180 0.820 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.125 0.875 35 H 0.034 0.966 36 H 0.014 0.986 37 H 0.263 0.737 38 H 0.102 0.898 39 H 0.048 0.952 40 H 0.092 0.908 41 H 0.047 0.953 42 H 0.050 0.950 43 H 0.079 0.921 44 H 0.050 0.950 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.156 10.598 9.304 19.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.254 6.254 3 C 0.016 3.984 4 C -0.126 4.126 5 C -0.201 4.201 6 C 0.138 3.862 7 O -0.235 6.235 8 C -0.083 4.083 9 C -0.764 4.764 10 S 2.791 3.209 11 O -0.992 6.992 12 O -0.967 6.967 13 N -0.813 5.813 14 C 0.136 3.864 15 C -0.560 4.560 16 H 0.085 0.915 17 C -0.188 4.188 18 N -0.569 5.569 19 Si 0.774 3.226 20 H -0.186 1.186 21 H -0.203 1.203 22 H -0.214 1.214 23 C 0.039 3.961 24 C -0.215 4.215 25 C -0.202 4.202 26 C -0.063 4.063 27 H 0.094 0.906 28 H 0.083 0.917 29 H 0.136 0.864 30 H 0.195 0.805 31 H 0.197 0.803 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.143 0.857 35 H 0.052 0.948 36 H 0.032 0.968 37 H 0.072 0.928 38 H 0.119 0.881 39 H 0.067 0.933 40 H 0.111 0.889 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.098 0.902 44 H 0.069 0.931 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -13.240 10.091 9.836 19.336 hybrid contribution -1.318 -0.627 -1.144 1.855 sum -14.558 9.464 8.692 19.418 Atomic orbital electron populations 1.23421 0.76119 1.05852 1.02565 1.86094 1.23795 1.26077 1.89444 1.18924 0.91544 0.85918 1.02006 1.21697 1.01901 0.90610 0.98437 1.21513 0.92082 1.00256 1.06280 1.18296 0.91863 0.84304 0.91770 1.86169 1.37388 1.12645 1.87323 1.23555 0.96664 0.85063 1.02973 1.29881 1.26902 0.96980 1.22629 1.01301 0.74310 0.72192 0.73094 1.93479 1.80161 1.38390 1.87210 1.93484 1.82939 1.64224 1.56027 1.57273 1.81687 1.15154 1.27227 1.18761 0.96623 0.88620 0.82408 1.21812 0.98388 1.29254 1.06570 0.91475 1.25706 0.98738 0.95271 0.99128 1.70063 1.29167 1.32975 1.24728 0.85644 0.80385 0.77638 0.78901 1.18626 1.20270 1.21352 1.20991 0.96420 0.77868 1.00847 1.22128 0.95457 1.02653 1.01279 1.22068 0.98694 1.00458 0.98992 1.19943 0.93493 0.96081 0.96779 0.90636 0.91676 0.86434 0.80530 0.80266 0.90914 0.90477 0.85696 0.94822 0.96822 0.92811 0.88062 0.93295 0.88913 0.93375 0.93097 0.90194 0.93129 0.85103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.24 9.81 113.37 1.11 1.36 16 2 O -0.34 -10.06 10.50 -93.34 -0.98 -11.04 16 3 C 0.06 2.00 6.69 22.49 0.15 2.15 16 4 C -0.11 -2.62 9.03 22.36 0.20 -2.41 16 5 C -0.18 -4.41 9.03 22.36 0.20 -4.21 16 6 C 0.19 5.98 6.63 22.49 0.15 6.13 16 7 O -0.32 -9.18 5.62 -83.79 -0.47 -9.65 16 8 C 0.01 0.18 9.74 113.37 1.10 1.28 16 9 C -0.68 -26.89 5.92 22.35 0.13 -26.75 16 10 S 2.70 121.03 5.27 -56.49 -0.30 120.73 16 11 O -1.00 -51.97 15.52 -128.00 -1.99 -53.95 16 12 O -0.98 -43.19 15.86 -122.87 -1.95 -45.13 16 13 N -0.97 -42.92 2.73 -497.40 -1.36 -44.27 16 14 C 0.26 13.57 5.01 85.63 0.43 13.99 16 15 C -0.52 -27.96 7.53 25.60 0.19 -27.77 16 16 H 0.07 3.49 7.08 -2.91 -0.02 3.47 16 17 C 0.01 0.57 5.46 84.66 0.46 1.03 16 18 N -0.93 -55.09 13.29 21.45 0.28 -54.80 16 19 Si 0.95 43.56 29.54 68.60 2.03 45.59 16 20 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 21 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 22 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 23 C 0.14 5.15 2.44 44.99 0.11 5.26 16 24 C -0.16 -5.07 9.16 71.98 0.66 -4.41 16 25 C -0.14 -4.70 7.95 71.98 0.57 -4.13 16 26 C -0.04 -1.71 9.48 22.35 0.21 -1.49 16 27 H 0.08 0.92 7.66 -2.39 -0.02 0.90 16 28 H 0.06 0.96 7.66 -2.39 -0.02 0.94 16 29 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.18 2.62 6.29 -2.91 -0.02 2.60 16 31 H 0.18 2.64 6.29 -2.92 -0.02 2.62 16 32 H 0.07 0.97 7.66 -2.38 -0.02 0.95 16 33 H 0.08 0.91 7.66 -2.39 -0.02 0.89 16 34 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.03 1.82 6.45 -2.39 -0.02 1.80 16 36 H 0.01 0.82 6.91 -2.39 -0.02 0.80 16 37 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 38 H 0.10 3.40 5.70 -2.39 -0.01 3.38 16 39 H 0.05 1.76 6.69 -2.39 -0.02 1.74 16 40 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.05 1.66 6.57 -2.39 -0.02 1.65 16 43 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.05 1.97 6.65 -2.39 -0.02 1.95 16 45 H 0.13 5.61 7.33 -2.91 -0.02 5.58 16 Total: -1.00 -77.35 369.15 1.97 -75.38 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: 1.01 Total: 17.13 kcal Atomic # 6 Polarization: -45.67 SS G_CDS: 5.69 Total: -39.98 kcal Atomic # 7 Polarization: -98.00 SS G_CDS: -1.07 Total: -99.08 kcal Atomic # 8 Polarization: -114.39 SS G_CDS: -5.39 Total: -119.78 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: 121.03 SS G_CDS: -0.30 Total: 120.73 kcal Total: -77.35 1.97 -75.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609158366.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.473 kcal (2) G-P(sol) polarization free energy of solvation -77.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds