Wall clock time and date at job start Wed Apr 1 2020 01:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 113.99826 * 2 1 4 4 C 1.53005 * 109.46834 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47019 * 304.99366 * 4 3 2 6 6 O 1.42893 * 109.47448 * 64.99681 * 4 3 2 7 7 C 1.53004 * 109.47044 * 184.99652 * 4 3 2 8 8 N 1.46499 * 109.47094 * 179.97438 * 7 4 3 9 9 S 1.65597 * 119.99926 * 165.27799 * 8 7 4 10 10 O 1.42096 * 106.40195 * 178.26439 * 9 8 7 11 11 O 1.42108 * 106.40105 * 311.18495 * 9 8 7 12 12 C 1.76199 * 107.22117 * 64.72196 * 9 8 7 13 13 C 1.38235 * 120.00343 * 269.72948 * 12 9 8 14 14 C 1.38234 * 120.00456 * 179.76677 * 13 12 9 15 15 C 1.38238 * 119.99744 * 0.47859 * 14 13 12 16 16 C 1.50691 * 120.00228 * 179.76932 * 15 14 13 17 17 C 1.50694 * 109.47544 * 270.02724 * 16 15 14 18 18 H 1.08002 * 120.00263 * 359.97438 * 17 16 15 19 19 C 1.37884 * 120.00516 * 179.97438 * 17 16 15 20 20 N 1.31510 * 120.00063 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 119.99576 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47049 * 89.99937 * 21 19 17 23 23 H 1.48500 * 109.46911 * 209.99699 * 21 19 17 24 24 H 1.48498 * 109.47434 * 330.00033 * 21 19 17 25 25 C 1.38240 * 120.00020 * 359.79754 * 15 14 13 26 26 C 1.38234 * 119.99729 * 359.94819 * 25 15 14 27 27 H 1.09002 * 109.47144 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47443 * 300.00414 * 1 2 3 29 29 H 1.09009 * 109.47053 * 60.00490 * 1 2 3 30 30 H 1.09002 * 109.47849 * 59.99838 * 3 2 1 31 31 H 1.09000 * 109.47195 * 299.99145 * 3 2 1 32 32 H 1.08998 * 109.47073 * 300.00456 * 5 4 3 33 33 H 1.09001 * 109.46733 * 60.00453 * 5 4 3 34 34 H 1.08996 * 109.47023 * 179.97438 * 5 4 3 35 35 H 0.96707 * 113.99900 * 59.99878 * 6 4 3 36 36 H 1.09007 * 109.47007 * 59.99772 * 7 4 3 37 37 H 1.08995 * 109.47080 * 300.00016 * 7 4 3 38 38 H 0.97001 * 119.99790 * 344.99588 * 8 7 4 39 39 H 1.08000 * 119.99703 * 359.97438 * 13 12 9 40 40 H 1.07996 * 120.00530 * 180.25977 * 14 13 12 41 41 H 1.09004 * 109.47090 * 30.02414 * 16 15 14 42 42 H 1.09003 * 109.47595 * 150.02195 * 16 15 14 43 43 H 0.96994 * 120.00213 * 180.02562 * 20 19 17 44 44 H 1.07993 * 120.00191 * 179.97438 * 25 15 14 45 45 H 1.08007 * 120.00126 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 6 3.9780 0.3199 1.1827 6 8 3.9659 0.5791 -1.2200 7 6 4.1573 2.5769 0.1263 8 7 5.6177 2.4612 0.1275 9 16 6.5550 3.8048 -0.1145 10 8 7.9057 3.3747 -0.0161 11 8 6.0292 4.4596 -1.2609 12 6 6.2769 4.8870 1.2479 13 6 5.2727 5.8349 1.1839 14 6 5.0514 6.6808 2.2546 15 6 5.8407 6.5854 3.3854 16 6 5.6029 7.5109 4.5506 17 6 6.4349 8.7559 4.3813 18 1 7.0726 8.8659 3.5165 19 6 6.3822 9.7549 5.3302 20 7 7.1087 10.8411 5.1826 21 14 5.2799 9.5645 6.8263 22 1 6.0392 8.9070 7.9201 23 1 4.8218 10.9032 7.2770 24 1 4.1027 8.7320 6.4711 25 6 6.8487 5.6413 3.4472 26 6 7.0665 4.7920 2.3785 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.6886 1.8465 0.8899 31 1 1.6886 1.8463 -0.8901 32 1 3.6497 0.7817 2.1138 33 1 3.5350 -0.6720 1.0932 34 1 5.0645 0.2334 1.1829 35 1 3.7192 1.0744 -2.0131 36 1 3.8289 3.0388 1.0575 37 1 3.8420 3.1930 -0.7158 38 1 6.0357 1.5982 0.2742 39 1 4.6589 5.9123 0.2987 40 1 4.2641 7.4185 2.2063 41 1 4.5478 7.7817 4.5901 42 1 5.8841 7.0092 5.4766 43 1 7.0719 11.5436 5.8504 44 1 7.4656 5.5671 4.3304 45 1 7.8543 4.0546 2.4266 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885027904.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:24 Heat of formation + Delta-G solvation = -179.700356 kcal Electronic energy + Delta-G solvation = -27890.944375 eV Core-core repulsion = 23806.246266 eV Total energy + Delta-G solvation = -4084.698109 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.133 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.25798 -40.11085 -38.36420 -37.90098 -36.97665 -35.56274 -35.41723 -33.54471 -32.37861 -31.96154 -29.70550 -28.34893 -27.56977 -25.64513 -25.27917 -23.74451 -22.31090 -21.51850 -20.54914 -19.05355 -19.02723 -18.75686 -18.19394 -17.14352 -16.99706 -16.88294 -16.74292 -16.20812 -15.99386 -15.86299 -15.64242 -15.38494 -15.26762 -14.62054 -14.45970 -14.39592 -14.20906 -14.00935 -13.61874 -13.43379 -13.28283 -13.25558 -13.17454 -13.06867 -13.00036 -12.68133 -12.56680 -12.51460 -12.41824 -12.06690 -11.93017 -11.72299 -11.61083 -11.52889 -11.02809 -10.82848 -10.62157 -10.45927 -9.95643 -9.93474 -8.33593 -6.40895 -0.64658 -0.07839 0.40056 1.36461 1.37905 1.49334 1.97723 2.32523 2.54038 2.73097 2.82577 3.00907 3.32650 3.39176 3.71473 3.84350 3.86244 3.93295 3.99024 4.08820 4.33428 4.43596 4.46006 4.47515 4.49477 4.58137 4.60397 4.72099 4.79133 4.85050 4.86598 4.90007 5.00229 5.01063 5.03653 5.10353 5.18099 5.29611 5.35521 5.49575 5.78474 5.94312 6.02969 6.19006 6.23286 6.65920 6.86107 7.23039 8.82833 Molecular weight = 343.13amu Principal moments of inertia in cm(-1) A = 0.013400 B = 0.002705 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.030878 B =10348.026348 C =11733.243730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.402 6.402 3 C 0.031 3.969 4 C 0.135 3.865 5 C -0.141 4.141 6 O -0.562 6.562 7 C 0.084 3.916 8 N -1.096 6.096 9 S 2.728 3.272 10 O -0.988 6.988 11 O -0.981 6.981 12 C -0.699 4.699 13 C -0.021 4.021 14 C -0.152 4.152 15 C -0.002 4.002 16 C 0.012 3.988 17 C -0.526 4.526 18 H 0.026 0.974 19 C 0.008 3.992 20 N -0.948 5.948 21 Si 0.954 3.046 22 H -0.265 1.265 23 H -0.285 1.285 24 H -0.240 1.240 25 C -0.155 4.155 26 C -0.021 4.021 27 H 0.092 0.908 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.389 0.611 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.427 0.573 39 H 0.160 0.840 40 H 0.136 0.864 41 H 0.043 0.957 42 H 0.038 0.962 43 H 0.269 0.731 44 H 0.132 0.868 45 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.252 -23.117 -9.387 28.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.321 6.321 3 C -0.046 4.046 4 C 0.092 3.908 5 C -0.198 4.198 6 O -0.369 6.369 7 C -0.043 4.043 8 N -0.860 5.860 9 S 2.818 3.182 10 O -0.979 6.979 11 O -0.971 6.971 12 C -0.786 4.786 13 C -0.040 4.040 14 C -0.171 4.171 15 C -0.002 4.002 16 C -0.026 4.026 17 C -0.564 4.564 18 H 0.044 0.956 19 C -0.189 4.189 20 N -0.587 5.587 21 Si 0.776 3.224 22 H -0.190 1.190 23 H -0.211 1.211 24 H -0.163 1.163 25 C -0.174 4.174 26 C -0.041 4.041 27 H 0.110 0.890 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.238 0.762 36 H 0.112 0.888 37 H 0.116 0.884 38 H 0.265 0.735 39 H 0.177 0.823 40 H 0.154 0.846 41 H 0.061 0.939 42 H 0.057 0.943 43 H 0.078 0.922 44 H 0.150 0.850 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -13.394 -23.241 -9.651 28.508 hybrid contribution -0.437 1.294 1.086 1.745 sum -13.831 -21.947 -8.566 27.319 Atomic orbital electron populations 1.22916 0.79803 1.03598 1.00834 1.87898 1.20918 1.27739 1.95585 1.23268 0.93123 0.85480 1.02741 1.21324 0.91168 0.91378 0.86923 1.21714 1.01976 1.00411 0.95730 1.86577 1.81265 1.53324 1.15777 1.22122 0.78912 0.98486 1.04776 1.55100 1.15886 1.24419 1.90623 1.00685 0.71975 0.72435 0.73078 1.93543 1.35001 1.81876 1.87437 1.93535 1.80517 1.75775 1.47253 1.30778 1.09562 1.19093 1.19159 1.21074 0.93875 0.91207 0.97814 1.21364 1.01696 1.00555 0.93506 1.20593 0.92173 0.91612 0.95856 1.18826 0.97662 0.92851 0.93218 1.21067 1.25684 1.01794 1.07814 0.95578 1.26021 0.96951 0.94268 1.01697 1.70055 1.42385 1.08964 1.37334 0.85608 0.80066 0.78075 0.78618 1.19023 1.21056 1.16282 1.21350 0.98802 0.96878 1.00382 1.21026 0.95574 0.96792 0.90668 0.89000 0.93201 0.93199 0.90705 0.91100 0.89832 0.91858 0.91675 0.76184 0.88761 0.88449 0.73482 0.82289 0.84610 0.93927 0.94335 0.92242 0.84990 0.82970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 11.01 113.37 1.25 1.48 16 2 O -0.40 -5.97 9.79 -144.34 -1.41 -7.38 16 3 C 0.03 0.34 5.06 71.98 0.36 0.70 16 4 C 0.13 1.68 0.89 -10.79 -0.01 1.67 16 5 C -0.14 -1.90 8.47 71.98 0.61 -1.29 16 6 O -0.56 -8.39 12.81 -144.34 -1.85 -10.24 16 7 C 0.08 1.02 5.33 86.38 0.46 1.48 16 8 N -1.10 -17.47 5.72 -187.48 -1.07 -18.55 16 9 S 2.73 65.02 5.74 -56.49 -0.32 64.69 16 10 O -0.99 -29.43 17.28 -128.00 -2.21 -31.64 16 11 O -0.98 -27.36 16.76 -128.00 -2.15 -29.51 16 12 C -0.70 -19.11 5.94 22.27 0.13 -18.98 16 13 C -0.02 -0.57 9.52 22.27 0.21 -0.36 16 14 C -0.15 -5.09 9.70 22.27 0.22 -4.87 16 15 C 0.00 -0.08 5.07 -19.87 -0.10 -0.18 16 16 C 0.01 0.51 4.17 29.10 0.12 0.63 16 17 C -0.53 -29.33 9.65 25.60 0.25 -29.08 16 18 H 0.03 1.65 7.98 -2.91 -0.02 1.63 16 19 C 0.01 0.46 5.47 84.66 0.46 0.92 16 20 N -0.95 -58.21 13.96 21.45 0.30 -57.91 16 21 Si 0.95 41.74 27.47 68.60 1.88 43.62 16 22 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 23 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 24 H -0.24 -9.42 6.54 99.48 0.65 -8.77 16 25 C -0.16 -5.38 9.70 22.27 0.22 -5.16 16 26 C -0.02 -0.63 9.52 22.27 0.21 -0.42 16 27 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.05 0.37 8.14 -2.38 -0.02 0.35 16 30 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.06 1.02 7.56 -2.39 -0.02 1.00 16 34 H 0.06 0.84 6.60 -2.39 -0.02 0.83 16 35 H 0.39 3.45 9.05 -74.05 -0.67 2.78 16 36 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 37 H 0.10 1.00 7.76 -2.39 -0.02 0.98 16 38 H 0.43 6.01 7.08 -96.74 -0.69 5.32 16 39 H 0.16 3.45 7.61 -2.91 -0.02 3.43 16 40 H 0.14 4.23 8.06 -2.91 -0.02 4.20 16 41 H 0.04 1.78 7.14 -2.38 -0.02 1.76 16 42 H 0.04 1.61 7.51 -2.39 -0.02 1.59 16 43 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 44 H 0.13 4.35 8.06 -2.91 -0.02 4.33 16 45 H 0.15 3.78 7.62 -2.91 -0.02 3.76 16 Total: -1.00 -77.91 387.13 -2.84 -80.75 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: -0.40 Total: 19.62 kcal Atomic # 6 Polarization: -57.85 SS G_CDS: 4.39 Total: -53.46 kcal Atomic # 7 Polarization: -75.69 SS G_CDS: -0.77 Total: -76.46 kcal Atomic # 8 Polarization: -71.15 SS G_CDS: -7.62 Total: -78.76 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 1.88 Total: 43.62 kcal Atomic # 16 Polarization: 65.02 SS G_CDS: -0.32 Total: 64.69 kcal Total: -77.91 -2.84 -80.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885027904.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.955 kcal (2) G-P(sol) polarization free energy of solvation -77.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds